Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe20g00766 ATGGATCCCGATGCAGAAGTAATAGCAATGTCACCAAAGTCTCTAATGGCGAAGAATAGATTCATTTGTGAGATATGCAAAAAGGGATTTCAAAGAGACCAGAATTTGCAGCTCCACCGGCGAGGGCACAACCTGCCATGGAAGCTCCGGCAGAGGACGAGCAACGAGGTGAGGAAGAAGGTGTACGTGTGCCCGGAGAAGAGTTGTGTTCACCACGACCCGTCGAGAGCGCTCGGCGACCTCACCGGAATCAAGAAACACTACAGCCGGAAGCACGGTGAGAAGAAGTGGAAGTGTGAGAAATGCTCTAAGAAGTATGCTGTTCAGTCGGATTGGAAGGCTCATTCCAAAATTTGTGGGACAAAGGAATACAAATGTGACTGTGGGACTCTCTTCTCCAGGAAGGATAGCTTCATCACTCACAGAGCATTTTGTGATGCATTAGCCGAAGAAAATTCAAGAATCTCCACAGTTTCAACTCTAAATCATCATCCAACCTTCATCAACAACTTTTCTCCTTCTCCTTCTTCTTCTTCACTAATTTTCCGGCCAAACTTCCCCACCACCACCGTGAATCACTCCAATGTTATCTCTGACCATGGCGGCGACGACCACAAGCCCCGGCAACTGCCACTGTCGCCGCCGCAGCTCCCTCTCTGGCTCGACCCTCCACAAAATCCCAACCCCTTTTTCTCCACCGCCTTCTCCGACCACCCTCCATTATTCTTGCCGGAAAATCAGCAATCTTTCTTTTCCGAGCCACTAACGACGACCTCCTCGTACCCGCCGCCACCCCACATGTCCGCCACCGCGCTCCTCCAGAAAGCATCTCAAATGGGGCCCACCAGAACGCCCCCCACGCCGCCAATTCTCTTCAACAACACCACCGCCGTCACAGCATATGGAATGAACAACTCCGCCGCCGCTACCGCCGTCATGTCGGATGGCCGTCCGATGATGAAGCCGATAATGGGTGGCGCAAAAGAAGAAATTGGAGGGCAGAATTTAACCAGAGACTTCCTCGGCGTCGGAAATCAGCCGGTGCATCTCACGCCGGCGGGATCCAATCAATACAGTGATCAAAGCCGCCGCCATTAG 1098 52.28 MDPDAEVIAMSPKSLMAKNRFICEICKKGFQRDQNLQLHRRGHNLPWKLRQRTSNEVRKKVYVCPEKSCVHHDPSRALGDLTGIKKHYSRKHGEKKWKCEKCSKKYAVQSDWKAHSKICGTKEYKCDCGTLFSRKDSFITHRAFCDALAEENSRISTVSTLNHHPTFINNFSPSPSSSSLIFRPNFPTTTVNHSNVISDHGGDDHKPRQLPLSPPQLPLWLDPPQNPNPFFSTAFSDHPPLFLPENQQSFFSEPLTTTSSYPPPPHMSATALLQKASQMGPTRTPPTPPILFNNTTAVTAYGMNNSAAATAVMSDGRPMMKPIMGGAKEEIGGQNLTRDFLGVGNQPVHLTPAGSNQYSDQSRRH 365
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
20 6826444 6829274 + Cp4.1LG20g09110.1 Cpe20g00766 487395
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe20g00766 365 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 2 349 - -
Cpe20g00766 365 SUPERFAMILY beta-beta-alpha zinc fingers 20 117 IPR036236 -
Cpe20g00766 365 ProSitePatterns Zinc finger C2H2 type domain signature. 23 43 IPR013087 -
Cpe20g00766 365 Gene3D Classic Zinc Finger 55 145 - -
Cpe20g00766 365 ProSiteProfiles Zinc finger C2H2 type domain profile. 21 43 IPR013087 -
Cpe20g00766 365 PANTHER PROTEIN INDETERMINATE-DOMAIN 13-RELATED 2 349 - -
Cpe20g00766 365 MobiDBLite consensus disorder prediction 344 365 - -
Cpe20g00766 365 SMART c2h2final6 97 117 IPR013087 -
Cpe20g00766 365 SMART c2h2final6 62 92 IPR013087 -
Cpe20g00766 365 SMART c2h2final6 21 43 IPR013087 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe20g00766 Cpe-Chr20:6826444 Cpe03g00175 Cpe-Chr3:867681 4.43E-108 dispersed
Cpe19g00403 Cpe-Chr19:3582056 Cpe20g00766 Cpe-Chr20:6826444 1.13E-107 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
51158 None None None None Cpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe20g00766 K25870 - csv:101212420 526.554