Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cpe20g00722 | ATGGGTCAGATCCAGTACTCTGAGAAATACTTTGATGATATCTATGAGTACAGGCATGTCGTGCTTACTCCTGATGTGGCGAAACTTCTGCCCAAGAATCGCCTTCTTTCTGAGAATGAATGGCGAGCGATTGGGGTTCAGCAGAGCCGTGGATGGGTGCATTATGCAATTCACCGCCCAGAGCCGCACATAATGCTGTTCAGGAGGCCACTCAACTATCAACAGCAGCAAGAGAATCAAGCTCAGCAGCAGATTCTGGCGAAGTGA | 267 | 49.06 | MGQIQYSEKYFDDIYEYRHVVLTPDVAKLLPKNRLLSENEWRAIGVQQSRGWVHYAIHRPEPHIMLFRRPLNYQQQQENQAQQQILAK | 88 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 20 | 6140620 | 6142239 | + | Cp4.1LG20g07420.1 | Cpe20g00722 | 487351 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cpe20g00722 | 88 | ProSitePatterns | Cyclin-dependent kinases regulatory subunits signature 1. | 6 | 24 | IPR000789 | GO:0016538 | |
| Cpe20g00722 | 88 | PANTHER | CYCLIN-DEPENDENT KINASES REGULATORY SUBUNIT/60S RIBOSOME SUBUNIT BIOGENESIS PROTEIN NIP7 | 1 | 86 | - | - | |
| Cpe20g00722 | 88 | SUPERFAMILY | Cell cycle regulatory proteins | 1 | 83 | IPR036858 | GO:0016538 | |
| Cpe20g00722 | 88 | PANTHER | CYCLIN-DEPENDENT KINASES REGULATORY SUBUNIT | 1 | 86 | - | - | |
| Cpe20g00722 | 88 | Gene3D | - | 1 | 84 | IPR036858 | GO:0016538 | |
| Cpe20g00722 | 88 | PRINTS | Cyclin-dependent kinase regulatory subunit signature | 3 | 17 | IPR000789 | GO:0016538 | |
| Cpe20g00722 | 88 | PRINTS | Cyclin-dependent kinase regulatory subunit signature | 18 | 32 | IPR000789 | GO:0016538 | |
| Cpe20g00722 | 88 | PRINTS | Cyclin-dependent kinase regulatory subunit signature | 40 | 54 | IPR000789 | GO:0016538 | |
| Cpe20g00722 | 88 | PRINTS | Cyclin-dependent kinase regulatory subunit signature | 55 | 69 | IPR000789 | GO:0016538 | |
| Cpe20g00722 | 88 | Pfam | Cyclin-dependent kinase regulatory subunit | 4 | 70 | IPR000789 | GO:0016538 | |
| Cpe20g00722 | 88 | SMART | CKS_2 | 3 | 72 | IPR000789 | GO:0016538 |
Event-related genes
| Select | Gene_1 | Gene_2 | Event_name |
|---|---|---|---|
| Cpe16g00498 | Cpe20g00722 | CCT |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cpe16g00498 | Cpe-Chr16:6045725 | Cpe20g00722 | Cpe-Chr20:6140620 | 3.45E-50 | wgd | |
| Cpe20g00722 | Cpe-Chr20:6140620 | Cpe05g00396 | Cpe-Chr5:2243788 | 4.19E-51 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cpe20g00722 | K02219 | - | csv:101204120 | 159.458 |