Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe20g00858 ATGCCACCCGCGTGTTTAACAGATAAGACTCAACTCTCAAGCTTTCCTCGATCAAAGATGGCGTCAGTTCATGCTACCATAACACCAGCTGTTGGTAAGAGTGGGAACCATTCTTACCCTACGAAATCACTAAATACTGCCTTCTTGCCTGGGTTTGACGTGGTTGGACGTGTTTCTGGTGCATGCAAGGACTCATACCCTTCATCTATTACCTTAACTCCTAGAGCCACTTTAACCTCTGAACCCATGGAAACCAGTACAGTGAAAGCCAAAAACAATAAACATACAGTTGATCCTTCATCTCCTGACTTTCTGCCGCTTCCTTCATTTGAACAATGTTTCCCAAAAAGCACAAAAGAACACAAATACACACAGATGTATTATGCCAAGCAAGGAATCATTACTGAGGAAATGTTGTTTTGTGCCACTCGTGAGAAGCTGGATCCGGAGTTTGTGAGGTCAGAGGTTGCTCGCGGGCGGGCAATCATCCCTTCCAACAAGAAACATTTGGAGTTGGAGCCCATGATTGTGGGTAGAAAATTCTTGGTGAAAGTAAATGCAAATATTGGAAACTCTGCTGTTGCAAGTTCTATTGAAGAAGAAGTTTATAAAGTCCAATGGGCGACCATGTGGGGAGCTGATACTGTCATGGACCTCTCTACCGGTCGTCACATACATGAAACTCGTGAGTGGATATTGCGTAACTCAGCCGTACCAGTAGGAACCGTTCCCATATATCAGGCACTTGAAAAAGTGAATGGAATAGCTGAAAACCTCACGTGGGAGATTTTCAGGGAAACACTGATTGAACAAGCTGAGCAGGGTGTAGACTATTTTACTATTCATGCCGGGGTCTTACTTCGATACATCCCTCTAACAGCAAAAAGAATGACAGGAATTGTATCACGTGGTGGATCTATTCATGCAAAGTGGTGTTTGGCCCATCATAAAGAAAACTTTGCTTACGAACACTGGGACGACATACTTGACATCTGTAATCAGTACGATATATCTCTATCGATTGGTGACGGGCTGAGACCTGGTTCAATTTATGATGCCAACGACACTGCTCAATTTGCAGAGCTCTTAACTCAGGGCGAACTGACTCTTGTTCACGAAGAAACTGGGCATGTGCTCAAAGTACCCTTTCGTCGGGTTCATCTATCTGGTGATGAACCAAACTTTGACAATTATGACACTAGTGGTCCTCAAAACATCAGCCCCCGTACTGGATTGCCTAAACTTCGGAAGGACTGGGTTGATAGGAGGGACAAATTAGGTGCACCAAGATACACACAGATGTATTATGCCAAGCAAGGAATCATTACTGAGGAAATGTTGTTTTGTGCCACTCGTGAGAAGCTGGATCCGGAGTTTGTGAGGTCAGAGGTTGCTCGCGGGCGGGCAATCATCCCTTCCAACAAGAAACATTTGGAGTTGGAGCCCATGATTGTGGGTAGAAAATTCTTGGTGAAAGTAAATGCAAATATTGGAAACTCTGCTGTTGCAAGTTCTATTGAAGAAGAAGTTTATAAAGTCCAATGGGCGACCATGTGGGGAGCTGATACTGTCATGGACCTCTCTACCGGTCGTCACATACATGAAACTCGTGAGTGGATATTGCGTAACTCAGCCGTACCAGTAGGAACCGTTCCCATATATCAGGCACTTGAAAAAGTGAATGGAATAGCTGAAAACCTCACGTGGGAGATTTTCAGGGAAACACTGATTGAACAAGCTGAGCAGGGTGTAGACTATTTTACTATTCATGCCGGGGTCTTACTTCGATACATCCCTCTAACAGCAAAAAGAATGACAGGAATTGTATCACGTGGTGGATCTATTCATGCAAAGTGGTGTTTGGCCCATCATAAAGAAAACTTTGCTTACGAACACTGGGACGACATACTTGACATCTGTAATCAGTACGATATATCTCTATCGATTGGTGACGGGCTGAGACCTGGTTCAATTTATGATGCCAACGACACTGCTCAATTTGCAGAGCTCTTAACTCAGGGCGAACTGACTCGTAGAGCATGGGAAAAAGATGTGCAGGTAATGAATGAAGGACCTGGACACGTTCCGATGCATAAGATCCCTGAAAACATGCAAAAACAGCTCGAGTGGTGTAATGAAGCTCCGTTCTACACTCTTGGTCCTTTAACTACGGATGTAGCTCCTGGCTATGACCATATTACCTCTGCCATTGGTGCTGCCAATATTGGGGCTCTTGGCACGGCTCTTCTCTGTTATGTTACACCGAAAGAGCACCTAGGATTGCCAAATCGTGATGACGTGAAGGCTGGAGTAATAGCATATAAGATAGCTGCTCATGCAGCTGATCTAGCCAAAGGTCACCCACATGCTCAATCATGGGATGATGCATTGAGCAAGGCGAGATTCGAGTTCCGATGGATGGATCAATTTGCTTTGTCATTGGACCCTATGACTGCCATGTCCTTCCATGATGAAACCTTGCCATCAGAAGGTGCCAAGGTGGCTCACTTCTGTTCCATGTGTGGACCTAAGTTCTGCTCCATGAAGATAACCGAGGATGTGCGGAAGTATGCTGAAGAACACGGGTACGGGAGCGCAGAGGAAGCTCTGAAGCAAGGGATGGATGCTATGAGTGCTGAGTTCTTGGCTGCAAAGAAAACCGTTAGTGGTGAACAACATGGTGAAACTGGTGGAGAAATCTACTTGCCTGCAAGCTACATGGACTCCCTGAAGAGGAACAACGCCTCTACGCTGCTCGTGACTATTGTTTTGGTCGACGATCCATCGAGCATACATTCATATTGGCCTTCACTTAACCTGATCAAAACCCTCACCGGTCCAAGAGTATGGCCGGTCATCGGCAGTCTACCGGCTCTTTTCTCGAACCGGCAGAAACTCCATGACTGGATGGCCGGAAACCTCCGCGACACAGGCGCCGCTGCCACGTACCAAACCTGCACGGTGGCGGTTCCATTCATAGCTAAAAAGCAAGGATTTTACACTGTCACGTGCCACCCGAGAAACATCGAGCACGTGCTTCGAACCCGGTTCGAAAATTACCCTAAAGGACCGGACTGGCAGGCGGCTTTTCACGATTTACTGGGACAGGGGATTTTCAACAGCGACGGCGAAATTTGGCTGATTCAGCGGAAAACGGCGGCGCTGGAGTTCACGACGAGGACGCTCCGACAGGCGATGGATCGGTGGGTTAATCGGACGATAAGGACGCGACTGTGGTGCATTTTGGACAAGGCGGCGGAGTATAAGACGGCGGTGGATTTGCAGGATTTGTTGCTCCGGTTGACTTTTGATAATATTTGTGGGCTGACTTTTGGTAAAGATCCTGAAACTCTGTCGCCGGAATTGCCTACAAACTCCTTCGCTTTGGCCTTTGACACCGCCACTGAGGCCACTCTCCAGCGCCTTCTTTACCCTGGTCTTATATGGAGGTTCGAGAAGCTTCTAGGGATTGGAATGGAAAGAAGGTTGAAGACGTGTCTGAAAGTGCTCACCGGTCCAAGAGTATGGCCGGTCATCGGCAGTCTACCGGCTCTTTTCTCGAACCGGCAGAAACTCCATGACTGGATGGCCGGAAACCTCCGCGACACAGGCGCCGCTGCCACGTACCAAACCTGCACGGTGGCGGTTCCATTCATAGCTAAAAAGCAAGGATTTTACACTGTCACGTGCCACCCGAGAAACATCGAGCACGTGCTTCGAACCCGGTTCGAAAATTACCCTAAAGGACCGGACTGGCAGGCGGCTTTTCACGATTTACTGGGACAGGGGATTTTCAACAGCGACGGCGAAATTTGGCTGATTCAGCGGAAAACGGCGGCGCTGGAGTTCACGACGAGGACGCTCCGACAGGCGATGGATCGGTGGGTTAATCGGACGATAAGGACGCGACTGTGGTGCATTTTGGACAAGGCGGCGGAGTATAAGACGGCGGTGGATTTGCAGGATTTGTTGCTCCGGTTGACTTTTGATAATATTTGTGGGCTGACTTTTGGTAAAGATCCTGAAACTCTGTCGCCGGAATTGCCTACAAACTCCTTCGCTTTGGCCTTTGACACCGCCACTGAGGCCACTCTCCAGCGCCTTCTTTACCCTGGTCTTATATGGAGGTTCGAGAAGCTTCTAGGGATTGGAATGGAAAGAAGGTTGAAGACGTGTCTGAAAGTGGTAGAAGAATACATAAACGACGCCGTTGCAGCCCGTAAAGAATCTCCCTCAGACGACTTATTATCACGCTTCATGAAGAAGCGCGACGACGACCGCTTCTCCGCCACCGTGCTCCACCGCATCGCATTAAACTTCGTCCTCGCCGGTCGGGACACCTCCTCCGTCGCCCTCACCTGGTTCTTTTGGCTCGTAATGAACCACCCACACGTAGAGGAAAAAATCCTCACCGAAATCTCAACGGTCCTCCGTCAAACACGTGGCGACGATACGCGCCGTTGGATCGAAGAGCCGTTGGTGTTCGACGAGGCCGACAAATTGGTGTACTTAAAAGCCGCGTTGGCTGAAACGCTTCGTTTATACCCGTCCGTACCACAGGATTTCAAGTATGTCGTGGCTGATGACGTGTTGCCAGATGGCACTTTTGTGCCCGCCGGTTCGACTGTGACGTATTCAATTTATTCGGTCGGGAGAATGAAGAGCATTTGGGGGGAGGATTGTGAGGAATTTAAACCGGACCGGTGGTTATCGCCGGCCGGAGACCGGTTCGAGGGGCAGAAGGATGTGTATAAGTTTGTGGCGTTTAATGCTGGACCGAGGACTTGTTTGGGGAAGGATTTGGCTTATTTGCAGATGAAGTCCGTCGCCTCTGCCGTACTCCTCCGGTACCGGCTGGCGCCAGTTCCCGGTCACCGGGTGGAACAAAAGATGTCTCTCACTCTTTTTATGAAGAATGGGCTTCGTGTTTATTTGCATCCCCGCCGGCTCGTCTAG 4956 48.77 MPPACLTDKTQLSSFPRSKMASVHATITPAVGKSGNHSYPTKSLNTAFLPGFDVVGRVSGACKDSYPSSITLTPRATLTSEPMETSTVKAKNNKHTVDPSSPDFLPLPSFEQCFPKSTKEHKYTQMYYAKQGIITEEMLFCATREKLDPEFVRSEVARGRAIIPSNKKHLELEPMIVGRKFLVKVNANIGNSAVASSIEEEVYKVQWATMWGADTVMDLSTGRHIHETREWILRNSAVPVGTVPIYQALEKVNGIAENLTWEIFRETLIEQAEQGVDYFTIHAGVLLRYIPLTAKRMTGIVSRGGSIHAKWCLAHHKENFAYEHWDDILDICNQYDISLSIGDGLRPGSIYDANDTAQFAELLTQGELTLVHEETGHVLKVPFRRVHLSGDEPNFDNYDTSGPQNISPRTGLPKLRKDWVDRRDKLGAPRYTQMYYAKQGIITEEMLFCATREKLDPEFVRSEVARGRAIIPSNKKHLELEPMIVGRKFLVKVNANIGNSAVASSIEEEVYKVQWATMWGADTVMDLSTGRHIHETREWILRNSAVPVGTVPIYQALEKVNGIAENLTWEIFRETLIEQAEQGVDYFTIHAGVLLRYIPLTAKRMTGIVSRGGSIHAKWCLAHHKENFAYEHWDDILDICNQYDISLSIGDGLRPGSIYDANDTAQFAELLTQGELTRRAWEKDVQVMNEGPGHVPMHKIPENMQKQLEWCNEAPFYTLGPLTTDVAPGYDHITSAIGAANIGALGTALLCYVTPKEHLGLPNRDDVKAGVIAYKIAAHAADLAKGHPHAQSWDDALSKARFEFRWMDQFALSLDPMTAMSFHDETLPSEGAKVAHFCSMCGPKFCSMKITEDVRKYAEEHGYGSAEEALKQGMDAMSAEFLAAKKTVSGEQHGETGGEIYLPASYMDSLKRNNASTLLVTIVLVDDPSSIHSYWPSLNLIKTLTGPRVWPVIGSLPALFSNRQKLHDWMAGNLRDTGAAATYQTCTVAVPFIAKKQGFYTVTCHPRNIEHVLRTRFENYPKGPDWQAAFHDLLGQGIFNSDGEIWLIQRKTAALEFTTRTLRQAMDRWVNRTIRTRLWCILDKAAEYKTAVDLQDLLLRLTFDNICGLTFGKDPETLSPELPTNSFALAFDTATEATLQRLLYPGLIWRFEKLLGIGMERRLKTCLKVLTGPRVWPVIGSLPALFSNRQKLHDWMAGNLRDTGAAATYQTCTVAVPFIAKKQGFYTVTCHPRNIEHVLRTRFENYPKGPDWQAAFHDLLGQGIFNSDGEIWLIQRKTAALEFTTRTLRQAMDRWVNRTIRTRLWCILDKAAEYKTAVDLQDLLLRLTFDNICGLTFGKDPETLSPELPTNSFALAFDTATEATLQRLLYPGLIWRFEKLLGIGMERRLKTCLKVVEEYINDAVAARKESPSDDLLSRFMKKRDDDRFSATVLHRIALNFVLAGRDTSSVALTWFFWLVMNHPHVEEKILTEISTVLRQTRGDDTRRWIEEPLVFDEADKLVYLKAALAETLRLYPSVPQDFKYVVADDVLPDGTFVPAGSTVTYSIYSVGRMKSIWGEDCEEFKPDRWLSPAGDRFEGQKDVYKFVAFNAGPRTCLGKDLAYLQMKSVASAVLLRYRLAPVPGHRVEQKMSLTLFMKNGLRVYLHPRRLV 1651
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
20 7734937 7746179 + Cp4.1LG20g08110.1 Cpe20g00858 487487
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe20g00858 1651 Pfam Cytochrome P450 1001 1122 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cpe20g00858 1651 Pfam Cytochrome P450 1227 1638 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cpe20g00858 1651 PANTHER THIAMINE BIOSYNTHESIS PROTEIN THIC 20 121 IPR002817 GO:0009228|GO:0051536
Cpe20g00858 1651 PANTHER THIAMINE BIOSYNTHESIS PROTEIN THIC 370 912 IPR002817 GO:0009228|GO:0051536
Cpe20g00858 1651 TIGRFAM thiC: phosphomethylpyrimidine synthase 432 855 IPR002817 GO:0009228|GO:0051536
Cpe20g00858 1651 SFLD phosphomethylpyrimidine synthase (ThiC) 430 886 - -
Cpe20g00858 1651 SFLD Radical SAM Phosphomethylpyrimidine Synthase 430 888 - -
Cpe20g00858 1651 Gene3D Cytochrome P450 941 1167 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cpe20g00858 1651 MobiDBLite consensus disorder prediction 81 101 - -
Cpe20g00858 1651 Hamap Phosphomethylpyrimidine synthase [thiC]. 431 857 IPR037509 GO:0009228|GO:0016830
Cpe20g00858 1651 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 1589 1598 IPR017972 GO:0005506|GO:0016705
Cpe20g00858 1651 SFLD phosphomethylpyrimidine synthase (ThiC) 432 852 IPR002817 GO:0009228|GO:0051536
Cpe20g00858 1651 Pfam Radical SAM ThiC family 432 852 IPR002817 GO:0009228|GO:0051536
Cpe20g00858 1651 Pfam Radical SAM ThiC family 124 374 IPR002817 GO:0009228|GO:0051536
Cpe20g00858 1651 PANTHER - 122 369 - -
Cpe20g00858 1651 SUPERFAMILY Cytochrome P450 941 1168 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cpe20g00858 1651 Gene3D Cytochrome P450 1168 1648 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cpe20g00858 1651 Gene3D - 792 824 - -
Cpe20g00858 1651 PANTHER THIAMINE BIOSYNTHESIS PROTEIN THIC 122 369 IPR002817 GO:0009228|GO:0051536
Cpe20g00858 1651 Gene3D Radical SAM ThiC family, central domain 166 381 IPR038521 -
Cpe20g00858 1651 Gene3D Radical SAM ThiC family, central domain 474 788 IPR038521 -
Cpe20g00858 1651 PRINTS P450 superfamily signature 1596 1607 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cpe20g00858 1651 PRINTS P450 superfamily signature 1443 1460 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cpe20g00858 1651 PRINTS P450 superfamily signature 1506 1517 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cpe20g00858 1651 PRINTS P450 superfamily signature 1587 1596 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cpe20g00858 1651 MobiDBLite consensus disorder prediction 81 99 - -
Cpe20g00858 1651 PANTHER - 20 121 - -
Cpe20g00858 1651 SUPERFAMILY Cytochrome P450 1167 1648 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cpe20g00858 1651 PRINTS E-class P450 group I signature 1452 1478 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cpe20g00858 1651 PRINTS E-class P450 group I signature 1432 1449 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cpe20g00858 1651 PRINTS E-class P450 group I signature 1586 1596 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cpe20g00858 1651 PRINTS E-class P450 group I signature 1596 1619 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cpe20g00858 1651 PRINTS E-class P450 group I signature 1505 1523 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cpe20g00858 1651 PANTHER - 370 912 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cpe02g01172 Cpe20g00858 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe12g00374 Cpe-Chr12:2678868 Cpe20g00858 Cpe-Chr20:7734937 1.28E-91 dispersed
Cpe12g00850 Cpe-Chr12:7512786 Cpe20g00858 Cpe-Chr20:7734937 5.05E-46 dispersed
Cpe13g00150 Cpe-Chr13:1093759 Cpe20g00858 Cpe-Chr20:7734937 1.37E-100 dispersed
Cpe20g00858 Cpe-Chr20:7734937 Cpe08g01337 Cpe-Chr8:9644553 1.39E-41 dispersed
Cpe02g01173 Cpe-Chr2:10671096 Cpe20g00858 Cpe-Chr20:7734937 2.24E-140 transposed
Cpe02g01172 Cpe-Chr2:10664374 Cpe20g00858 Cpe-Chr20:7734937 6.84E-45 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe20g00858 K03147 - csv:101213554 1099.73