Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe20g00717 ATGGCGCTCTATCCATCCCTACAACTCATTCGATTCCCTCCTCAAGCACTCTCCTCGTCCTCTCTCCACCTTCTCATTTCTGACCTCGGCTCCGTATCGCGCTTCTTCCGATCTCCATGGCTTTCCTCTTTGCCTCCGTCGCGGAAGTGCAGGATGATTTTATCTTCCAGAACCAAGTGTTTCTCCATGTCCACTGAGGAGGATCAGTGGAGTGAATCGGAAGCGTTGATGTCCGATGTTGACGAAGGGGGAGATCGTGAGGATGATATTGGTGTTCAGCAAGAAAGCTCTGTGGTCTCTGCTGCTTCTGCGCAGAGGATTTCTTCCTCGTCGCCGAGTGATTATCTGTCGCTTGCGATTCGTGAGTCGGTTTATGAGGTATTAGAGGTTAAAGCCAATGGTGCCGTATCTACTAGGAAGATAAACAGACGTCAGCTGTTGAAGTCAAGTGGGCTTCGTCCACGTGATGTCCGGAGTGTTGATCCATCTTTATTTTTGACAAACTCAATGCCTACATTACTGGTCCGTGAAAATGCTATTTTACTTAATCTGGGATCGCTGCGAGCAATAGCTATGCCGGACTGTGTCCTCATATTCGATTATAACCGTCCAGGAGGACAGGCTTTTATTGAATCATTGTTGCCACGATTGAACCCAAAAAGCATGAATGGAGTGCCAGCAATGCCATTTGAACTTGAGGTCGTTGAAGCTGCATTGCTTTCACGAACACAGCGTTTGGAGCAGCGACTAATGAAAGTAGAACCTCGTGTTCAAGCTCTACTTGAGGTATTGCCCAACAAATTAACTGCAGATGTGTTGGAACAACTTCGCATCAGCAAGCAGACTTTGGTAGAATTAGGTTCCAGGGCAGGGGCACTCAGACAAATGCTTCTTGATCTTCTGGAGGACCCGCAAGAAATACGACGCATCTGTATTATGGGAAGAAATTGCACGATTAATAAAGGAAATGATGATGTGGAGTGCTCTCTTCCTTTGGATAAGGAGATTGCTGATGGCAAACGAGGAAGAAGAAATAGAAATGCTGTTGGAAAATTATCTCCAGAGAATCCCCATGACCACGAGGATGGCATAACATGGATGACAAGCAGGCACCAACAGGAGGGTAGGATGCTTGTGATAGTTGGGGCATGTGTCTTCCAGGGCGGGTGCATGCACAAGGGCGATGTATGCGAATCTTGTCATGGTCAGGCGGAAAGGCTTCTGGATTCTGCAAAAGAAATGGAAGATTCTATTGCCGTCAATTTGAGCTCGCGGCGACTAGAGGTTAGCAGAGTAGAATTGCTTCTCCAAGTTGGGACATTTTGTGTGGCTGTTGGCGCTCTGGTCGCAGGTATGCCCTTTAAGAGATATCTTGCATATTCGAATTAG 1389 47.16 MALYPSLQLIRFPPQALSSSSLHLLISDLGSVSRFFRSPWLSSLPPSRKCRMILSSRTKCFSMSTEEDQWSESEALMSDVDEGGDREDDIGVQQESSVVSAASAQRISSSSPSDYLSLAIRESVYEVLEVKANGAVSTRKINRRQLLKSSGLRPRDVRSVDPSLFLTNSMPTLLVRENAILLNLGSLRAIAMPDCVLIFDYNRPGGQAFIESLLPRLNPKSMNGVPAMPFELEVVEAALLSRTQRLEQRLMKVEPRVQALLEVLPNKLTADVLEQLRISKQTLVELGSRAGALRQMLLDLLEDPQEIRRICIMGRNCTINKGNDDVECSLPLDKEIADGKRGRRNRNAVGKLSPENPHDHEDGITWMTSRHQQEGRMLVIVGACVFQGGCMHKGDVCESCHGQAERLLDSAKEMEDSIAVNLSSRRLEVSRVELLLQVGTFCVAVGALVAGMPFKRYLAYSN 462
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
20 6097753 6112729 + Cp4.1LG20g07530.1 Cpe20g00717 487346

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe20g00717 462 CDD Mrs2_Mfm1p-like 127 452 IPR039204 -
Cpe20g00717 462 Gene3D Magnesium transport protein CorA, transmembrane region 204 427 - -
Cpe20g00717 462 Gene3D - 117 201 - -
Cpe20g00717 462 PANTHER RNA SPLICING PROTEIN MRS2, MITOCHONDRIAL 41 338 IPR039204 -
Cpe20g00717 462 MobiDBLite consensus disorder prediction 339 363 - -
Cpe20g00717 462 PANTHER RNA SPLICING PROTEIN MRS2, MITOCHONDRIAL 396 452 IPR039204 -
Cpe20g00717 462 PANTHER MG2+ TRANSPORTER PROTEIN, CORA-LIKE/ZINC TRANSPORT PROTEIN ZNTB-RELATED 41 338 - -
Cpe20g00717 462 PANTHER MG2+ TRANSPORTER PROTEIN, CORA-LIKE/ZINC TRANSPORT PROTEIN ZNTB-RELATED 396 452 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe20g00717 K16075 MRS2, MFM1; magnesium transporter - csv:101219314 591.652
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe20g00717 Cpe-Chr20:6097753 Cpe12g00161 Cpe-Chr12:1043975 2.09E-08 dispersed
Cpe20g00717 Cpe-Chr20:6097753 Cpe07g00680 Cpe-Chr7:5527678 0 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cpe03g00907 CST 1 447 MRS2 Gene Family AT1G16010 84.1 3.4e-205 711.4
Cpe02g01612 CST 1 448 MRS2 Gene Family AT1G16010 83.3 2.4e-203 705.3
Cpe07g00089 . 8 381 MRS2 Gene Family AT1G16010 53.7 3.8e-111 399.1
Cpe12g00161 CST 1 366 MRS2 Gene Family AT5G64560 79.3 8.6e-157 550.4
Cpe17g00172 CST 1 423 MRS2 Gene Family AT5G64560 62.4 1.3e-133 473.4
Cpe15g00049 . 1 374 MRS2 Gene Family AT5G64560 68.1 9.9e-129 457.2
Cpe04g00333 . 39 498 MRS2 Gene Family AT3G19640 64.4 1.0e-149 527.3
Cpe01g00485 . 1 453 MRS2 Gene Family AT3G58970 63.1 2.3e-145 512.7
Cpe14g00327 . 1 441 MRS2 Gene Family AT3G58970 63.9 5.0e-140 495.0
Cpe07g00089 . 9 381 MRS2 Gene Family AT2G03620 66.6 9.7e-133 470.7
Cpe03g00907 CST 13 447 MRS2 Gene Family AT2G03620 53.7 2.2e-113 406.4
Cpe02g01612 CST 13 448 MRS2 Gene Family AT2G03620 52.9 2.9e-113 406.0
Cpe14g00327 . 56 440 MRS2 Gene Family AT4G28580 50.4 2.6e-90 329.7
Cpe01g00485 . 61 452 MRS2 Gene Family AT4G28580 50.1 4.4e-90 328.9
Cpe12g00161 CST 1 328 MRS2 Gene Family AT5G09690 74.9 1.3e-126 449.9
Cpe15g00049 . 1 336 MRS2 Gene Family AT5G09690 64.6 1.1e-107 387.1
Cpe17g00172 CST 1 385 MRS2 Gene Family AT5G09690 60.4 1.5e-106 383.3
Cpe03g00907 CST 40 383 MRS2 Gene Family AT5G09690 50.9 6.8e-78 288.1
Cpe12g00161 CST 23 288 MRS2 Gene Family AT5G09720 66.8 4.3e-87 318.5
Cpe17g00172 CST 23 255 MRS2 Gene Family AT5G09720 63.6 4.0e-77 285.4
Cpe15g00049 . 38 296 MRS2 Gene Family AT5G09720 61.3 6.4e-75 278.1
Cpe03g00907 CST 1 447 MRS2 Gene Family AT1G80900 82.6 7.4e-200 693.7
Cpe02g01612 CST 1 448 MRS2 Gene Family AT1G80900 81.9 4.1e-198 688.0
Cpe07g00089 . 5 381 MRS2 Gene Family AT1G80900 54.4 2.1e-109 393.3
Cpe07g00680 . 114 481 MRS2 Gene Family AT5G22830 75.5 6.8e-148 521.2
Cpe20g00717 . 114 458 MRS2 Gene Family AT5G22830 69.3 1.3e-122 437.2
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004489 1 3 0 1 1 1 3 1 1 1 1 1 2 1 2 3 1 2 2 1 2 1 1 1 1 2 1 1 1 1 41
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe20g00717 Cpe_Chr20 FPKM 11.017344 11.375493 10.775592 11.78567 11.158612 10.305108 10.602293 2.994544 2.955919 3.236457