Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe20g00726 ATGCCTTTCTCTTCTGATTTCCATTCAACTTCCCTCCTTTACAACCTCTCTATTTTGAAGGACAAGCTCCACCAAATCCAATCCGTTGTCTCCCTCGTCGTCTACGACTTTCAAAACTCGACCGAGTCCCTCCCTCGAGACTTGTCGCAGTTACCGACGGTCAACTCTCTGATCCAGGAACTCATCATGGCTGCTTCTTCCATGTTGTTCACATGTCAAGAGATGAATAACTTCGCTGTGAACTCGTCGTTACATAACGATGTTGTCGATAATAATCTCCAAGACGCGACAGATCTTCTTGCAAAATACACCCATTATTGCCAAATTTGCGGGAAAGGGTTCAAGCGGGACGCGAACCTACGAATGCACATGCGAGCACACGGGGACGAGTACAAAGCGAGCGGGGCGTTGAGTAACCCGGAGAAGAGTCATAGAAGGGATATGAACATAAACAAGAAATTAGGGACTAAATACTCATGTCCACAAGAGGGCTGCAGATGGAACCAAAAACATGCCAAGTTTCAGCCGTTGAAATCACTGATTTGTGTGAAAAATCATTACAAGAGAACCCATTGCCCCAAAATGTATGTCTGCAAGCTCTGCAGCGGCAAGAAATTTTCAGTGCTATCAGATTTGAGGACTCATGAGAAACACTGTGGAGACATGAAATGGGTTTGTTCTTGTGGCACCACATTTTACAGGAAAGATAAGCTCATGGGTCATGTCGCTCTGTTCGTCGGGCATGCCCCGGCAATCAGTTCGTCGGTAAGAGCGTAG 777 46.33 MPFSSDFHSTSLLYNLSILKDKLHQIQSVVSLVVYDFQNSTESLPRDLSQLPTVNSLIQELIMAASSMLFTCQEMNNFAVNSSLHNDVVDNNLQDATDLLAKYTHYCQICGKGFKRDANLRMHMRAHGDEYKASGALSNPEKSHRRDMNINKKLGTKYSCPQEGCRWNQKHAKFQPLKSLICVKNHYKRTHCPKMYVCKLCSGKKFSVLSDLRTHEKHCGDMKWVCSCGTTFYRKDKLMGHVALFVGHAPAISSSVRA 258
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
20 6157225 6158315 - Cp4.1LG20g07360.1 Cpe20g00726 487355
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe20g00726 258 ProSiteProfiles Zinc finger C2H2 type domain profile. 105 132 IPR013087 -
Cpe20g00726 258 SMART c2h2final6 196 218 IPR013087 -
Cpe20g00726 258 SMART c2h2final6 105 127 IPR013087 -
Cpe20g00726 258 SMART c2h2final6 158 191 IPR013087 -
Cpe20g00726 258 PANTHER PROTEIN SENSITIVE TO PROTON RHIZOTOXICITY 1 95 255 IPR044300 GO:0010044|GO:0010447
Cpe20g00726 258 PANTHER PROTEIN SENSITIVE TO PROTON RHIZOTOXICITY 1 5 83 IPR044300 GO:0010044|GO:0010447
Cpe20g00726 258 Gene3D Classic Zinc Finger 90 163 - -
Cpe20g00726 258 PANTHER OS08G0562300 PROTEIN 95 255 - -
Cpe20g00726 258 ProSitePatterns Zinc finger C2H2 type domain signature. 107 127 IPR013087 -
Cpe20g00726 258 Gene3D Classic Zinc Finger 194 244 - -
Cpe20g00726 258 SUPERFAMILY beta-beta-alpha zinc fingers 103 129 IPR036236 -
Cpe20g00726 258 Pfam Zinc finger, C2H2 type 105 127 IPR013087 -
Cpe20g00726 258 PANTHER OS08G0562300 PROTEIN 5 83 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe02g00925 Cpe-Chr2:7447298 Cpe20g00726 Cpe-Chr20:6157225 2.06E-71 dispersed
Cpe19g00758 Cpe-Chr19:5830957 Cpe20g00726 Cpe-Chr20:6157225 3.50E-69 dispersed
Cpe20g00726 Cpe-Chr20:6157225 Cpe01g01767 Cpe-Chr1:13481581 8.07E-26 dispersed
Cpe20g00726 Cpe-Chr20:6157225 Cpe06g00929 Cpe-Chr6:6880916 1.46E-73 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
51154 PF00096 zf-C2H2 5.90E-05 CL0361 Cpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe20g00726 - - cmos:111464900 488.419