Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe20g00716 ATGTCTAGTGGGCGCGGTGGTCGTGGTCGTGGTGCCGGAGGTCGTGGAGGGCAGTCATCTCCGGCAATTTCTCGCGGTGGTGGTGGTAGAAGTGGCGGAGGTAGAGGTGGTCAAGGCGGTGGTGGAAGAGGTGGTCAAGGCGGTGGGGGAAGAGGTGGTCGAGGCGGCGGTGGGAGAGATGGAGGTCGGGTGGATCATCCGGCTACACAGCAGTTTCCTTCTCCGACTCCTCAGCCTACTCCGGTTGCTTCCCGTCCTCCACTCGAGACATCTGCGGGAGCATCTTCTTCATCTTCTACAACTGCTGCTCTTTCACAGCCGGAGGCTTCTTCTTCGAGGATCGAGGCACAGTTGGAGAAGACATTGGTACTGCAGAATGTTCCGCCGTCTTCATCTAAGGCTATGACTGTGGCTAAGAGACCGGGATATGGAACCATTGGGCGCAAAGTTGTTGTTCGGGCTAATCATTTTCTGGTACAAGTTGAAGATAAAGATCTCTACCATTACGATGTTTCTATTACACCTGAGGTTACATCCAAAAAGGTCTGCCGAGACATAATACACCAGCTTGCAAAAATGTACAAAGAATCTCATTTAGGTGGAAGATTTCTAGCATATGATGGTGGGAAAAGTGTTTATGTTGCTGGTGAACTTCCATTTGTGTCCAAAGAGTTTCTTATTAAATTAGTCCGTAATGATGATGCCGGGTCTTCTCAACCAAAAAGGAAAGAACGTGAATTCAAAGTAACTATCAAATTTGCTTCCAAGCCAGACCTCAATCATCTACAACAGTTTTTACATGGACGGCAGCGAGATGCTCCTCAAGAAACTATCCAAGTTCTTGATGTAGTTCTGAGAACTACACCATCTATCCATTGCACAGTTGTTGGAAGGTCATTTTTCTCAACCGAGTTCGGAAAACCAGGTGAACTTGGTAATGGTGTTGAGTATTGGAGAGGATATTATCAAAGTCTGCGACCTGTACAAATGGGTCTATCTTTAAATATAGATGTGTCAGCCAGATCATTTTATGAACCAATATATGTGACAGATTATATTTCTAAACATTTCAATTTGAGGAATTTGCGAACAGCAACTGATCAGGATTTCCGGAAGATAAAAAAAGTACTTAGAGGTGTGAAGGTGGCATTAATGTGTGGGGAGCATGCCAGGACGTACAAAATTACTGGGATATCATCAGAGCCTGTAGACAGATTAATGTTTACTCTTGATAATCAGAGTACCCGAATCTCTGTTAGTCAATACTTTCTTGAAAAATATGGTGTTAAGCTCAGGTCAGCATTTCTACCTGCTATTCAAGCTGGTAATGATGCAAAGCCCATCTATTTGCCTATGGAGCTTTGTAGAATTGTTAACGGGCAGAGATATACCAAAAAGTTGAATGAACGGCAAGTAACTGAGCTGTTAAGAGCGACTTGTCAGAGACCTGAGAATAGGGAATGGAGTATAAAGACGATGGTTGAAGGGAATAGGTATAATACTGATGACATTGTTAAGGATTTTGGCATTGAAGTTAGATCAGAGTTATGTAATGTTGATGCTCGTGTTTTGCCATCCCCATCGCTCAGTTATCATGAAACAGGTGGAGAATCAAGGGTTGATCCACGGATGGGTCAGTGGAATATGATTAATAAGAAAATGATCAATGGTGGTACAGTAGAACATTGGGCATGTGTGACCTTCTCCTCACGGTTGGATAAAGATTTGCCATCTGAATTTTGCAAGCAGTTGGTTAACATGTGCAGAAGCAAAGGAATTGCTTTTGCCCCTGCTCCGTTGTTTCCCATACGTGCTGCACATCCAAATCAAATTGACACTACGCTTAGAGGTATTCATAAGGACTCTGTAAACATTTTGGGACCCAAGGGCAAGTCTCTTCAGCTACTCATAATTATTTTACCTGATGTTACTGGTTCTTATGGGAAGATTAAAAGGATTTGCGAGACAGAACTCGGAATTGTTTCACAATGTTGCCAGCCTAGGCAGGCACAGAAGCTAAACAAGCAATATTTTGAAAATGTGGCTCTTAAAATCAACGTTAAGGTTGGGGGAAGAAACAATGTCCTAACTGATGCTATTCTTCGTAAAATTCCTGTTGTCTCGGAGAAGCCTACAATAATCTTTGGAGCAGATGTCACGCACCCGCAACCAGGAGAGGACTCTAGTCCTTCAATAGCAGCTGTTGTCGCCTCCATGGACTGGCCTGAGGTAACGAAGTATAGGGGTATTGTTTCAGCCCAAGCTCACCGTGAAGAAATTATACAAGATTTGTACAAACAATTTGAAGATCCTCAAAGAGGGTTGGTGCATGCAGGGATGATTAGGGAGCTTTTCATCGCATTTAGAAGGTCAACGAATTTGAAACCGCACAGAATAATATTCTACAGAGATGGTGTAAGTGAAGGACAATTCTCACAAGTTCTACTTTATGAGATGGATGCAATCAGGAAGGCATGTGCCTCCCTTGAAGCGGATTACCAACCTCCGGTTACCTTTATAGTCGTGCAAAAGAGGCATCATACTCGTCTTTTCCCCACCAGTCGCGATACTGATCGGAGTGGAAACATCCTTCCGGGTACTGTTGTTGATACCAAAATTTGTCATCCAACTGAGTTTGATTTCTATTTAAACAGCCATGCTGGCATACAGGGAACGAGTAGACCGACACATTATCACGTTCTATTCGACGAAAACAATTTCAGTGCGGATGCGATGCAAATGCTTACCAATAATCTATGCTACACGTATGCAAGGTGCACACGGTCTGTTTCCATTGTTCCCCCAGCATACTATGCCCATCTAGCAGCTTTTCGAGCTCGTCACTACATGGAGGGTGATGCATCCGATAGCGGTTCCACGGGTTTGGGCGGCGGGATTGTTCAGGTTCAGCGGATGCCGAACGTAAGGGAGAATGTGAAGGATGTTATGTTTTACTGCTGA 2961 44.14 MSSGRGGRGRGAGGRGGQSSPAISRGGGGRSGGGRGGQGGGGRGGQGGGGRGGRGGGGRDGGRVDHPATQQFPSPTPQPTPVASRPPLETSAGASSSSSTTAALSQPEASSSRIEAQLEKTLVLQNVPPSSSKAMTVAKRPGYGTIGRKVVVRANHFLVQVEDKDLYHYDVSITPEVTSKKVCRDIIHQLAKMYKESHLGGRFLAYDGGKSVYVAGELPFVSKEFLIKLVRNDDAGSSQPKRKEREFKVTIKFASKPDLNHLQQFLHGRQRDAPQETIQVLDVVLRTTPSIHCTVVGRSFFSTEFGKPGELGNGVEYWRGYYQSLRPVQMGLSLNIDVSARSFYEPIYVTDYISKHFNLRNLRTATDQDFRKIKKVLRGVKVALMCGEHARTYKITGISSEPVDRLMFTLDNQSTRISVSQYFLEKYGVKLRSAFLPAIQAGNDAKPIYLPMELCRIVNGQRYTKKLNERQVTELLRATCQRPENREWSIKTMVEGNRYNTDDIVKDFGIEVRSELCNVDARVLPSPSLSYHETGGESRVDPRMGQWNMINKKMINGGTVEHWACVTFSSRLDKDLPSEFCKQLVNMCRSKGIAFAPAPLFPIRAAHPNQIDTTLRGIHKDSVNILGPKGKSLQLLIIILPDVTGSYGKIKRICETELGIVSQCCQPRQAQKLNKQYFENVALKINVKVGGRNNVLTDAILRKIPVVSEKPTIIFGADVTHPQPGEDSSPSIAAVVASMDWPEVTKYRGIVSAQAHREEIIQDLYKQFEDPQRGLVHAGMIRELFIAFRRSTNLKPHRIIFYRDGVSEGQFSQVLLYEMDAIRKACASLEADYQPPVTFIVVQKRHHTRLFPTSRDTDRSGNILPGTVVDTKICHPTEFDFYLNSHAGIQGTSRPTHYHVLFDENNFSADAMQMLTNNLCYTYARCTRSVSIVPPAYYAHLAAFRARHYMEGDASDSGSTGLGGGIVQVQRMPNVRENVKDVMFYC 986
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
20 6089372 6096338 + Cp4.1LG20g07510.1 Cpe20g00716 487345
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe20g00716 986 CDD PAZ_argonaute_like 349 458 - -
Cpe20g00716 986 Pfam Argonaute linker 1 domain 296 345 IPR014811 -
Cpe20g00716 986 Pfam PAZ domain 362 475 IPR003100 GO:0005515
Cpe20g00716 986 Gene3D paz domain 341 463 - -
Cpe20g00716 986 SMART Piwi_a_2 635 951 IPR003165 GO:0003676
Cpe20g00716 986 MobiDBLite consensus disorder prediction 1 112 - -
Cpe20g00716 986 PANTHER ARGONAUTE1 40 968 - -
Cpe20g00716 986 SUPERFAMILY Ribonuclease H-like 630 951 IPR012337 -
Cpe20g00716 986 CDD Piwi_ago-like 504 950 IPR045246 -
Cpe20g00716 986 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2C 40 968 - -
Cpe20g00716 986 Pfam Argonaute linker 2 domain 486 531 IPR032472 -
Cpe20g00716 986 SUPERFAMILY PAZ domain 150 500 IPR036085 GO:0005515
Cpe20g00716 986 SMART PAZ_2_a_3 349 481 IPR003100 GO:0005515
Cpe20g00716 986 MobiDBLite consensus disorder prediction 89 112 - -
Cpe20g00716 986 Gene3D - 523 697 - -
Cpe20g00716 986 ProSiteProfiles PAZ domain profile. 347 459 IPR003100 GO:0005515
Cpe20g00716 986 ProSiteProfiles Piwi domain profile. 635 951 IPR003165 GO:0003676
Cpe20g00716 986 Pfam Piwi domain 637 950 IPR003165 GO:0003676
Cpe20g00716 986 Pfam Mid domain of argonaute 542 620 IPR032473 -
Cpe20g00716 986 SMART DUF1785_2 294 346 IPR014811 -
Cpe20g00716 986 Gene3D - 704 986 IPR036397 GO:0003676
Cpe20g00716 986 Pfam N-terminal domain of argonaute 148 285 IPR032474 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe09g00200 Cpe-Chr9:1159440 Cpe20g00716 Cpe-Chr20:6089372 0 dispersed
Cpe16g00935 Cpe-Chr16:8626015 Cpe20g00716 Cpe-Chr20:6089372 5.83E-151 dispersed
Cpe20g00042 Cpe-Chr20:188486 Cpe20g00716 Cpe-Chr20:6089372 0 dispersed
Cpe20g00716 Cpe-Chr20:6089372 Cpe03g01473 Cpe-Chr3:11678135 0 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe20g00716 K11593 - csv:116403995 1518.44