Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe20g00697 ATGGGTTTGAGGAATCACATGGCACAAGAAAACCACATAACTTTCATAGAATGGCTTAAACCCTCCATTTCTCTCTCTTCTTCCCTTTCTTCGTCCTCTTCCTCGTCCTCCGATCAAGATTTGATATCTCCGACGACCGCCCAAAGGTGCCTGCCTTTGTTCACGGAGAAAGATGAAGAACGGGGTCGAATTCGAGATCGGGAAAGAAAAAGCTTGGGAATTAAAGAGGAAGATGAAGATTTGGTGAAAGTAGAAGTGGGTTTGCACATTGGGCTTCCAAATGTTGGTGATGTCCCTAATTTTGGTGATGGGAATATGAATGGTTTTGTAAAGAAAGAAGAAATGAAGAAAAGCTTCTCTAATTTTAATACTCAAGGAAGGTTTTGGATACCAACGCCGGCTCAGATCCTTGTCGGTCCGATGCAATTTGCTTGCTCCATCTGCAACAAATCTTTTAATAGATACAATAACATGCAGATGCACATGTGGGGACATGGCTCGGAGTACAGAAAAGGCCCCGAATCTCTTAGAGGATCACAGCCAGCAGCAATGCTAAGGCTACCATGTTATTGCTGTGCTCATGGGTGCAAGAACAACATTAATCATCCAAGAGCCAAGCCATTGAAGGACTTTAGAACTCTTCAAACCCATTACAAAAGGAAGCATGGATCTAAGCCATTTATGTGTAGAAAATGTGGCAAAACTTTGGCTGTTAAAGGAGATTGGAGAACCCATGAAAAGAATTGTGGGAAGCTTTGGTATTGCAGCTGTGGCTCAGATTTCAAACATAAAAGATCTCTTAAAGATCATATTAGATCCTTTGGAAAAGGCCATAACCCTACCTGCCCTCTTGATGGGTTTGAAGATGACAAAGAATGCCTCACTGGGTCTGATCAAGAACATGAGTTTGCTACTCATTATTAG 924 42.1 MGLRNHMAQENHITFIEWLKPSISLSSSLSSSSSSSSDQDLISPTTAQRCLPLFTEKDEERGRIRDRERKSLGIKEEDEDLVKVEVGLHIGLPNVGDVPNFGDGNMNGFVKKEEMKKSFSNFNTQGRFWIPTPAQILVGPMQFACSICNKSFNRYNNMQMHMWGHGSEYRKGPESLRGSQPAAMLRLPCYCCAHGCKNNINHPRAKPLKDFRTLQTHYKRKHGSKPFMCRKCGKTLAVKGDWRTHEKNCGKLWYCSCGSDFKHKRSLKDHIRSFGKGHNPTCPLDGFEDDKECLTGSDQEHEFATHY 307
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
20 5474374 5476652 + Cp4.1LG20g06930.1 Cpe20g00697 487326
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe20g00697 307 Gene3D Classic Zinc Finger 142 165 - -
Cpe20g00697 307 PANTHER ZINC FINGER PROTEIN WIP2 47 302 IPR043584 GO:0003700|GO:0010468
Cpe20g00697 307 SMART c2h2final6 143 165 IPR013087 -
Cpe20g00697 307 SMART c2h2final6 227 247 IPR013087 -
Cpe20g00697 307 SMART c2h2final6 190 222 IPR013087 -
Cpe20g00697 307 PANTHER ZINC FINGER PROTEIN WIP3-LIKE 47 302 - -
Cpe20g00697 307 ProSiteProfiles Zinc finger C2H2 type domain profile. 143 170 IPR013087 -
Cpe20g00697 307 ProSitePatterns Zinc finger C2H2 type domain signature. 145 165 IPR013087 -
Cpe20g00697 307 SUPERFAMILY beta-beta-alpha zinc fingers 134 166 IPR036236 -
Cpe20g00697 307 SUPERFAMILY beta-beta-alpha zinc fingers 212 247 IPR036236 -
Cpe20g00697 307 Gene3D Classic Zinc Finger 223 282 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe06g00929 Cpe-Chr6:6880916 Cpe20g00697 Cpe-Chr20:5474374 1.05E-28 dispersed
Cpe19g00081 Cpe-Chr19:598309 Cpe20g00697 Cpe-Chr20:5474374 1.02E-103 dispersed
Cpe20g00697 Cpe-Chr20:5474374 Cpe10g01159 Cpe-Chr10:8500987 1.76E-104 transposed
Cpe20g00697 Cpe-Chr20:5474374 Cpe05g00504 Cpe-Chr5:2977391 2.03E-96 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
51152 None None None None Cpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe20g00697 - - bhj:120082596 482.256