Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe20g00829 ATGGCTGCTGAGAAGTCTTTTTATGATGTTCTTGGCCAGAAATATCCTCCTTCTCCGACAGGAAATGGCGATTCAGCTCACGATTTCAGCTCAGGTAACTCCTCTGTTCTTGGATTGTCTGAAAATTGTGTTGTGGGTCATGATTCGTTTGTTGGGATGCAATATATTGGGCATTTTAGGCAAGGAGTTGAGGAAGCTAGGCATTTTAGGCAAGGAGTTGAGGAAGCTAGTAAGTTTCTTCCTGTTAATGGAACATTTGGGACAATTGATTTGGATAATGATTTGGGTATGTCTGTTCCTTTTAAGGATGTTGATGTTTCTAGGATTAGTGGGTCGTTGAGAGACAAGAAAAACCGACAGAGGGAGGAGGAGAGTGATGGGGAGCTGAGAAGTAGTAAGCAGTCAGCTACTTTTGCTGATGATAATTCACTGTCTGATTTGTTTGATGAGGTTCTGTTGTGTCGGGGCGAGAGTCGGCGGTCGCCGTGTGGTTCGGATGAATCGTCGGAGACCGAAGTGAATAAGAAGAACTCGAGAGGGCGGAGAAGGAAAGGGAAGAAAACTCGATCTAAGAAGCAAGATAATAGTGTGGGAGTTGTGGATTTGTGGACATTGTTAACACAATGTGCTCAAGCTATTTCGAATTATGATCAAAGAACTGCTAGTGAGCTGTTGAATCAGATCAGGCAGCATTCTAGTCCATCTGGGGATGGAAATCAGAGATTAGCTCATTACTTTGCTAACGGTCTCGAGACTCGGCTTGCGGCCGGGACGCCTCTGTATATGCCCTTTGCAAGTAATGAAACCTCTGCTGCTGAGATTCTGAAAGCGTTTCAGATGTTCATTAAGGCGTGCCCGTTTCGGCGTATGTCGTATTTCTATGCGAATCGAACGATTATGAAGCTAGCTGAGAAAGAAACAACGCTGCATATCATTGATTTTGGTATTCTGTATGGTCTCCAATGGCCTTGTTTGATTCAGCGGCTCTCTCGTCGACCTGGTGGACCTCCCAAGGTTCGAATCACCGGGATCGAGCTTCCCCAGCCGGGGTTTCGCCCTGCTGAACGGGTTGAGCAAACTGGTCGTCGCCTTGCACATTACTGTAAGAGATTCAATGTGCCATTTGAATACAAGGTCTTGGCTCAGAAATGGGAAACGGTTAAATACGAGGATCTTAATGTCAATCGAGACGAACTGACTATCGTGACTTGTTTGTTCCGACTTAAGAACGTACCCGACGAAACCGTGGTTGCGAACAGTCCACGAGACAGGGTTCTGAAGTTGATAAGGAAAATCAACCCAGATCTGTTCATTCATGAAGTGATGAATGGCTCATTCAACACTCCTTTCTTCAACACAAGGTTTAAGGAGGCATTGTTTCATTACTCGTCGTTGTTTGGGCAATCCTTCCCTGATGTTATGGATGCTCTCGAACGCATAATCCACCCCGTTTATTTGTTGCGAACTACCAATCTGAATTCATGA 1485 45.19 MAAEKSFYDVLGQKYPPSPTGNGDSAHDFSSGNSSVLGLSENCVVGHDSFVGMQYIGHFRQGVEEARHFRQGVEEASKFLPVNGTFGTIDLDNDLGMSVPFKDVDVSRISGSLRDKKNRQREEESDGELRSSKQSATFADDNSLSDLFDEVLLCRGESRRSPCGSDESSETEVNKKNSRGRRRKGKKTRSKKQDNSVGVVDLWTLLTQCAQAISNYDQRTASELLNQIRQHSSPSGDGNQRLAHYFANGLETRLAAGTPLYMPFASNETSAAEILKAFQMFIKACPFRRMSYFYANRTIMKLAEKETTLHIIDFGILYGLQWPCLIQRLSRRPGGPPKVRITGIELPQPGFRPAERVEQTGRRLAHYCKRFNVPFEYKVLAQKWETVKYEDLNVNRDELTIVTCLFRLKNVPDETVVANSPRDRVLKLIRKINPDLFIHEVMNGSFNTPFFNTRFKEALFHYSSLFGQSFPDVMDALERIIHPVYLLRTTNLNS 494
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
20 7491328 7493115 + Cp4.1LG20g08470.1 Cpe20g00829 487458
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe20g00829 494 ProSiteProfiles GRAS family profile. 193 494 IPR005202 -
Cpe20g00829 494 Pfam GRAS domain family 204 466 IPR005202 -
Cpe20g00829 494 MobiDBLite consensus disorder prediction 158 193 - -
Cpe20g00829 494 MobiDBLite consensus disorder prediction 158 177 - -
Cpe20g00829 494 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 1 466 IPR005202 -
Cpe20g00829 494 PANTHER SCARECROW-LIKE PROTEIN 30 1 466 - -
Cpe20g00829 494 MobiDBLite consensus disorder prediction 112 130 - -
Cpe20g00829 494 MobiDBLite consensus disorder prediction 112 136 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cpe05g00928 Cpe20g00829 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe20g00829 Cpe-Chr20:7491328 Cpe16g00391 Cpe-Chr16:5492187 5.66E-49 dispersed
Cpe16g00623 Cpe-Chr16:6751531 Cpe20g00829 Cpe-Chr20:7491328 8.61E-122 wgd
Cpe02g01222 Cpe-Chr2:11052449 Cpe20g00829 Cpe-Chr20:7491328 0 wgd
Cpe20g00829 Cpe-Chr20:7491328 Cpe03g00113 Cpe-Chr3:570245 1.48E-129 wgd
Cpe20g00829 Cpe-Chr20:7491328 Cpe05g00928 Cpe-Chr5:6099157 2.80E-121 wgd
Cpe20g00829 Cpe-Chr20:7491328 Cpe08g01167 Cpe-Chr8:8658812 2.41E-138 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
51162 PF03514 GRAS 1.20E-81 CL0063 Cpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe20g00829 - - cpep:111782799 899.042