Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe20g00853 ATGGCTAACCGTATCTCCGGTGGTGCAGAGGAAGTTTCCGCCGTCGTCGCCATAGAAGAGGAAGAAGTTGCGCCGTCTGGTTCCGATGTTCCGACTCCTCAAGAGAGGAAAATGTCGTGGCAAAATCTCCGGCGACACGACTCCTTGTATTTAGAGTCTCGTAAACTCCATGGTCGCGATCACTCCGATGCCGACAAGAAGAAATGGAGTGTGATATTACAACTAGCATTCCAGAGCATCGGAGTAGTGTACGGAGACATCGGAACCTCGCCGCTCTACGTGTACGCCGGCATCTTTCCGGAGGGAATAAAGCACGAGGACGACGTTTTAGGAGCGATGTCTTTGATCTTCTACACCTTAACTCTCATTCCAGTCATCAAATACGTGTTCATCGTCCTCAGAGCCAACGACAACGGCGATGGCGGAACCTTCGCACTGTACTCTCTCATTTGTCGGTACGCGAAATTAGGGCTGATTCCGAACGCAGAGATGGAGGATGGAGAGGTGTCCAATTACCAATTGAATTTGCCGAATCGAAGACAGAAGAGAGCTTCGAGGATTCAGTCGGCGCTGGAGAACAGCCATTTTGCGAAGGTCTCTCTTCTCTTTGCGACGATGCTCGGAACCGCCATGGTTATCGGCGACGGCGTCCTCACCCCTTGTATCTCAGTTTTATCTGCTGTGGGAGGGATCACGGAGGCAACCCCTGCAATGACAGAAGGAAGGATTGTTTGGGCATCAGTAGTCATCTTGGTGTTGCTGTTCATGGCTCAAAGATTAGGAACCGACAAAGTGGGCTACACTTTTGCCCCAATCATCTTCATTTGGTTTGCTTTCATTGCTGCAATCGGTGTTTACAACTTTTTCAAATACGACCCAACTGTGATCAAGGCCTTAAATCCAGCCTACATTATTTATTATTTCCAGAGGAACAAAAAGGATGCTTGGATTTCTCTCGGCGGCGTTGTTCTTTGCATTACAGGGACGGAAGCATTGTTCGCCGACGTCGGGCATTTCAGCGTCCGATCGATCCAGCTGAGCATGTCCCTAGTGACCTACCCATCTCTAATATGCGCTTATGCAGGCCAATCTTCGTTTCTTCGCAAGCATAGTGATCTAGTTTCACACACATTCTACAAGTCCACTCCTGGAAGTTTGTATTGGCCAATGTTTGTGGTGGCAGTTTTAGCATCAATCATAGCAAGCCAAGCCATGATCTCAGGAACTTTTTCTATAATTCAGCAGTCACTTTCACTTGGATGCTTCCCAAGAGTTAAAGTGGTTCATACTTCTGCTAAGCATGAAGGCCAAGTTTATGTTCCTGAGATCAATTACCTTCTCATGTTGGCTTGTGTTTGTATTACTTTGGTTTTCAAGAACACTACAAAGATCGGCAATGCATACGGAATAGCAGTGGTGTTTGTGATGACACTCACGTCCTCCTTCCTAGTATTGATAATGGTAATGATATGGAAAACTCACATCCTGTTGGTAATCACTTACGTTGTCATAATTGGGAGCGTGGAATTGGTGTATCTAAGTTCAGTTCTTTACAAGTTCGACCAAGGAGGGTATCTCCCTCTGGCTTTTGCAGCTGTTTTGATGACAGTAATGTATGTGTGGAATAGTGTGTTTAGAAAGAAGTACTTTTACGAGCTCAACCACAAAATCTCTCCGGAAATGTTCAATGAAATGGTGAGTACCACCAGCTTTAGAAGACTTCCTGGCATGGCATTTTTCTACACTGAGCTCGTTCAAGGCATCCCTCCCATCATCAAGCATTACGTCGAGCACGTGCCCGCTTTGCAGTCTGTGCTTGTCTTTGTCACCATTAAATCGCTTCCTGTTAGCAAGGTTCCAGCCGACGAACGTTTCCTCTTCCGAAGAGTAGAGGCAAAGGAGATCGACGTGTTTCGTTGTGTAGTTCGATATGGATACACAGAAGTGCGTGCCGAACATGAACTGTTCGAGAAAATTTTACTCGAAAGATTGGAAAAGTTACAGTCTGTGCTCGTCTTTGTCACCATTAAATCGCTTCCTGTCAGCAAGGTTCCAGCCGACGAACGTTTCCTCTTCCGACGAGTAGAGGCAAAGGAGATCGATGTGTTTCGTTGTGTAGTTCGATATGGATACACAGAAGTGCGCGCCGAACATGAACTGTTCGAGAAGATTTTACTCAAAAGATTGGAAGAGTTCGAAAGTGATCGACAGCCATTGTGTAACTGCGATGGGAGAGTTGAAGAAGTTGAAGAGGATGGGAATGAATTTGGAGGCGTTGCAGAAGCATGGAAGCAAGGAGTTGTTCATTTCATTGGGGAAACAGAGGTGGTTGCTAAACCGAGTGCGGGGTTTGGAGATAGAATTATGATAAATTATGCATATAGCTTCTTGAGGAGAAATTTGAGGGAAACTGATCAAGTTTTTGAAATTCCTCACAAACGTATGCTTAAAGTGGGAATGACTTATGAACTTTAG 2475 45.74 MANRISGGAEEVSAVVAIEEEEVAPSGSDVPTPQERKMSWQNLRRHDSLYLESRKLHGRDHSDADKKKWSVILQLAFQSIGVVYGDIGTSPLYVYAGIFPEGIKHEDDVLGAMSLIFYTLTLIPVIKYVFIVLRANDNGDGGTFALYSLICRYAKLGLIPNAEMEDGEVSNYQLNLPNRRQKRASRIQSALENSHFAKVSLLFATMLGTAMVIGDGVLTPCISVLSAVGGITEATPAMTEGRIVWASVVILVLLFMAQRLGTDKVGYTFAPIIFIWFAFIAAIGVYNFFKYDPTVIKALNPAYIIYYFQRNKKDAWISLGGVVLCITGTEALFADVGHFSVRSIQLSMSLVTYPSLICAYAGQSSFLRKHSDLVSHTFYKSTPGSLYWPMFVVAVLASIIASQAMISGTFSIIQQSLSLGCFPRVKVVHTSAKHEGQVYVPEINYLLMLACVCITLVFKNTTKIGNAYGIAVVFVMTLTSSFLVLIMVMIWKTHILLVITYVVIIGSVELVYLSSVLYKFDQGGYLPLAFAAVLMTVMYVWNSVFRKKYFYELNHKISPEMFNEMVSTTSFRRLPGMAFFYTELVQGIPPIIKHYVEHVPALQSVLVFVTIKSLPVSKVPADERFLFRRVEAKEIDVFRCVVRYGYTEVRAEHELFEKILLERLEKLQSVLVFVTIKSLPVSKVPADERFLFRRVEAKEIDVFRCVVRYGYTEVRAEHELFEKILLKRLEEFESDRQPLCNCDGRVEEVEEDGNEFGGVAEAWKQGVVHFIGETEVVAKPSAGFGDRIMINYAYSFLRRNLRETDQVFEIPHKRMLKVGMTYEL 824
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
20 7677981 7681379 - Cp4.1LG20g08170.1 Cpe20g00853 487482
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe20g00853 824 PANTHER OSMOTIC STRESS POTASSIUM TRANSPORTER 667 822 IPR003855 GO:0015079|GO:0016020|GO:0071805
Cpe20g00853 824 PANTHER POTASSIUM TRANSPORTER 667 822 - -
Cpe20g00853 824 TIGRFAM kup: potassium uptake protein 75 666 IPR003855 GO:0015079|GO:0016020|GO:0071805
Cpe20g00853 824 Pfam K+ potassium transporter 76 648 IPR003855 GO:0015079|GO:0016020|GO:0071805
Cpe20g00853 824 PANTHER OSMOTIC STRESS POTASSIUM TRANSPORTER 29 666 IPR003855 GO:0015079|GO:0016020|GO:0071805
Cpe20g00853 824 PANTHER POTASSIUM TRANSPORTER 29 666 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe03g00771 Cpe-Chr3:4768095 Cpe20g00853 Cpe-Chr20:7677981 0 dispersed
Cpe03g01169 Cpe-Chr3:9565110 Cpe20g00853 Cpe-Chr20:7677981 0 dispersed
Cpe17g00800 Cpe-Chr17:6259490 Cpe20g00853 Cpe-Chr20:7677981 1.78E-50 dispersed
Cpe20g00853 Cpe-Chr20:7677981 Cpe03g00553 Cpe-Chr3:3247870 0 dispersed
Cpe20g00853 Cpe-Chr20:7677981 Cpe03g00769 Cpe-Chr3:4753652 0 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe20g00853 K03549 - csv:101215797 1139.41