Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe20g00823 ATGGCTAAACCCGCCGTCCTCCTCTGCCTTGTGTCTCTCATCTCAGCAATGTGGACGGCCGCTGCTAGAATTCCCGGCGCCTACTCCGGTGGCCCATGGCAGACCGCTCACGCCACCTTCTACGGCGGCTCCGACGCATCCGGCACAATGGGTGGGGCTTGTGGGTATGGGAATTTGTACAGCCAAGGGTACGGGGTGAACACGGCGGCGCTGAGTACGGCGCTGTTCAACAATGGGCTGAGCTGTGGCGCGTGTTTCGAGATCAAATGTGCGAATGACCCGAGATGGTGCCATTCGGGTAGCCCGTCGATTGTCATAACGGCCACCAACTTCTGCCCGCCCAACTTTGCTCTGCCCAGTGACAATGGCGGCTGGTGTAACCCTCCTCGCCCCCATTTCGATTTGGCCATGCCTATGTTTCTCAAGATCGCTGAATATCGCGCCGGTATCGTCCCCGTCGCCTACCGCCGGCAAGAGAGAAGTGAAGTTGGTTAA 495 58.99 MAKPAVLLCLVSLISAMWTAAARIPGAYSGGPWQTAHATFYGGSDASGTMGGACGYGNLYSQGYGVNTAALSTALFNNGLSCGACFEIKCANDPRWCHSGSPSIVITATNFCPPNFALPSDNGGWCNPPRPHFDLAMPMFLKIAEYRAGIVPVAYRRQERSEVG 164
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
20 7443824 7445270 - Cp4.1LG20g08380.1 Cpe20g00823 487452
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe20g00823 164 PANTHER EXPANSIN-A15 6 158 IPR002963 GO:0009664
Cpe20g00823 164 PRINTS Expansin signature 63 77 IPR002963 GO:0009664
Cpe20g00823 164 PRINTS Expansin signature 90 101 IPR002963 GO:0009664
Cpe20g00823 164 PRINTS Expansin signature 104 114 IPR002963 GO:0009664
Cpe20g00823 164 PRINTS Expansin signature 123 140 IPR002963 GO:0009664
Cpe20g00823 164 PRINTS Expansin signature 140 153 IPR002963 GO:0009664
Cpe20g00823 164 Pfam Lytic transglycolase 68 155 IPR009009 -
Cpe20g00823 164 PRINTS Expansin/Lol pI family signature 50 68 IPR007118 GO:0005576
Cpe20g00823 164 PRINTS Expansin/Lol pI family signature 32 47 IPR007118 GO:0005576
Cpe20g00823 164 PRINTS Expansin/Lol pI family signature 148 164 IPR007118 GO:0005576
Cpe20g00823 164 PRINTS Expansin/Lol pI family signature 72 90 IPR007118 GO:0005576
Cpe20g00823 164 PANTHER EXPANSIN 6 158 - -
Cpe20g00823 164 Gene3D - 19 159 IPR036908 -
Cpe20g00823 164 SUPERFAMILY Barwin-like endoglucanases 9 157 IPR036908 -
Cpe20g00823 164 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 51 164 IPR007112 -
Cpe20g00823 164 SMART dpbb_1 68 155 IPR007112 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cpe05g00925 Cpe20g00823 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe10g00890 Cpe-Chr10:5008797 Cpe20g00823 Cpe-Chr20:7443824 6.91E-94 dispersed
Cpe01g01088 Cpe-Chr1:6418949 Cpe20g00823 Cpe-Chr20:7443824 7.00E-72 wgd
Cpe01g00178 Cpe-Chr1:1002796 Cpe20g00823 Cpe-Chr20:7443824 2.12E-97 wgd
Cpe16g00619 Cpe-Chr16:6736333 Cpe20g00823 Cpe-Chr20:7443824 1.12E-96 wgd
Cpe19g00348 Cpe-Chr19:3058720 Cpe20g00823 Cpe-Chr20:7443824 5.58E-96 wgd
Cpe02g01228 Cpe-Chr2:11088874 Cpe20g00823 Cpe-Chr20:7443824 2.38E-110 wgd
Cpe20g00823 Cpe-Chr20:7443824 Cpe05g00925 Cpe-Chr5:6080077 4.92E-96 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe20g00823 - - csv:101206662 323.553