Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cpe20g00858 | ATGCCACCCGCGTGTTTAACAGATAAGACTCAACTCTCAAGCTTTCCTCGATCAAAGATGGCGTCAGTTCATGCTACCATAACACCAGCTGTTGGTAAGAGTGGGAACCATTCTTACCCTACGAAATCACTAAATACTGCCTTCTTGCCTGGGTTTGACGTGGTTGGACGTGTTTCTGGTGCATGCAAGGACTCATACCCTTCATCTATTACCTTAACTCCTAGAGCCACTTTAACCTCTGAACCCATGGAAACCAGTACAGTGAAAGCCAAAAACAATAAACATACAGTTGATCCTTCATCTCCTGACTTTCTGCCGCTTCCTTCATTTGAACAATGTTTCCCAAAAAGCACAAAAGAACACAAATACACACAGATGTATTATGCCAAGCAAGGAATCATTACTGAGGAAATGTTGTTTTGTGCCACTCGTGAGAAGCTGGATCCGGAGTTTGTGAGGTCAGAGGTTGCTCGCGGGCGGGCAATCATCCCTTCCAACAAGAAACATTTGGAGTTGGAGCCCATGATTGTGGGTAGAAAATTCTTGGTGAAAGTAAATGCAAATATTGGAAACTCTGCTGTTGCAAGTTCTATTGAAGAAGAAGTTTATAAAGTCCAATGGGCGACCATGTGGGGAGCTGATACTGTCATGGACCTCTCTACCGGTCGTCACATACATGAAACTCGTGAGTGGATATTGCGTAACTCAGCCGTACCAGTAGGAACCGTTCCCATATATCAGGCACTTGAAAAAGTGAATGGAATAGCTGAAAACCTCACGTGGGAGATTTTCAGGGAAACACTGATTGAACAAGCTGAGCAGGGTGTAGACTATTTTACTATTCATGCCGGGGTCTTACTTCGATACATCCCTCTAACAGCAAAAAGAATGACAGGAATTGTATCACGTGGTGGATCTATTCATGCAAAGTGGTGTTTGGCCCATCATAAAGAAAACTTTGCTTACGAACACTGGGACGACATACTTGACATCTGTAATCAGTACGATATATCTCTATCGATTGGTGACGGGCTGAGACCTGGTTCAATTTATGATGCCAACGACACTGCTCAATTTGCAGAGCTCTTAACTCAGGGCGAACTGACTCTTGTTCACGAAGAAACTGGGCATGTGCTCAAAGTACCCTTTCGTCGGGTTCATCTATCTGGTGATGAACCAAACTTTGACAATTATGACACTAGTGGTCCTCAAAACATCAGCCCCCGTACTGGATTGCCTAAACTTCGGAAGGACTGGGTTGATAGGAGGGACAAATTAGGTGCACCAAGATACACACAGATGTATTATGCCAAGCAAGGAATCATTACTGAGGAAATGTTGTTTTGTGCCACTCGTGAGAAGCTGGATCCGGAGTTTGTGAGGTCAGAGGTTGCTCGCGGGCGGGCAATCATCCCTTCCAACAAGAAACATTTGGAGTTGGAGCCCATGATTGTGGGTAGAAAATTCTTGGTGAAAGTAAATGCAAATATTGGAAACTCTGCTGTTGCAAGTTCTATTGAAGAAGAAGTTTATAAAGTCCAATGGGCGACCATGTGGGGAGCTGATACTGTCATGGACCTCTCTACCGGTCGTCACATACATGAAACTCGTGAGTGGATATTGCGTAACTCAGCCGTACCAGTAGGAACCGTTCCCATATATCAGGCACTTGAAAAAGTGAATGGAATAGCTGAAAACCTCACGTGGGAGATTTTCAGGGAAACACTGATTGAACAAGCTGAGCAGGGTGTAGACTATTTTACTATTCATGCCGGGGTCTTACTTCGATACATCCCTCTAACAGCAAAAAGAATGACAGGAATTGTATCACGTGGTGGATCTATTCATGCAAAGTGGTGTTTGGCCCATCATAAAGAAAACTTTGCTTACGAACACTGGGACGACATACTTGACATCTGTAATCAGTACGATATATCTCTATCGATTGGTGACGGGCTGAGACCTGGTTCAATTTATGATGCCAACGACACTGCTCAATTTGCAGAGCTCTTAACTCAGGGCGAACTGACTCGTAGAGCATGGGAAAAAGATGTGCAGGTAATGAATGAAGGACCTGGACACGTTCCGATGCATAAGATCCCTGAAAACATGCAAAAACAGCTCGAGTGGTGTAATGAAGCTCCGTTCTACACTCTTGGTCCTTTAACTACGGATGTAGCTCCTGGCTATGACCATATTACCTCTGCCATTGGTGCTGCCAATATTGGGGCTCTTGGCACGGCTCTTCTCTGTTATGTTACACCGAAAGAGCACCTAGGATTGCCAAATCGTGATGACGTGAAGGCTGGAGTAATAGCATATAAGATAGCTGCTCATGCAGCTGATCTAGCCAAAGGTCACCCACATGCTCAATCATGGGATGATGCATTGAGCAAGGCGAGATTCGAGTTCCGATGGATGGATCAATTTGCTTTGTCATTGGACCCTATGACTGCCATGTCCTTCCATGATGAAACCTTGCCATCAGAAGGTGCCAAGGTGGCTCACTTCTGTTCCATGTGTGGACCTAAGTTCTGCTCCATGAAGATAACCGAGGATGTGCGGAAGTATGCTGAAGAACACGGGTACGGGAGCGCAGAGGAAGCTCTGAAGCAAGGGATGGATGCTATGAGTGCTGAGTTCTTGGCTGCAAAGAAAACCGTTAGTGGTGAACAACATGGTGAAACTGGTGGAGAAATCTACTTGCCTGCAAGCTACATGGACTCCCTGAAGAGGAACAACGCCTCTACGCTGCTCGTGACTATTGTTTTGGTCGACGATCCATCGAGCATACATTCATATTGGCCTTCACTTAACCTGATCAAAACCCTCACCGGTCCAAGAGTATGGCCGGTCATCGGCAGTCTACCGGCTCTTTTCTCGAACCGGCAGAAACTCCATGACTGGATGGCCGGAAACCTCCGCGACACAGGCGCCGCTGCCACGTACCAAACCTGCACGGTGGCGGTTCCATTCATAGCTAAAAAGCAAGGATTTTACACTGTCACGTGCCACCCGAGAAACATCGAGCACGTGCTTCGAACCCGGTTCGAAAATTACCCTAAAGGACCGGACTGGCAGGCGGCTTTTCACGATTTACTGGGACAGGGGATTTTCAACAGCGACGGCGAAATTTGGCTGATTCAGCGGAAAACGGCGGCGCTGGAGTTCACGACGAGGACGCTCCGACAGGCGATGGATCGGTGGGTTAATCGGACGATAAGGACGCGACTGTGGTGCATTTTGGACAAGGCGGCGGAGTATAAGACGGCGGTGGATTTGCAGGATTTGTTGCTCCGGTTGACTTTTGATAATATTTGTGGGCTGACTTTTGGTAAAGATCCTGAAACTCTGTCGCCGGAATTGCCTACAAACTCCTTCGCTTTGGCCTTTGACACCGCCACTGAGGCCACTCTCCAGCGCCTTCTTTACCCTGGTCTTATATGGAGGTTCGAGAAGCTTCTAGGGATTGGAATGGAAAGAAGGTTGAAGACGTGTCTGAAAGTGCTCACCGGTCCAAGAGTATGGCCGGTCATCGGCAGTCTACCGGCTCTTTTCTCGAACCGGCAGAAACTCCATGACTGGATGGCCGGAAACCTCCGCGACACAGGCGCCGCTGCCACGTACCAAACCTGCACGGTGGCGGTTCCATTCATAGCTAAAAAGCAAGGATTTTACACTGTCACGTGCCACCCGAGAAACATCGAGCACGTGCTTCGAACCCGGTTCGAAAATTACCCTAAAGGACCGGACTGGCAGGCGGCTTTTCACGATTTACTGGGACAGGGGATTTTCAACAGCGACGGCGAAATTTGGCTGATTCAGCGGAAAACGGCGGCGCTGGAGTTCACGACGAGGACGCTCCGACAGGCGATGGATCGGTGGGTTAATCGGACGATAAGGACGCGACTGTGGTGCATTTTGGACAAGGCGGCGGAGTATAAGACGGCGGTGGATTTGCAGGATTTGTTGCTCCGGTTGACTTTTGATAATATTTGTGGGCTGACTTTTGGTAAAGATCCTGAAACTCTGTCGCCGGAATTGCCTACAAACTCCTTCGCTTTGGCCTTTGACACCGCCACTGAGGCCACTCTCCAGCGCCTTCTTTACCCTGGTCTTATATGGAGGTTCGAGAAGCTTCTAGGGATTGGAATGGAAAGAAGGTTGAAGACGTGTCTGAAAGTGGTAGAAGAATACATAAACGACGCCGTTGCAGCCCGTAAAGAATCTCCCTCAGACGACTTATTATCACGCTTCATGAAGAAGCGCGACGACGACCGCTTCTCCGCCACCGTGCTCCACCGCATCGCATTAAACTTCGTCCTCGCCGGTCGGGACACCTCCTCCGTCGCCCTCACCTGGTTCTTTTGGCTCGTAATGAACCACCCACACGTAGAGGAAAAAATCCTCACCGAAATCTCAACGGTCCTCCGTCAAACACGTGGCGACGATACGCGCCGTTGGATCGAAGAGCCGTTGGTGTTCGACGAGGCCGACAAATTGGTGTACTTAAAAGCCGCGTTGGCTGAAACGCTTCGTTTATACCCGTCCGTACCACAGGATTTCAAGTATGTCGTGGCTGATGACGTGTTGCCAGATGGCACTTTTGTGCCCGCCGGTTCGACTGTGACGTATTCAATTTATTCGGTCGGGAGAATGAAGAGCATTTGGGGGGAGGATTGTGAGGAATTTAAACCGGACCGGTGGTTATCGCCGGCCGGAGACCGGTTCGAGGGGCAGAAGGATGTGTATAAGTTTGTGGCGTTTAATGCTGGACCGAGGACTTGTTTGGGGAAGGATTTGGCTTATTTGCAGATGAAGTCCGTCGCCTCTGCCGTACTCCTCCGGTACCGGCTGGCGCCAGTTCCCGGTCACCGGGTGGAACAAAAGATGTCTCTCACTCTTTTTATGAAGAATGGGCTTCGTGTTTATTTGCATCCCCGCCGGCTCGTCTAG | 4956 | 48.77 | MPPACLTDKTQLSSFPRSKMASVHATITPAVGKSGNHSYPTKSLNTAFLPGFDVVGRVSGACKDSYPSSITLTPRATLTSEPMETSTVKAKNNKHTVDPSSPDFLPLPSFEQCFPKSTKEHKYTQMYYAKQGIITEEMLFCATREKLDPEFVRSEVARGRAIIPSNKKHLELEPMIVGRKFLVKVNANIGNSAVASSIEEEVYKVQWATMWGADTVMDLSTGRHIHETREWILRNSAVPVGTVPIYQALEKVNGIAENLTWEIFRETLIEQAEQGVDYFTIHAGVLLRYIPLTAKRMTGIVSRGGSIHAKWCLAHHKENFAYEHWDDILDICNQYDISLSIGDGLRPGSIYDANDTAQFAELLTQGELTLVHEETGHVLKVPFRRVHLSGDEPNFDNYDTSGPQNISPRTGLPKLRKDWVDRRDKLGAPRYTQMYYAKQGIITEEMLFCATREKLDPEFVRSEVARGRAIIPSNKKHLELEPMIVGRKFLVKVNANIGNSAVASSIEEEVYKVQWATMWGADTVMDLSTGRHIHETREWILRNSAVPVGTVPIYQALEKVNGIAENLTWEIFRETLIEQAEQGVDYFTIHAGVLLRYIPLTAKRMTGIVSRGGSIHAKWCLAHHKENFAYEHWDDILDICNQYDISLSIGDGLRPGSIYDANDTAQFAELLTQGELTRRAWEKDVQVMNEGPGHVPMHKIPENMQKQLEWCNEAPFYTLGPLTTDVAPGYDHITSAIGAANIGALGTALLCYVTPKEHLGLPNRDDVKAGVIAYKIAAHAADLAKGHPHAQSWDDALSKARFEFRWMDQFALSLDPMTAMSFHDETLPSEGAKVAHFCSMCGPKFCSMKITEDVRKYAEEHGYGSAEEALKQGMDAMSAEFLAAKKTVSGEQHGETGGEIYLPASYMDSLKRNNASTLLVTIVLVDDPSSIHSYWPSLNLIKTLTGPRVWPVIGSLPALFSNRQKLHDWMAGNLRDTGAAATYQTCTVAVPFIAKKQGFYTVTCHPRNIEHVLRTRFENYPKGPDWQAAFHDLLGQGIFNSDGEIWLIQRKTAALEFTTRTLRQAMDRWVNRTIRTRLWCILDKAAEYKTAVDLQDLLLRLTFDNICGLTFGKDPETLSPELPTNSFALAFDTATEATLQRLLYPGLIWRFEKLLGIGMERRLKTCLKVLTGPRVWPVIGSLPALFSNRQKLHDWMAGNLRDTGAAATYQTCTVAVPFIAKKQGFYTVTCHPRNIEHVLRTRFENYPKGPDWQAAFHDLLGQGIFNSDGEIWLIQRKTAALEFTTRTLRQAMDRWVNRTIRTRLWCILDKAAEYKTAVDLQDLLLRLTFDNICGLTFGKDPETLSPELPTNSFALAFDTATEATLQRLLYPGLIWRFEKLLGIGMERRLKTCLKVVEEYINDAVAARKESPSDDLLSRFMKKRDDDRFSATVLHRIALNFVLAGRDTSSVALTWFFWLVMNHPHVEEKILTEISTVLRQTRGDDTRRWIEEPLVFDEADKLVYLKAALAETLRLYPSVPQDFKYVVADDVLPDGTFVPAGSTVTYSIYSVGRMKSIWGEDCEEFKPDRWLSPAGDRFEGQKDVYKFVAFNAGPRTCLGKDLAYLQMKSVASAVLLRYRLAPVPGHRVEQKMSLTLFMKNGLRVYLHPRRLV | 1651 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
20 | 7734937 | 7746179 | + | Cp4.1LG20g08110.1 | Cpe20g00858 | 487487 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cpe20g00858 | 1651 | Pfam | Cytochrome P450 | 1001 | 1122 | IPR001128 | GO:0004497|GO:0005506|GO:0016705|GO:0020037 | |
Cpe20g00858 | 1651 | Pfam | Cytochrome P450 | 1227 | 1638 | IPR001128 | GO:0004497|GO:0005506|GO:0016705|GO:0020037 | |
Cpe20g00858 | 1651 | PANTHER | THIAMINE BIOSYNTHESIS PROTEIN THIC | 20 | 121 | IPR002817 | GO:0009228|GO:0051536 | |
Cpe20g00858 | 1651 | PANTHER | THIAMINE BIOSYNTHESIS PROTEIN THIC | 370 | 912 | IPR002817 | GO:0009228|GO:0051536 | |
Cpe20g00858 | 1651 | TIGRFAM | thiC: phosphomethylpyrimidine synthase | 432 | 855 | IPR002817 | GO:0009228|GO:0051536 | |
Cpe20g00858 | 1651 | SFLD | phosphomethylpyrimidine synthase (ThiC) | 430 | 886 | - | - | |
Cpe20g00858 | 1651 | SFLD | Radical SAM Phosphomethylpyrimidine Synthase | 430 | 888 | - | - | |
Cpe20g00858 | 1651 | Gene3D | Cytochrome P450 | 941 | 1167 | IPR036396 | GO:0004497|GO:0005506|GO:0016705|GO:0020037 | |
Cpe20g00858 | 1651 | MobiDBLite | consensus disorder prediction | 81 | 101 | - | - | |
Cpe20g00858 | 1651 | Hamap | Phosphomethylpyrimidine synthase [thiC]. | 431 | 857 | IPR037509 | GO:0009228|GO:0016830 | |
Cpe20g00858 | 1651 | ProSitePatterns | Cytochrome P450 cysteine heme-iron ligand signature. | 1589 | 1598 | IPR017972 | GO:0005506|GO:0016705 | |
Cpe20g00858 | 1651 | SFLD | phosphomethylpyrimidine synthase (ThiC) | 432 | 852 | IPR002817 | GO:0009228|GO:0051536 | |
Cpe20g00858 | 1651 | Pfam | Radical SAM ThiC family | 432 | 852 | IPR002817 | GO:0009228|GO:0051536 | |
Cpe20g00858 | 1651 | Pfam | Radical SAM ThiC family | 124 | 374 | IPR002817 | GO:0009228|GO:0051536 | |
Cpe20g00858 | 1651 | PANTHER | - | 122 | 369 | - | - | |
Cpe20g00858 | 1651 | SUPERFAMILY | Cytochrome P450 | 941 | 1168 | IPR036396 | GO:0004497|GO:0005506|GO:0016705|GO:0020037 | |
Cpe20g00858 | 1651 | Gene3D | Cytochrome P450 | 1168 | 1648 | IPR036396 | GO:0004497|GO:0005506|GO:0016705|GO:0020037 | |
Cpe20g00858 | 1651 | Gene3D | - | 792 | 824 | - | - | |
Cpe20g00858 | 1651 | PANTHER | THIAMINE BIOSYNTHESIS PROTEIN THIC | 122 | 369 | IPR002817 | GO:0009228|GO:0051536 | |
Cpe20g00858 | 1651 | Gene3D | Radical SAM ThiC family, central domain | 166 | 381 | IPR038521 | - | |
Cpe20g00858 | 1651 | Gene3D | Radical SAM ThiC family, central domain | 474 | 788 | IPR038521 | - | |
Cpe20g00858 | 1651 | PRINTS | P450 superfamily signature | 1596 | 1607 | IPR001128 | GO:0004497|GO:0005506|GO:0016705|GO:0020037 | |
Cpe20g00858 | 1651 | PRINTS | P450 superfamily signature | 1443 | 1460 | IPR001128 | GO:0004497|GO:0005506|GO:0016705|GO:0020037 | |
Cpe20g00858 | 1651 | PRINTS | P450 superfamily signature | 1506 | 1517 | IPR001128 | GO:0004497|GO:0005506|GO:0016705|GO:0020037 | |
Cpe20g00858 | 1651 | PRINTS | P450 superfamily signature | 1587 | 1596 | IPR001128 | GO:0004497|GO:0005506|GO:0016705|GO:0020037 | |
Cpe20g00858 | 1651 | MobiDBLite | consensus disorder prediction | 81 | 99 | - | - | |
Cpe20g00858 | 1651 | PANTHER | - | 20 | 121 | - | - | |
Cpe20g00858 | 1651 | SUPERFAMILY | Cytochrome P450 | 1167 | 1648 | IPR036396 | GO:0004497|GO:0005506|GO:0016705|GO:0020037 | |
Cpe20g00858 | 1651 | PRINTS | E-class P450 group I signature | 1452 | 1478 | IPR002401 | GO:0004497|GO:0005506|GO:0016705|GO:0020037 | |
Cpe20g00858 | 1651 | PRINTS | E-class P450 group I signature | 1432 | 1449 | IPR002401 | GO:0004497|GO:0005506|GO:0016705|GO:0020037 | |
Cpe20g00858 | 1651 | PRINTS | E-class P450 group I signature | 1586 | 1596 | IPR002401 | GO:0004497|GO:0005506|GO:0016705|GO:0020037 | |
Cpe20g00858 | 1651 | PRINTS | E-class P450 group I signature | 1596 | 1619 | IPR002401 | GO:0004497|GO:0005506|GO:0016705|GO:0020037 | |
Cpe20g00858 | 1651 | PRINTS | E-class P450 group I signature | 1505 | 1523 | IPR002401 | GO:0004497|GO:0005506|GO:0016705|GO:0020037 | |
Cpe20g00858 | 1651 | PANTHER | - | 370 | 912 | - | - |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Cpe02g01172 | Cpe20g00858 | CCT |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cpe12g00374 | Cpe-Chr12:2678868 | Cpe20g00858 | Cpe-Chr20:7734937 | 1.28E-91 | dispersed | |
Cpe12g00850 | Cpe-Chr12:7512786 | Cpe20g00858 | Cpe-Chr20:7734937 | 5.05E-46 | dispersed | |
Cpe13g00150 | Cpe-Chr13:1093759 | Cpe20g00858 | Cpe-Chr20:7734937 | 1.37E-100 | dispersed | |
Cpe20g00858 | Cpe-Chr20:7734937 | Cpe08g01337 | Cpe-Chr8:9644553 | 1.39E-41 | dispersed | |
Cpe02g01173 | Cpe-Chr2:10671096 | Cpe20g00858 | Cpe-Chr20:7734937 | 2.24E-140 | transposed | |
Cpe02g01172 | Cpe-Chr2:10664374 | Cpe20g00858 | Cpe-Chr20:7734937 | 6.84E-45 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cpe20g00858 | K03147 | - | csv:101213554 | 1099.73 |