Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cpe20g00813 | ATGGATTTCTCCTCTCTTCCACTCTTTTTAGATCCTCCTCCCAATTGCCTTCAGCCATCAAATCATGTTGGTGGCGGTGGAGTTAGCTCGATTCGACGCGGTTCCATGGCCGACCGAGCTCGGTTGGCTAACGTACCTCTACCGGAGATGGCCCTCAAGTGTCCTAGATGTGATTCAACCAACACCAAATTTTGTTACTTCAATAACTATAGTCTCTCTCAACCGCGCCATTTCTGTAAGGCTTGTCGCCGATATTGGACTCGTGGTGGTGCTCTTCGGAACGTCCCGGTTGGAGGCGGTTGTCGTCGGAATAAGAAGATTAAAACTCGACGCTCGAAGTCTCCGGTAGCTCGGAATGAAACTCAGCTGAATGTTATTGGTGATTTACAGCCTCAAAATCCTCCCCTTTCATTCATGGCTTCATTCAACAATTTTCCTCAGTATGGAACAATGAATTTAGGGTTGAATTTCAATGATATTGGAAACGATGCTCTTCAGAATCATCAATGGCGCAGTGTCATGAACTTTCCTGTCTCAGGTGGCTTAGAAACCCCATCGGGATGGTACCCAACAAATTCAAGCCTAATACCAAATTCAAGAGCGACCCAGTTGCCTTTAGGGAAGATTGAAGATAACCCAAGTGCTGAATTTGGTGAAATCCTCAAATTTGGGTATCAATAA | 681 | 45.52 | MDFSSLPLFLDPPPNCLQPSNHVGGGGVSSIRRGSMADRARLANVPLPEMALKCPRCDSTNTKFCYFNNYSLSQPRHFCKACRRYWTRGGALRNVPVGGGCRRNKKIKTRRSKSPVARNETQLNVIGDLQPQNPPLSFMASFNNFPQYGTMNLGLNFNDIGNDALQNHQWRSVMNFPVSGGLETPSGWYPTNSSLIPNSRATQLPLGKIEDNPSAEFGEILKFGYQ | 226 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 20 | 7378828 | 7380372 | - | Cp4.1LG20g08500.1 | Cpe20g00813 | 487442 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cpe20g00813 | 226 | Pfam | Dof domain, zinc finger | 51 | 106 | IPR003851 | GO:0003677|GO:0006355 | |
| Cpe20g00813 | 226 | ProSiteProfiles | Zinc finger Dof-type profile. | 52 | 106 | IPR003851 | GO:0003677|GO:0006355 | |
| Cpe20g00813 | 226 | PANTHER | DOF DOMAIN ZINC FINGER PROTEIN | 21 | 185 | - | - | |
| Cpe20g00813 | 226 | ProSitePatterns | Zinc finger Dof-type signature. | 54 | 90 | IPR003851 | GO:0003677|GO:0006355 | |
| Cpe20g00813 | 226 | PANTHER | DOF ZINC FINGER PROTEIN DOF1.4-RELATED | 21 | 185 | IPR045174 | GO:0003700|GO:0006355 |
Event-related genes
| Select | Gene_1 | Gene_2 | Event_name |
|---|---|---|---|
| Cpe05g00913 | Cpe20g00813 | CST |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cpe10g00881 | Cpe-Chr10:4961166 | Cpe20g00813 | Cpe-Chr20:7378828 | 9.84E-46 | dispersed | |
| Cpe13g00850 | Cpe-Chr13:7470504 | Cpe20g00813 | Cpe-Chr20:7378828 | 5.23E-52 | dispersed | |
| Cpe20g00241 | Cpe-Chr20:1369484 | Cpe20g00813 | Cpe-Chr20:7378828 | 1.22E-33 | dispersed | |
| Cpe01g01095 | Cpe-Chr1:6475077 | Cpe20g00813 | Cpe-Chr20:7378828 | 2.90E-52 | wgd | |
| Cpe01g00186 | Cpe-Chr1:1055284 | Cpe20g00813 | Cpe-Chr20:7378828 | 1.66E-49 | wgd | |
| Cpe16g00602 | Cpe-Chr16:6669904 | Cpe20g00813 | Cpe-Chr20:7378828 | 2.40E-46 | wgd | |
| Cpe19g00362 | Cpe-Chr19:3293086 | Cpe20g00813 | Cpe-Chr20:7378828 | 3.91E-31 | wgd | |
| Cpe02g01240 | Cpe-Chr2:11148513 | Cpe20g00813 | Cpe-Chr20:7378828 | 4.16E-103 | wgd | |
| Cpe20g00813 | Cpe-Chr20:7378828 | Cpe03g00124 | Cpe-Chr3:627920 | 2.51E-49 | wgd | |
| Cpe20g00813 | Cpe-Chr20:7378828 | Cpe05g00913 | Cpe-Chr5:6006866 | 5.40E-46 | wgd | |
| Cpe20g00813 | Cpe-Chr20:7378828 | Cpe08g01160 | Cpe-Chr8:8615889 | 5.22E-50 | wgd |
Transcription factors information
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| 51161 | PF02701 | zf-Dof | 2.80E-33 | No_clan | Cpe | TF |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cpe20g00813 | - | - | cmax:111469505 | 446.047 |