Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe20g00685 ATGGCAAATCCAGAAGGGTCAAGCTTTGATTTTGAAGAGCTCGAAGAAGCCATAGTTTTACAGAGAGTTGAGCTTCAAAACGACGAACTCAAATCTCCACGTAATAATTTTCATTCTTATCCTACTCTGTTTCAGCTCTGTACTAATTTCATTGCATATTTTGTTGATATGTTCCCTTCTTGGCCAATAACCACAACGCCTTGTTCTTCAAATCATCATGTTTTCAAAACAGAGCCATCGTCAAACCAGAATCAATCACAGAGAAAAGGAGCAAATTCAACGTCACAGAGGCAGCTTGATGCCAAGACACTGAGACGATTAGCTCAAAACAGAGTAGCTGCAAAAAAGAGCCGTCTGAGGAAGAAGGCTTATATTCAGCAGCTAGAGTCCAGTAGAATCAAGCTCTCTCAGCTTGAACAAGACCTCCATAGAGCACGAGCTGCAATATTTGACATGGAGTATGCGCGGTGGCTAGACGACGACCTCCGTATGACGTCGGAGTTGCGGGCGGCAGTGGAGGGGCATCTCCCGGACGGCAATCTCCGAGCAATCGTAGACGGTTACATGAGTCACTACGACGAAATATTTGAGTTGAAAAGTGTGGGAGCAAAATCAGATGTGTTTCATTTGATGACGGGAATGTGGATGAGTCCGGCGGAGCGTTGCTTCCTTTGGATCGGAGGATTCCGGCCGTCGAAGCTCATAGAGATGGTAATTCCGCAGTTAGAGACATTAACGGAGCAGCAAGCTGTAGGAATATGTAATTTGCAGAGATGTTCACAAGAAACGGAGGATGCTCTGTATCAGGGGCTTGACCAGTTCCACCATTCTCTCATAATGGCCGTGGCCGTCGCCAGCACCGCCGTGATGGAGGGGGCTGACATGTTAAGACAACAAACGCTTCATCAGTTACGTAGAATATTGACGGTTCGACAAGCAGCTCAATGTTTCATGGTAATTGGAGAGTACTATGGAAGACTGAGAGCTCTTAGTTCATTGTGGGTTTCCCGACCAAGGGAGAGCAGGAGATGGTTGAATGATGAAGGTTCATGCCAAACAGCAACAAGAAGAAGAACAGAGGAAGAGATGATTCAGATTCAGATTCAGAGTTCACACAACCATTTCCCAAACTTCTAA 1137 45.73 MANPEGSSFDFEELEEAIVLQRVELQNDELKSPRNNFHSYPTLFQLCTNFIAYFVDMFPSWPITTTPCSSNHHVFKTEPSSNQNQSQRKGANSTSQRQLDAKTLRRLAQNRVAAKKSRLRKKAYIQQLESSRIKLSQLEQDLHRARAAIFDMEYARWLDDDLRMTSELRAAVEGHLPDGNLRAIVDGYMSHYDEIFELKSVGAKSDVFHLMTGMWMSPAERCFLWIGGFRPSKLIEMVIPQLETLTEQQAVGICNLQRCSQETEDALYQGLDQFHHSLIMAVAVASTAVMEGADMLRQQTLHQLRRILTVRQAAQCFMVIGEYYGRLRALSSLWVSRPRESRRWLNDEGSCQTATRRRTEEEMIQIQIQSSHNHFPNF 378
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
20 4812582 4820940 - Cp4.1LG20g06850.1 Cpe20g00685 487314
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe20g00685 378 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 100 144 IPR004827 GO:0003700|GO:0006355
Cpe20g00685 378 ProSiteProfiles DOG1 domain profile. 147 337 IPR025422 GO:0006351|GO:0043565
Cpe20g00685 378 Coils Coil 121 148 - -
Cpe20g00685 378 MobiDBLite consensus disorder prediction 74 100 - -
Cpe20g00685 378 Gene3D - 101 152 - -
Cpe20g00685 378 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 105 120 IPR004827 GO:0003700|GO:0006355
Cpe20g00685 378 Pfam bZIP transcription factor 101 142 IPR004827 GO:0003700|GO:0006355
Cpe20g00685 378 PANTHER TRANSCRIPTION FACTOR TGA9 77 347 - -
Cpe20g00685 378 SMART brlzneu 98 156 IPR004827 GO:0003700|GO:0006355
Cpe20g00685 378 PANTHER TRANSCRIPTION FACTOR TGA9 77 347 - -
Cpe20g00685 378 SUPERFAMILY Leucine zipper domain 104 147 IPR046347 GO:0003700|GO:0006355
Cpe20g00685 378 Pfam Seed dormancy control 166 239 IPR025422 GO:0006351|GO:0043565
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe08g01389 Cpe-Chr8:9987368 Cpe20g00685 Cpe-Chr20:4812582 4.61E-45 dispersed
Cpe09g00623 Cpe-Chr9:4553663 Cpe20g00685 Cpe-Chr20:4812582 2.33E-167 dispersed
Cpe13g00411 Cpe-Chr13:4453535 Cpe20g00685 Cpe-Chr20:4812582 4.04E-85 dispersed
Cpe16g00804 Cpe-Chr16:7840910 Cpe20g00685 Cpe-Chr20:4812582 9.80E-101 dispersed
Cpe20g00685 Cpe-Chr20:4812582 Cpe07g00106 Cpe-Chr7:547250 3.73E-99 dispersed
Cpe20g00685 Cpe-Chr20:4812582 Cpe03g00448 Cpe-Chr3:2531607 4.85E-98 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
51151 PF14144 DOG1 9.90E-30 No_clan Cpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe20g00685 K14431 - csv:101204604 479.559