Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe20g00740 ATGGAACATAGTTATGGATTTGAACATGTCGCTCAACAAAGCCGGCGTGATAAGCTAAGAGTATCAAGAAACTCTGATGAACAATTGAGTTTTCAAAACTCAGGGCATTCTGGTTTTGATCTAGATCTTGTTAGAATTCAAAATTTTAACAAGAATTCGATTTTGCCTTCAGTTATGATCAATTTCTCGAGAGATTCGGACATAATGTTGAGCCAAGAACTTGTGGGAGATGCTTCGTTGGGTTCTGTTTCCAATTATTGGAAAACTTCTGATTGGGAGATGAACTGTGGAAATAATTGTTTGGGAGGTGAAATGTTGAATGATTCCACAGTTTATACACTTCAAGATGTTGTTAACCAAACTGCTGCTTGTGAAGGCCGTGGAAATGAGCCAAACGTGTTGCCTTATGACACTACTGGTTTTGTGAGTGATTCCAATCCACAACGTCTAGCGCTGTCTCTGTCTTCTAATACACAGTTTCAAGAATCAGAGGAATCCAAAACAGTCAAATCTGAAACTATTGGTAACAAAAATTATGGGAAATCTCTTCAAAATATGATGGGAGTTTCTATGAATCCATATAGAAACACTGGTCCTCTTGGTCCCTTTACTGGATACAAACAATATCATCAGCAAATGCAAATGGTAGTGTCATCGTTTGAATCAGTAGCTGGTCTTAGTTCTTCGACGCCTTACATTTCTCTGGCGCTAAAGACAGTGTCAAGACACTTCCAGTCTCTAAAGAATGCCATCTCCGAACAATTGAAGTATCTGAGGAAGGTAGTTGGTGAGGATTCGTCGTCCATCTCTGCTGGGACAAGCGGCAGGAAATACATGGAACAGAGCTTCCAAAAGCAAAAAACTGGCATTGTTAATATCGGATTCCTCGAATCCCAAAATGTTTGGAGGCCGCAGAGAGGCTTGCCTGAACGTGCTGTGGCAATTCTTAGAGCCTGGCTCTTTGAGCATTTTCTTCACCCGTACCCCACGGACACAGATAAACACATGTTGGCCACTCAAACAGGCTTATCTCGAAACCAGGTGTCGAATTGGTTCATAAATGCACGAGTGCGGGTGTGGAAGCCAATGGTAGAAGAGATACACATGCTAGAAACCAAGAGCATGGCAGAAATGAACAACAAAGGCCATGTTACAATAGAAAACACAGCCGGTTGGACCAGTAGTGAACAACAGCCTCTAAAAAGCCATGGTGTTGTGAATGAAATTACTAGTCAGTGGGATCAAGGCAAACCATCCAAATTGGACAATGGGGTTCAGTCCAACACGGAAGGAGAATTGATGGGGTTCGTGCCATATCGAGCCAGCACGGTCGACGTCGGAGGAGTCGGAGCAGTCTCTCTAACATTAGGCCTTCGCCACCGAGTCGAGAGTGCTCACCATCAACAGCAGCAACAAGATGAGCAACTACTACGCCATTATGGAAGTGAAATGATCCATGATTTTGTGGGGTAA 1473 43.04 MEHSYGFEHVAQQSRRDKLRVSRNSDEQLSFQNSGHSGFDLDLVRIQNFNKNSILPSVMINFSRDSDIMLSQELVGDASLGSVSNYWKTSDWEMNCGNNCLGGEMLNDSTVYTLQDVVNQTAACEGRGNEPNVLPYDTTGFVSDSNPQRLALSLSSNTQFQESEESKTVKSETIGNKNYGKSLQNMMGVSMNPYRNTGPLGPFTGYKQYHQQMQMVVSSFESVAGLSSSTPYISLALKTVSRHFQSLKNAISEQLKYLRKVVGEDSSSISAGTSGRKYMEQSFQKQKTGIVNIGFLESQNVWRPQRGLPERAVAILRAWLFEHFLHPYPTDTDKHMLATQTGLSRNQVSNWFINARVRVWKPMVEEIHMLETKSMAEMNNKGHVTIENTAGWTSSEQQPLKSHGVVNEITSQWDQGKPSKLDNGVQSNTEGELMGFVPYRASTVDVGGVGAVSLTLGLRHRVESAHHQQQQQDEQLLRHYGSEMIHDFVG 490
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
20 6328594 6332749 - Cp4.1LG20g07180.1 Cpe20g00740 487369
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe20g00740 490 SMART prehox3 145 253 IPR006563 -
Cpe20g00740 490 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 206 462 - -
Cpe20g00740 490 Pfam Homeobox KN domain 319 358 IPR008422 GO:0003677|GO:0006355
Cpe20g00740 490 ProSiteProfiles 'Homeobox' domain profile. 299 362 IPR001356 GO:0003677
Cpe20g00740 490 SUPERFAMILY Homeodomain-like 304 369 IPR009057 -
Cpe20g00740 490 Pfam Associated with HOX 205 252 IPR006563 -
Cpe20g00740 490 CDD homeodomain 302 363 IPR001356 GO:0003677
Cpe20g00740 490 SMART HOX_1 302 366 IPR001356 GO:0003677
Cpe20g00740 490 Gene3D - 305 367 - -
Cpe20g00740 490 PANTHER BEL1-LIKE HOMEODOMAIN PROTEIN 8 206 462 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe19g00315 Cpe-Chr19:2732723 Cpe20g00740 Cpe-Chr20:6328594 9.57E-57 dispersed
Cpe20g00740 Cpe-Chr20:6328594 Cpe03g00311 Cpe-Chr3:1597464 1.41E-58 dispersed
Cpe02g01326 Cpe-Chr2:11751697 Cpe20g00740 Cpe-Chr20:6328594 3.16E-24 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
51155 PF07526 POX 5.80E-20 No_clan Cpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe20g00740 - - cmax:111469309 545.814