Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe20g00678 ATGGCCCCAAAAACGGCTTCCAAGCCTTCTGCAACTGATCCAAAGTCCTTAACTGAGCCAGTTATCTCTGGAGATGTATTGAACTCCACGCAGAGATCCTTGAATCAGTGTACTTTGAGTGATTCATCAAGCACCAAAGAGATCACATTGACCCAGCGAGATCCTGCGCTTACCGGGACTCGGGGTGTAGCAGAGGACTCTGTGGAACCTGAAAAGAAGACATCAGAATGTGAGAGTGGGAAGGATACAAACAGTGTTGCTAAGAGCAGTGGAAGTGGTAAGATTAGTAACTGTGTGGAGATGGTTGAGAGTGGGAAGAGCAGCGTGTGTCGGGGTAGCACGAGCAGCGATATCAGCGATGAAAGCAGCTGTAGCAGCTTTAGTAGTAGCATCAGTAAGCCTCACAAGTCGAATGACTTGAGATGGGAGGCCATCCAAGCTGTCCGTGTAAGGGATGGGATTTTGGGATTAGGCCATTTTAGACTGTTGAAGAGACTAGGTTGTGGCGATATCGGAAGCGTCTACTTGTCGGAGTTGAGCGGTACTAAATGTTACTTTGCAATGAAGGTCATGGATAAAGGGTCTCTAGCGAGTCGAAAGAAGTTGCTTCGTGCTCAGACCGAACGAGAAATACTGCAATCTCTTGATCATCCATTCCTGCCTACATTGTATACTCATTTCGAAACTGATAAGTTCTCATGCTTGGTGATGGAGTTCTGCCCTGGGGGAGACTTGCACACTCTAAGGCAGAGACAGCCCGGGAAGCATTTTCCCGAACAGGCCGTGAAATTTTATGTAGCAGAGGTCCTCCTAGCACTTGAGTATCTTCACATGCTCGGGATCGTATACCGGGACCTCAAGCCCGAGAATGTTCTCGTGAGGGAGGATGGACACATAATGCTTTCAGATTTTGATCTTTCCTTAAGATGTGCTGTTAGTCCAACCTTGGTTAAGGGCTCGTGTTCGGAGTCCGAGGCGTTGAGAAAGAATTCAGTTTATTGTGCTCAACCGGCTTGTATCCAACCTTCCTGCATTCAGCCATCCTGTGTAGTTCCCACCATGTGCTTCTCTCCCAGGCTTTTCTCTAGCAAGTCAAAGAAGGATAGGAAACCCAAGATTGAAATAGGAAACCAGGTAACGCCATTGCCAGAGCTCGTTGCAGAGCCTACGGAGGCAAGGTCAATGTCGTTCGTTGGTACACACGAGTACTTGGCGCCCGAGATCATTAAAGGCGAAGGTCATGGAAGTGCTGTTGACTGGTGGACATTTGGGATCTTTCTATATGAACTGTTGTTTGGTAAAACTCCTTTTAAGGGATCTGGGAATCGAGCGACGTTGTTCAACGTCGTCGGTCAGCCTTTACGGTTCCCTGAATCACCAGTTGTTAGTTTCGCTGCGAGAGATCTCATCAGGGGATTGCTTGTCAAGGAACCACAGCATAGATTAGCTTACAAACGAGGAGCAACTGAGATCAAACAACACCCCTTCTTTGAAGGTGTCAACTGGGCATTGATACGATGCGCTTCGCCACCGGAAGTACCAAAGCCTGTCGAGATCGAGCGGATACCCTCACCAACACCTCCAGTCAGTGGAAAAACTGTAATGGCTAGACCTGGCCCTGACTCCAAATCATCTGATAATTATCTGGAGTTTGATTTCTTTTAG 1665 47.81 MAPKTASKPSATDPKSLTEPVISGDVLNSTQRSLNQCTLSDSSSTKEITLTQRDPALTGTRGVAEDSVEPEKKTSECESGKDTNSVAKSSGSGKISNCVEMVESGKSSVCRGSTSSDISDESSCSSFSSSISKPHKSNDLRWEAIQAVRVRDGILGLGHFRLLKRLGCGDIGSVYLSELSGTKCYFAMKVMDKGSLASRKKLLRAQTEREILQSLDHPFLPTLYTHFETDKFSCLVMEFCPGGDLHTLRQRQPGKHFPEQAVKFYVAEVLLALEYLHMLGIVYRDLKPENVLVREDGHIMLSDFDLSLRCAVSPTLVKGSCSESEALRKNSVYCAQPACIQPSCIQPSCVVPTMCFSPRLFSSKSKKDRKPKIEIGNQVTPLPELVAEPTEARSMSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLYELLFGKTPFKGSGNRATLFNVVGQPLRFPESPVVSFAARDLIRGLLVKEPQHRLAYKRGATEIKQHPFFEGVNWALIRCASPPEVPKPVEIERIPSPTPPVSGKTVMARPGPDSKSSDNYLEFDFF 554
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
20 4641885 4645135 + Cp4.1LG20g06650.1 Cpe20g00678 487307
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe20g00678 554 MobiDBLite consensus disorder prediction 521 546 - -
Cpe20g00678 554 ProSitePatterns Serine/Threonine protein kinases active-site signature. 281 293 IPR008271 GO:0004672|GO:0006468
Cpe20g00678 554 MobiDBLite consensus disorder prediction 9 56 - -
Cpe20g00678 554 MobiDBLite consensus disorder prediction 1 92 - -
Cpe20g00678 554 CDD STKc_phototropin_like 159 520 - -
Cpe20g00678 554 ProSiteProfiles Protein kinase domain profile. 160 497 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cpe20g00678 554 SMART serkin_6 160 497 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cpe20g00678 554 MobiDBLite consensus disorder prediction 65 79 - -
Cpe20g00678 554 Pfam Protein kinase domain 161 313 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cpe20g00678 554 Pfam Protein kinase domain 394 497 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cpe20g00678 554 Gene3D Transferase(Phosphotransferase) domain 1 244 312 - -
Cpe20g00678 554 Gene3D Phosphorylase Kinase; domain 1 158 243 - -
Cpe20g00678 554 SUPERFAMILY Protein kinase-like (PK-like) 132 529 IPR011009 -
Cpe20g00678 554 PANTHER SERINE/THREONINE KINASE FAMILY PROTEIN 32 554 - -
Cpe20g00678 554 Gene3D Transferase(Phosphotransferase) domain 1 391 515 - -
Cpe20g00678 554 MobiDBLite consensus disorder prediction 108 135 - -
Cpe20g00678 554 PANTHER FLIPPASE KINASE 1-RELATED 32 554 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe19g00087 Cpe-Chr19:680519 Cpe20g00678 Cpe-Chr20:4641885 0 dispersed
Cpe19g00458 Cpe-Chr19:4046135 Cpe20g00678 Cpe-Chr20:4641885 0 dispersed
Cpe10g01239 Cpe-Chr10:9546367 Cpe20g00678 Cpe-Chr20:4641885 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
63093 PF00069 Pkinase 7.20E-37 CL0016 Cpe PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe20g00678 K08286 - csv:101213662 948.732