Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe20g00717 ATGGCGCTCTATCCATCCCTACAACTCATTCGATTCCCTCCTCAAGCACTCTCCTCGTCCTCTCTCCACCTTCTCATTTCTGACCTCGGCTCCGTATCGCGCTTCTTCCGATCTCCATGGCTTTCCTCTTTGCCTCCGTCGCGGAAGTGCAGGATGATTTTATCTTCCAGAACCAAGTGTTTCTCCATGTCCACTGAGGAGGATCAGTGGAGTGAATCGGAAGCGTTGATGTCCGATGTTGACGAAGGGGGAGATCGTGAGGATGATATTGGTGTTCAGCAAGAAAGCTCTGTGGTCTCTGCTGCTTCTGCGCAGAGGATTTCTTCCTCGTCGCCGAGTGATTATCTGTCGCTTGCGATTCGTGAGTCGGTTTATGAGGTATTAGAGGTTAAAGCCAATGGTGCCGTATCTACTAGGAAGATAAACAGACGTCAGCTGTTGAAGTCAAGTGGGCTTCGTCCACGTGATGTCCGGAGTGTTGATCCATCTTTATTTTTGACAAACTCAATGCCTACATTACTGGTCCGTGAAAATGCTATTTTACTTAATCTGGGATCGCTGCGAGCAATAGCTATGCCGGACTGTGTCCTCATATTCGATTATAACCGTCCAGGAGGACAGGCTTTTATTGAATCATTGTTGCCACGATTGAACCCAAAAAGCATGAATGGAGTGCCAGCAATGCCATTTGAACTTGAGGTCGTTGAAGCTGCATTGCTTTCACGAACACAGCGTTTGGAGCAGCGACTAATGAAAGTAGAACCTCGTGTTCAAGCTCTACTTGAGGTATTGCCCAACAAATTAACTGCAGATGTGTTGGAACAACTTCGCATCAGCAAGCAGACTTTGGTAGAATTAGGTTCCAGGGCAGGGGCACTCAGACAAATGCTTCTTGATCTTCTGGAGGACCCGCAAGAAATACGACGCATCTGTATTATGGGAAGAAATTGCACGATTAATAAAGGAAATGATGATGTGGAGTGCTCTCTTCCTTTGGATAAGGAGATTGCTGATGGCAAACGAGGAAGAAGAAATAGAAATGCTGTTGGAAAATTATCTCCAGAGAATCCCCATGACCACGAGGATGGCATAACATGGATGACAAGCAGGCACCAACAGGAGGGTAGGATGCTTGTGATAGTTGGGGCATGTGTCTTCCAGGGCGGGTGCATGCACAAGGGCGATGTATGCGAATCTTGTCATGGTCAGGCGGAAAGGCTTCTGGATTCTGCAAAAGAAATGGAAGATTCTATTGCCGTCAATTTGAGCTCGCGGCGACTAGAGGTTAGCAGAGTAGAATTGCTTCTCCAAGTTGGGACATTTTGTGTGGCTGTTGGCGCTCTGGTCGCAGGTATGCCCTTTAAGAGATATCTTGCATATTCGAATTAG 1389 47.16 MALYPSLQLIRFPPQALSSSSLHLLISDLGSVSRFFRSPWLSSLPPSRKCRMILSSRTKCFSMSTEEDQWSESEALMSDVDEGGDREDDIGVQQESSVVSAASAQRISSSSPSDYLSLAIRESVYEVLEVKANGAVSTRKINRRQLLKSSGLRPRDVRSVDPSLFLTNSMPTLLVRENAILLNLGSLRAIAMPDCVLIFDYNRPGGQAFIESLLPRLNPKSMNGVPAMPFELEVVEAALLSRTQRLEQRLMKVEPRVQALLEVLPNKLTADVLEQLRISKQTLVELGSRAGALRQMLLDLLEDPQEIRRICIMGRNCTINKGNDDVECSLPLDKEIADGKRGRRNRNAVGKLSPENPHDHEDGITWMTSRHQQEGRMLVIVGACVFQGGCMHKGDVCESCHGQAERLLDSAKEMEDSIAVNLSSRRLEVSRVELLLQVGTFCVAVGALVAGMPFKRYLAYSN 462
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
20 6097753 6112729 + Cp4.1LG20g07530.1 Cpe20g00717 487346
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe20g00717 462 CDD Mrs2_Mfm1p-like 127 452 IPR039204 -
Cpe20g00717 462 Gene3D Magnesium transport protein CorA, transmembrane region 204 427 - -
Cpe20g00717 462 Gene3D - 117 201 - -
Cpe20g00717 462 PANTHER RNA SPLICING PROTEIN MRS2, MITOCHONDRIAL 41 338 IPR039204 -
Cpe20g00717 462 MobiDBLite consensus disorder prediction 339 363 - -
Cpe20g00717 462 PANTHER RNA SPLICING PROTEIN MRS2, MITOCHONDRIAL 396 452 IPR039204 -
Cpe20g00717 462 PANTHER MG2+ TRANSPORTER PROTEIN, CORA-LIKE/ZINC TRANSPORT PROTEIN ZNTB-RELATED 41 338 - -
Cpe20g00717 462 PANTHER MG2+ TRANSPORTER PROTEIN, CORA-LIKE/ZINC TRANSPORT PROTEIN ZNTB-RELATED 396 452 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe20g00717 Cpe-Chr20:6097753 Cpe12g00161 Cpe-Chr12:1043975 2.09E-08 dispersed
Cpe20g00717 Cpe-Chr20:6097753 Cpe07g00680 Cpe-Chr7:5527678 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe20g00717 K16075 - csv:101219314 591.652