Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe20g00813 ATGGATTTCTCCTCTCTTCCACTCTTTTTAGATCCTCCTCCCAATTGCCTTCAGCCATCAAATCATGTTGGTGGCGGTGGAGTTAGCTCGATTCGACGCGGTTCCATGGCCGACCGAGCTCGGTTGGCTAACGTACCTCTACCGGAGATGGCCCTCAAGTGTCCTAGATGTGATTCAACCAACACCAAATTTTGTTACTTCAATAACTATAGTCTCTCTCAACCGCGCCATTTCTGTAAGGCTTGTCGCCGATATTGGACTCGTGGTGGTGCTCTTCGGAACGTCCCGGTTGGAGGCGGTTGTCGTCGGAATAAGAAGATTAAAACTCGACGCTCGAAGTCTCCGGTAGCTCGGAATGAAACTCAGCTGAATGTTATTGGTGATTTACAGCCTCAAAATCCTCCCCTTTCATTCATGGCTTCATTCAACAATTTTCCTCAGTATGGAACAATGAATTTAGGGTTGAATTTCAATGATATTGGAAACGATGCTCTTCAGAATCATCAATGGCGCAGTGTCATGAACTTTCCTGTCTCAGGTGGCTTAGAAACCCCATCGGGATGGTACCCAACAAATTCAAGCCTAATACCAAATTCAAGAGCGACCCAGTTGCCTTTAGGGAAGATTGAAGATAACCCAAGTGCTGAATTTGGTGAAATCCTCAAATTTGGGTATCAATAA 681 45.52 MDFSSLPLFLDPPPNCLQPSNHVGGGGVSSIRRGSMADRARLANVPLPEMALKCPRCDSTNTKFCYFNNYSLSQPRHFCKACRRYWTRGGALRNVPVGGGCRRNKKIKTRRSKSPVARNETQLNVIGDLQPQNPPLSFMASFNNFPQYGTMNLGLNFNDIGNDALQNHQWRSVMNFPVSGGLETPSGWYPTNSSLIPNSRATQLPLGKIEDNPSAEFGEILKFGYQ 226
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
20 7378828 7380372 - Cp4.1LG20g08500.1 Cpe20g00813 487442

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe20g00813 226 Pfam Dof domain, zinc finger 51 106 IPR003851 GO:0003677|GO:0006355
Cpe20g00813 226 ProSiteProfiles Zinc finger Dof-type profile. 52 106 IPR003851 GO:0003677|GO:0006355
Cpe20g00813 226 PANTHER DOF DOMAIN ZINC FINGER PROTEIN 21 185 - -
Cpe20g00813 226 ProSitePatterns Zinc finger Dof-type signature. 54 90 IPR003851 GO:0003677|GO:0006355
Cpe20g00813 226 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 21 185 IPR045174 GO:0003700|GO:0006355
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe20g00813 - - - cmax:111469505 446.047
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cpe05g00913 Cpe20g00813 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe10g00881 Cpe-Chr10:4961166 Cpe20g00813 Cpe-Chr20:7378828 9.84E-46 dispersed
Cpe13g00850 Cpe-Chr13:7470504 Cpe20g00813 Cpe-Chr20:7378828 5.23E-52 dispersed
Cpe20g00241 Cpe-Chr20:1369484 Cpe20g00813 Cpe-Chr20:7378828 1.22E-33 dispersed
Cpe01g01095 Cpe-Chr1:6475077 Cpe20g00813 Cpe-Chr20:7378828 2.90E-52 wgd
Cpe01g00186 Cpe-Chr1:1055284 Cpe20g00813 Cpe-Chr20:7378828 1.66E-49 wgd
Cpe16g00602 Cpe-Chr16:6669904 Cpe20g00813 Cpe-Chr20:7378828 2.40E-46 wgd
Cpe19g00362 Cpe-Chr19:3293086 Cpe20g00813 Cpe-Chr20:7378828 3.91E-31 wgd
Cpe02g01240 Cpe-Chr2:11148513 Cpe20g00813 Cpe-Chr20:7378828 4.16E-103 wgd
Cpe20g00813 Cpe-Chr20:7378828 Cpe03g00124 Cpe-Chr3:627920 2.51E-49 wgd
Cpe20g00813 Cpe-Chr20:7378828 Cpe05g00913 Cpe-Chr5:6006866 5.40E-46 wgd
Cpe20g00813 Cpe-Chr20:7378828 Cpe08g01160 Cpe-Chr8:8615889 5.22E-50 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi6g427 . Blo03g01238 . . . Bpe08g01366 Bma14g00500 Bma07g01538 Cmo13g00132 . Cma01g00595 Cma13g00133 Car01g00540 Car13g00103 Sed08g2509 Cpe05g00913 Cpe20g00813 Bhi08g00258 Tan01g2611 Cmetu12g0765 . Hepe10g1082 . . Cla02g01976 Cam02g2096 Cec02g2134 Cco02g2164 Clacu02g2084 Cmu02g2021 Cre02g2330 Cone1ag0649 Cone5ag1158 . . Lsi02g01364 Csa06g01499 Chy11g01243 Cme11g01283 . . . Bda09g00153 . . . . Sed01g0886 . Cmo20g00451 Cma02g00812 . Car02g00587 . . . Bhi10g00686 Tan05g0376 Cmetu11g2570 . Hepe10g1221 . . Cla03g00153 Cam03g0159 Cec03g0158 Cco03g0165 Clacu03g0162 Cmu03g0779 Cre03g0474 . Csa01g02399 Chy12g00184 Cme12g00200
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cpe20g00461 CCT,CST 16 169 C2C2-Dof Transcription Factor Family AT1G29160 57.2 3.2e-45 178.7
Cpe19g01067 CCT,CST 11 160 C2C2-Dof Transcription Factor Family AT1G29160 53.3 2.6e-39 159.1
Cpe10g00145 CCT,CST 21 158 C2C2-Dof Transcription Factor Family AT1G29160 54.9 1.1e-37 153.7
Cpe20g00461 CCT,CST 16 169 C2C2-Dof Transcription Factor Family AT2G34140 56.2 1.8e-45 179.5
Cpe19g01067 CCT,CST 11 160 C2C2-Dof Transcription Factor Family AT2G34140 50.9 8.1e-38 154.1
Cpe01g02293 . 1 138 C2C2-Dof Transcription Factor Family AT2G37590 67.4 8.9e-41 164.9
Cpe08g01160 CCT,CST,ECH 1 126 C2C2-Dof Transcription Factor Family AT2G37590 68.8 3.2e-38 156.4
Cpe02g01240 . 57 131 C2C2-Dof Transcription Factor Family AT2G37590 89.3 4.6e-37 152.5
Cpe13g00850 . 1 125 C2C2-Dof Transcription Factor Family AT2G37590 59.6 1.7e-36 150.6
Cpe20g00813 CST 30 104 C2C2-Dof Transcription Factor Family AT2G37590 89.3 1.7e-36 150.6
Cpe04g01497 CCT,CST,ECH 143 489 C2C2-Dof Transcription Factor Family AT3G47500 52.4 1.2e-83 307.8
Cpe08g01160 CCT,CST,ECH 1 126 C2C2-Dof Transcription Factor Family AT5G02460 66.7 5.9e-39 159.1
Cpe20g00813 CST 23 104 C2C2-Dof Transcription Factor Family AT5G02460 86.6 3.8e-38 156.4
Cpe02g01240 . 1 131 C2C2-Dof Transcription Factor Family AT5G02460 61.2 8.5e-38 155.2
Cpe10g00881 CCT,CST,ECH 43 116 C2C2-Dof Transcription Factor Family AT5G02460 86.5 2.1e-36 150.6
Cpe01g02293 . 1 138 C2C2-Dof Transcription Factor Family AT5G02460 63.9 2.7e-36 150.2
Cpe13g00850 . 1 125 C2C2-Dof Transcription Factor Family AT5G02460 59.9 2.7e-36 150.2
Cpe10g00881 CCT,CST,ECH 19 128 C2C2-Dof Transcription Factor Family AT3G55370 65.5 1.1e-36 151.4
Cpe04g01443 CCT,CST 26 313 C2C2-Dof Transcription Factor Family AT5G60850 52.3 1.4e-48 190.7
Cpe18g00719 CCT 26 318 C2C2-Dof Transcription Factor Family AT5G60850 53.7 2.0e-47 186.8
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005685 2 1 2 2 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 0 3 1 0 38
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
51161 PF02701 zf-Dof 2.80E-33 No_clan Cpe TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe20g00813 Cpe_Chr20 FPKM 0.238377 0.148929 0.791574 0.560512 0.319092 0.564544 0.156972 1.486429 1.82918 1.403484