Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe20g00754 ATGGACGCAAAATCCAGCCCAACTTCAACCATCTTCCGTTCTCAGTCGCCGTCGTCGTCCCCATTACCGCCGCCTCCGAGTGTTCAGGCCGGCTTGGTGGTCAGTCCGTGTGCTGCGTGCAAGACTCTGAGGCGGAGATGCACAGAGAAATGCGTATTGGCGCCCTATTTCCCTCCCTCTGATCCTCTCAAGTTTACCATTGCTCACCGTATCTTCGGCGCTAGCAACATCATCAAATTGCTTCAGGATCTTCCTGAATCACAGAGAATTGATGCAGTGAGTAGCTTGGTATACGAAGCAAGCGCAAGAATCAGAGATCCAGTATATGGATGTGCAGGGGCCATTTCCCAGCTCCAAAAACAAATAAACGAACTGCAAGCAGAGCTAGCCAAAACACAGGCTGAGCTTGTCAACATCCACAGCCACCAAACAAATTTGGTGGCTCTAATTTGCAAGGAACTAGCTCAAACACCACCACCGGTGTCGCCCCCGGACCACCTCGCACTCGACAACAATCTCAACACTGCCACTCCTCAGAGCTACACAAATTTGTTTGAAGATAGCAGTATTTGGGAGCCTCTTTGGACATGA 591 50.59 MDAKSSPTSTIFRSQSPSSSPLPPPPSVQAGLVVSPCAACKTLRRRCTEKCVLAPYFPPSDPLKFTIAHRIFGASNIIKLLQDLPESQRIDAVSSLVYEASARIRDPVYGCAGAISQLQKQINELQAELAKTQAELVNIHSHQTNLVALICKELAQTPPPVSPPDHLALDNNLNTATPQSYTNLFEDSSIWEPLWT 196
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
20 6701146 6702821 + Cp4.1LG20g09100.1 Cpe20g00754 487383
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe20g00754 196 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 17 195 - -
Cpe20g00754 196 Coils Coil 115 142 - -
Cpe20g00754 196 ProSiteProfiles LOB domain profile. 35 136 IPR004883 -
Cpe20g00754 196 PANTHER LOB DOMAIN-CONTAINING PROTEIN 1 17 195 - -
Cpe20g00754 196 MobiDBLite consensus disorder prediction 1 27 - -
Cpe20g00754 196 Pfam Lateral organ boundaries (LOB) domain 36 133 IPR004883 -
Cpe20g00754 196 MobiDBLite consensus disorder prediction 1 17 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe05g00866 Cpe-Chr5:5685489 Cpe20g00754 Cpe-Chr20:6701146 1.39E-71 dispersed
Cpe13g00820 Cpe-Chr13:7303134 Cpe20g00754 Cpe-Chr20:6701146 9.72E-60 dispersed
Cpe16g00556 Cpe-Chr16:6368390 Cpe20g00754 Cpe-Chr20:6701146 8.20E-75 dispersed
Cpe20g00593 Cpe-Chr20:3637867 Cpe20g00754 Cpe-Chr20:6701146 1.01E-50 dispersed
Cpe01g01139 Cpe-Chr1:6773070 Cpe20g00754 Cpe-Chr20:6701146 1.81E-73 wgd
Cpe01g00236 Cpe-Chr1:1342584 Cpe20g00754 Cpe-Chr20:6701146 3.27E-70 wgd
Cpe02g01297 Cpe-Chr2:11546733 Cpe20g00754 Cpe-Chr20:6701146 1.19E-51 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
51157 PF03195 LOB 1.30E-40 No_clan Cpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe20g00754 - - csv:101222262 306.219