Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe20g00780 ATGGAGAACGATTCTTCCGCTATGGAGATTAAAGGGTTTCCCACCTACGACGGCAAGTACTTGCTCTACAACGTTCTCGGCAACTTCTTCGAGGTCTCCGCCAAGTACGCCCCTTCGATTCAACCTGTTGGACGCGGTGCTTACGGCATTGTTTGTTGTACGACCAATTCTGAGACGAAGGAAGAGGTAGCGATAAAGAAGATAGGGAACGCTTTTGATAACCGGATTGATGCCAAGAGGACCCTTCGTGAGATAGAACTCCTATGCCATATGGACCATGACAATATTATAAAAATCAAAGATATAATTCCTCCACCAGAGAAGGAAAAATTCAATGATGTGTATATTGTGTATGAATTAATGGACACTGACCTGCACCAGATCATTCGCTCTAGTCAGGCTCTGACAGACGATCACTGTCAGTACTTCTTATACCAATTACTGCGAGGTTTGAAGTATTTACACTCTGCAAATGTCTTGCACCGAGATCTAAAACCAAGCAATCTGCTTCTCAATGCAAATTGTGACCTCAAGATTTGTGATTTTGGGTTAGCAAGAACAACATCAGAGACAGATTTCATGACAGAATATGTTGTGACACGATGGTATCGAGCGCCTGAGCTTCTACTCAACACTTCTGAATACACTGCAGCGATCGATATTTGGGCTGTTGGATGTATTCTCATGGAAATTCTAAGGAGGGAGCCACTGTTCCCTGGAAAAGACTATTTGCTTGGTTCACCAGATGATTCCGATCTCGGGTTTCTTAGAAGTGATAATGCAAGGAAATACGTTAAGCAACTTCCTCATTTCCCGAAACAACCACTGATTGAAAAATTCCCAGATCTTCCTCCACTGGCTGTTGATCTTGCAGAGAGGATGCTGCTCTTTGATCCAAGCAAGAGAATAACTGTCGAGGAGGCGATGAATCACCCATATATACTAAGTCTTCATGAAATCAATGAAGAACCAACCTGCCCTTCTCCTTTCAACTTCGATTTCGAACAGGCATCCTTGGATGAAGAAGAAATAAAAGAGCTTATATGGAGGGCATCTCTCAAGTTCAATCCAAATTACATGTAG 1083 42.75 MENDSSAMEIKGFPTYDGKYLLYNVLGNFFEVSAKYAPSIQPVGRGAYGIVCCTTNSETKEEVAIKKIGNAFDNRIDAKRTLREIELLCHMDHDNIIKIKDIIPPPEKEKFNDVYIVYELMDTDLHQIIRSSQALTDDHCQYFLYQLLRGLKYLHSANVLHRDLKPSNLLLNANCDLKICDFGLARTTSETDFMTEYVVTRWYRAPELLLNTSEYTAAIDIWAVGCILMEILRREPLFPGKDYLLGSPDDSDLGFLRSDNARKYVKQLPHFPKQPLIEKFPDLPPLAVDLAERMLLFDPSKRITVEEAMNHPYILSLHEINEEPTCPSPFNFDFEQASLDEEEIKELIWRASLKFNPNYM 360
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
20 6989381 6993089 - Cp4.1LG20g08870.1 Cpe20g00780 487409
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe20g00780 360 ProSitePatterns Serine/Threonine protein kinases active-site signature. 159 171 IPR008271 GO:0004672|GO:0006468
Cpe20g00780 360 Gene3D Transferase(Phosphotransferase) domain 1 121 341 - -
Cpe20g00780 360 SUPERFAMILY Protein kinase-like (PK-like) 40 320 IPR011009 -
Cpe20g00780 360 Pfam Protein kinase domain 40 314 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cpe20g00780 360 Gene3D Phosphorylase Kinase; domain 1 20 350 - -
Cpe20g00780 360 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE 16 358 - -
Cpe20g00780 360 ProSiteProfiles Protein kinase domain profile. 37 314 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cpe20g00780 360 SMART serkin_6 40 314 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cpe20g00780 360 ProSitePatterns Protein kinases ATP-binding region signature. 43 67 IPR017441 GO:0005524
Cpe20g00780 360 ProSitePatterns MAP kinase signature. 72 175 IPR003527 GO:0004707|GO:0005524|GO:0006468
Cpe20g00780 360 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE 13 16 358 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe02g01279 Cpe-Chr2:11421450 Cpe20g00780 Cpe-Chr20:6989381 7.33E-169 dispersed
Cpe12g00387 Cpe-Chr12:2759463 Cpe20g00780 Cpe-Chr20:6989381 0 dispersed
Cpe13g00136 Cpe-Chr13:984706 Cpe20g00780 Cpe-Chr20:6989381 0 dispersed
Cpe17g00371 Cpe-Chr17:2686582 Cpe20g00780 Cpe-Chr20:6989381 1.63E-160 dispersed
Cpe20g00780 Cpe-Chr20:6989381 Cpe11g00217 Cpe-Chr11:1168178 8.42E-145 dispersed
Cpe20g00780 Cpe-Chr20:6989381 Cpe05g00357 Cpe-Chr5:1990847 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
63094 PF00069 Pkinase 1.10E-68 CL0016 Cpe PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe20g00780 K04371 - csv:101218403 695.656