Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe20g00814 ATGGAGGAAGAAAACGGCGCTCTGATTCAGAGCCTGATTGATGTAGTGAACGAGATTGCTTGGATCTCGGATTTTAGGCATACTGTCAAGAAGCAGTACTGCAATTTGTCCAGGAGATTGAAGCTTTTGATCCCAATGTTCGAAGAGATTAGGGATAGCAAAGAGCCAGTCCCCGAGGATACTCTCAAGGCTCTCGTATTGTTGAAAGAAGCTCTCGAATCGGCTAAGAAGTTGCTCAGATTTGGAAGCGAGGGGAGCAAGATTTTCCTGGCCATAGAGAGGGAGCAAATTATGAACAAATTTCATGAGGTAACCGCTCGGTTGGAACAAGCTTTGGAAGGAATAGCCTACGATAAACTTGATATATCCGATGAAGTTAAAGAGCAGGTCGAGCTTGTTCTTGCTCAGTTCAGAAGAGCCAAAGGCAGGGCCGATGTTCCTGACTCTGAGTTATTGGATGATATCTCTGCCCTTTATAACACGAACAATGATTCTTCTATAGATCAAGATCGGCTGAGGAGACTGTCCGAAAAATTACAGTTATTAGGAATATCCGATCTTGCACAAGAGTCAATAGCTTTGCATGAGATGGTTACTGCTACTGATGGAGATCCAGGTCAAAGCATTGAGAAGATGGCAGGGCTGCTGAAGAAAATAAAAGATTTCGTGCAATCGGAGAACCTTGAAATGGACGATCCTGGTAGAGAAAAGAATTCTCCAGCAAGTTGTAGTGGACAAATATCCAATGAGAAAAATAACAAGGCCCCAATTATACCAGATGATTTTCGCTGCCCCATATCCCTGGAGTTGATGAGAGATCCTGTCATTGTCTCAACTGGACAGACCTATGAACGTTCCTGCATTGAGAAGTGGCTTGAATCCGGGCATGGGACATGTCCGAAGACACAACAGAAACTTTCAAGCACTACTCTTACACCAAATTATGTGTTGCGTAGCCTTATAGCCCAGTGGTACAATCGCGTTGCTATAGCTGAGGCTGGTGCAATACCTCTCCTTGTCGGCCTTCTTTCAACTCCCGACTCCCGTGTTCAAGAGCATGCTGTGACAGCACTTCTTAACCTCTCTATATGTGAGGACAACAAGGGAAGCATCATTTCCTCTGGGGCAGTTCCTGGTATTGTTCTCGTTCTCAAGAAGGGGAGCATGGAAGCTCGGGAGAATGCTGCAGCCACTCTTTTCAGCCTTTCAGTGGTGGATGAAAATAAAGTTCGAATCGGTGCCTCCGGAGCTATCCCGCCGCTCGTCACGCTGCTCAGTGAAGGCACACAAAGAGGTAAGAAAGATGCTGCAACTGCTCTTTTCAACTTGTGCATCTACCAAGGAAACAAGGGAAAGGCAGTAAGAGCTGGCGTTGTTCCAACCTTGATGCAGCTTCTCACTGAACCTGGAACAGGAATGGTGGATGAAGCCTTAGCCATCTTAGCAATACTCGCCAGCCATTCCGAAGGGAAAGCTGCCATCGGATCTGCAAAGGCGGTACCGGTTTTGGTCGATGTTATCGGTACAGGATCACCGAGGAACAGAGAGAATGCAGCTGCAGTTCTCGTGCACCTTTGCTCAGGAGACGAGCAACACCTAGTAGAGGCCAGAGATCTTGGAGTGATAAGTTCATTGATAGATTTGGCACGCAATGGCACTGACAGAGGAAAGCGAAAAGCTGCTCAGTTGCTTGAGCGAATGAACCGACTCTTCGAGCACGCAGCGCACCCGGAGGAGATTCGAGTGCTTCGGTTGCAAGCACCGGAGTCTCGACCTCAAAACCAAGCATCACAATCAACCTCCACCACGGAAGTCGTCGGTAGCTGA 1827 47.45 MEEENGALIQSLIDVVNEIAWISDFRHTVKKQYCNLSRRLKLLIPMFEEIRDSKEPVPEDTLKALVLLKEALESAKKLLRFGSEGSKIFLAIEREQIMNKFHEVTARLEQALEGIAYDKLDISDEVKEQVELVLAQFRRAKGRADVPDSELLDDISALYNTNNDSSIDQDRLRRLSEKLQLLGISDLAQESIALHEMVTATDGDPGQSIEKMAGLLKKIKDFVQSENLEMDDPGREKNSPASCSGQISNEKNNKAPIIPDDFRCPISLELMRDPVIVSTGQTYERSCIEKWLESGHGTCPKTQQKLSSTTLTPNYVLRSLIAQWYNRVAIAEAGAIPLLVGLLSTPDSRVQEHAVTALLNLSICEDNKGSIISSGAVPGIVLVLKKGSMEARENAAATLFSLSVVDENKVRIGASGAIPPLVTLLSEGTQRGKKDAATALFNLCIYQGNKGKAVRAGVVPTLMQLLTEPGTGMVDEALAILAILASHSEGKAAIGSAKAVPVLVDVIGTGSPRNRENAAAVLVHLCSGDEQHLVEARDLGVISSLIDLARNGTDRGKRKAAQLLERMNRLFEHAAHPEEIRVLRLQAPESRPQNQASQSTSTTEVVGS 608
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
20 7385804 7390278 - Cp4.1LG20g08530.1 Cpe20g00814 487443
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe20g00814 608 SUPERFAMILY ARM repeat 325 567 IPR016024 -
Cpe20g00814 608 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 334 376 IPR000225 GO:0005515
Cpe20g00814 608 CDD RING-Ubox_PUB 262 304 IPR045210 -
Cpe20g00814 608 Pfam Armadillo/beta-catenin-like repeat 406 444 IPR000225 GO:0005515
Cpe20g00814 608 Pfam Armadillo/beta-catenin-like repeat 326 362 IPR000225 GO:0005515
Cpe20g00814 608 Pfam Armadillo/beta-catenin-like repeat 488 527 IPR000225 GO:0005515
Cpe20g00814 608 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 326 584 - -
Cpe20g00814 608 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 6 325 - -
Cpe20g00814 608 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 457 499 IPR000225 GO:0005515
Cpe20g00814 608 MobiDBLite consensus disorder prediction 229 254 - -
Cpe20g00814 608 MobiDBLite consensus disorder prediction 586 608 - -
Cpe20g00814 608 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 241 328 IPR013083 -
Cpe20g00814 608 MobiDBLite consensus disorder prediction 239 253 - -
Cpe20g00814 608 SUPERFAMILY RING/U-box 252 328 - -
Cpe20g00814 608 Pfam U-box domain 258 326 IPR003613 GO:0004842|GO:0016567
Cpe20g00814 608 MobiDBLite consensus disorder prediction 588 608 - -
Cpe20g00814 608 PANTHER U BOX DOMAIN-CONTAINING 326 584 - -
Cpe20g00814 608 SMART Ubox_2 261 324 IPR003613 GO:0004842|GO:0016567
Cpe20g00814 608 Gene3D - 493 580 IPR011989 -
Cpe20g00814 608 Gene3D - 329 492 IPR011989 -
Cpe20g00814 608 ProSiteProfiles U-box domain profile. 257 331 IPR003613 GO:0004842|GO:0016567
Cpe20g00814 608 PANTHER U BOX DOMAIN-CONTAINING 6 325 - -
Cpe20g00814 608 SMART arm_5 529 569 IPR000225 GO:0005515
Cpe20g00814 608 SMART arm_5 323 363 IPR000225 GO:0005515
Cpe20g00814 608 SMART arm_5 405 445 IPR000225 GO:0005515
Cpe20g00814 608 SMART arm_5 446 486 IPR000225 GO:0005515
Cpe20g00814 608 SMART arm_5 364 404 IPR000225 GO:0005515
Cpe20g00814 608 SMART arm_5 487 527 IPR000225 GO:0005515
Cpe20g00814 608 Gene3D - 7 117 IPR036537 GO:0007166
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe02g00462 Cpe-Chr2:2621744 Cpe20g00814 Cpe-Chr20:7385804 2.12E-17 dispersed
Cpe10g00577 Cpe-Chr10:3360182 Cpe20g00814 Cpe-Chr20:7385804 2.57E-09 dispersed
Cpe19g00782 Cpe-Chr19:5923400 Cpe20g00814 Cpe-Chr20:7385804 2.21E-06 dispersed
Cpe20g00814 Cpe-Chr20:7385804 Cpe13g00377 Cpe-Chr13:4077679 4.55E-96 dispersed
Cpe16g00603 Cpe-Chr16:6674165 Cpe20g00814 Cpe-Chr20:7385804 0 wgd
Cpe02g01239 Cpe-Chr2:11139117 Cpe20g00814 Cpe-Chr20:7385804 0 wgd
Cpe20g00814 Cpe-Chr20:7385804 Cpe05g00914 Cpe-Chr5:6010481 1.86E-31 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe20g00814 - - cmo:103504179 694.886