Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe20g00669 ATGGATAAAGGAATCCCCGTTGTGTGCTCTGCTGGAAACTCCGGCCCGAACATGGCGACTGCTTCTAATATTGCTCCGTGGATTTTGACAGCGAAAGCGACGACTGCCTTTGCCCAGGACGCCATTCTCTGCAAGCCGGAAACGTTGGATCATTCTAAAGTGAAAGGGAAGATCTTGGTTTGCTTGAGAGGGGGTTCTTCGAGAATTAACAAAGGAATGCAAGCCCTCCTCGCCGGTGCTGTCGGAATGATTCTCTGCAATGATAGGCTTAGTGGATTTCAAATCATGGCCGATCTCCATGTTCTTCCAACTTCCCATATCAATTACAATGACGGCCAAGCTGTTTTCTCGTACATCTATTTCACAAAAAATCCGATGGGATATTTGATCCCGCCGTCGTCTAAAGTTAATACCAAACCTTCTCCGACAATGGCGGCTTTCTCCTCGAGAGGACCCAACATCGTTTCACCTGAAATTATCAAGCCGGACGTGACAGCGCCGGGAGTGAACATAATCGCGGCATTCTCCGGCGCCGTGAGCCCAACAGGGGAGCCATTCGACAACAGAGCAGTTCCATACATAACAATGTCGGGGACCTCCATGTCCTGTCCCCATGTCTCTGGCATTGTCGGCCTCCTCAAAGCTCTCCACCCCGAATGGAGCCCTGCTGCCATCAAATCTGCCATAATGACCTCCGCCAGAGTTAGCGACAACACAATGAACCTCATGCTCGACGGCGGCTCCCCTATCTTTGCTCCAGCCACCCCGTTCATATATGGGTCAGGGCACATCCGCCCCACTGGCGCCATGGACCCCGGCCTTGTCTACGACCTTTCCCCCAACGATTACTTGGAATTCCTCTGCGCCAGCGGCTACAAGGAGAAGAACCTTCGAGTATTCGCCGATGGCAATTTCAAATGCCCTGTTTCTGGTTCTATTTTGAACTTTAATTACCCTTCTATTGGGGTTCAGAACTTAATTGGGAGTGTCACGGTTTCTAGAAGGCTGAAGAATGTTGGCATGCCGGGGGTTTACAGAGTTAGAGTCGAGCGGCCGGAAGGAGTTCAGGTTTCAGTGAATCCAAGCGTTTTGAAGTTTGAGAAGATTGGAGAGGAGAAGGGGTTTGAATTGACGATAACAGGAGTTGTGGCGGAGGGTCAAATTAGTTTCGGTACGTTGATTTGGACGGACGACAAGCACTTTGTTAGGAGCCCAATTGTTGTTTCTTCAGGCTTTTTCTGA 1242 50.16 MDKGIPVVCSAGNSGPNMATASNIAPWILTAKATTAFAQDAILCKPETLDHSKVKGKILVCLRGGSSRINKGMQALLAGAVGMILCNDRLSGFQIMADLHVLPTSHINYNDGQAVFSYIYFTKNPMGYLIPPSSKVNTKPSPTMAAFSSRGPNIVSPEIIKPDVTAPGVNIIAAFSGAVSPTGEPFDNRAVPYITMSGTSMSCPHVSGIVGLLKALHPEWSPAAIKSAIMTSARVSDNTMNLMLDGGSPIFAPATPFIYGSGHIRPTGAMDPGLVYDLSPNDYLEFLCASGYKEKNLRVFADGNFKCPVSGSILNFNYPSIGVQNLIGSVTVSRRLKNVGMPGVYRVRVERPEGVQVSVNPSVLKFEKIGEEKGFELTITGVVAEGQISFGTLIWTDDKHFVRSPIVVSSGFF 413
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
20 4459739 4473835 - Cp4.1LG20g06750.1 Cpe20g00669 487298
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe20g00669 413 CDD PA_subtilisin_like 43 129 - -
Cpe20g00669 413 ProSiteProfiles Serine proteases, subtilase domain profile. 1 270 - -
Cpe20g00669 413 PANTHER SUBTILISIN-LIKE PROTEASE SBT5.4 2 35 - -
Cpe20g00669 413 ProSitePatterns Serine proteases, subtilase family, serine active site. 198 208 IPR023828 -
Cpe20g00669 413 PANTHER PEPTIDASE S8 2 35 - -
Cpe20g00669 413 PANTHER PEPTIDASE S8 62 409 - -
Cpe20g00669 413 Gene3D Peptidase S8/S53 domain 1 35 IPR036852 GO:0004252|GO:0006508
Cpe20g00669 413 Gene3D Peptidase S8/S53 domain 138 283 IPR036852 GO:0004252|GO:0006508
Cpe20g00669 413 PANTHER SUBTILISIN-LIKE PROTEASE SBT5.4 62 409 - -
Cpe20g00669 413 SUPERFAMILY PA domain 51 117 IPR046450 -
Cpe20g00669 413 Pfam Subtilase family 2 241 IPR000209 GO:0006508|GO:0008236
Cpe20g00669 413 Pfam Fibronectin type-III domain 315 408 IPR041469 -
Cpe20g00669 413 Gene3D - 287 411 - -
Cpe20g00669 413 Pfam PA domain 44 114 IPR003137 -
Cpe20g00669 413 Gene3D - 37 137 - -
Cpe20g00669 413 SUPERFAMILY Subtilisin-like 2 271 IPR036852 GO:0004252|GO:0006508
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe20g00669 Cpe-Chr20:4459739 Cpe15g00670 Cpe-Chr15:7318749 5.12E-139 dispersed
Cpe20g00668 Cpe-Chr20:4427811 Cpe20g00669 Cpe-Chr20:4459739 0 tandem
Cpe20g00669 Cpe-Chr20:4459739 Cpe20g00670 Cpe-Chr20:4474928 0 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe20g00669 - - cpep:111783570 800.045