Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cpe20g00766 | ATGGATCCCGATGCAGAAGTAATAGCAATGTCACCAAAGTCTCTAATGGCGAAGAATAGATTCATTTGTGAGATATGCAAAAAGGGATTTCAAAGAGACCAGAATTTGCAGCTCCACCGGCGAGGGCACAACCTGCCATGGAAGCTCCGGCAGAGGACGAGCAACGAGGTGAGGAAGAAGGTGTACGTGTGCCCGGAGAAGAGTTGTGTTCACCACGACCCGTCGAGAGCGCTCGGCGACCTCACCGGAATCAAGAAACACTACAGCCGGAAGCACGGTGAGAAGAAGTGGAAGTGTGAGAAATGCTCTAAGAAGTATGCTGTTCAGTCGGATTGGAAGGCTCATTCCAAAATTTGTGGGACAAAGGAATACAAATGTGACTGTGGGACTCTCTTCTCCAGGAAGGATAGCTTCATCACTCACAGAGCATTTTGTGATGCATTAGCCGAAGAAAATTCAAGAATCTCCACAGTTTCAACTCTAAATCATCATCCAACCTTCATCAACAACTTTTCTCCTTCTCCTTCTTCTTCTTCACTAATTTTCCGGCCAAACTTCCCCACCACCACCGTGAATCACTCCAATGTTATCTCTGACCATGGCGGCGACGACCACAAGCCCCGGCAACTGCCACTGTCGCCGCCGCAGCTCCCTCTCTGGCTCGACCCTCCACAAAATCCCAACCCCTTTTTCTCCACCGCCTTCTCCGACCACCCTCCATTATTCTTGCCGGAAAATCAGCAATCTTTCTTTTCCGAGCCACTAACGACGACCTCCTCGTACCCGCCGCCACCCCACATGTCCGCCACCGCGCTCCTCCAGAAAGCATCTCAAATGGGGCCCACCAGAACGCCCCCCACGCCGCCAATTCTCTTCAACAACACCACCGCCGTCACAGCATATGGAATGAACAACTCCGCCGCCGCTACCGCCGTCATGTCGGATGGCCGTCCGATGATGAAGCCGATAATGGGTGGCGCAAAAGAAGAAATTGGAGGGCAGAATTTAACCAGAGACTTCCTCGGCGTCGGAAATCAGCCGGTGCATCTCACGCCGGCGGGATCCAATCAATACAGTGATCAAAGCCGCCGCCATTAG | 1098 | 52.28 | MDPDAEVIAMSPKSLMAKNRFICEICKKGFQRDQNLQLHRRGHNLPWKLRQRTSNEVRKKVYVCPEKSCVHHDPSRALGDLTGIKKHYSRKHGEKKWKCEKCSKKYAVQSDWKAHSKICGTKEYKCDCGTLFSRKDSFITHRAFCDALAEENSRISTVSTLNHHPTFINNFSPSPSSSSLIFRPNFPTTTVNHSNVISDHGGDDHKPRQLPLSPPQLPLWLDPPQNPNPFFSTAFSDHPPLFLPENQQSFFSEPLTTTSSYPPPPHMSATALLQKASQMGPTRTPPTPPILFNNTTAVTAYGMNNSAAATAVMSDGRPMMKPIMGGAKEEIGGQNLTRDFLGVGNQPVHLTPAGSNQYSDQSRRH | 365 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
20 | 6826444 | 6829274 | + | Cp4.1LG20g09110.1 | Cpe20g00766 | 487395 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cpe20g00766 | 365 | PANTHER | SERINE/THREONINE-PROTEIN KINASE RIO | 2 | 349 | - | - | |
Cpe20g00766 | 365 | SUPERFAMILY | beta-beta-alpha zinc fingers | 20 | 117 | IPR036236 | - | |
Cpe20g00766 | 365 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 23 | 43 | IPR013087 | - | |
Cpe20g00766 | 365 | Gene3D | Classic Zinc Finger | 55 | 145 | - | - | |
Cpe20g00766 | 365 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 21 | 43 | IPR013087 | - | |
Cpe20g00766 | 365 | PANTHER | PROTEIN INDETERMINATE-DOMAIN 13-RELATED | 2 | 349 | - | - | |
Cpe20g00766 | 365 | MobiDBLite | consensus disorder prediction | 344 | 365 | - | - | |
Cpe20g00766 | 365 | SMART | c2h2final6 | 97 | 117 | IPR013087 | - | |
Cpe20g00766 | 365 | SMART | c2h2final6 | 62 | 92 | IPR013087 | - | |
Cpe20g00766 | 365 | SMART | c2h2final6 | 21 | 43 | IPR013087 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cpe20g00766 | Cpe-Chr20:6826444 | Cpe03g00175 | Cpe-Chr3:867681 | 4.43E-108 | dispersed | |
Cpe19g00403 | Cpe-Chr19:3582056 | Cpe20g00766 | Cpe-Chr20:6826444 | 1.13E-107 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
51158 | None | None | None | None | Cpe | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cpe20g00766 | K25870 | - | csv:101212420 | 526.554 |