Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cpe20g00865 | ATGGGAAAGCTTTCGTTCAAGGATTCGCTTAAAGCGCTTGAAACCGATGTTCAGTATGCCAATACTCTTGCTTTAGACTGTCCAAGAGAGAGTGATGGGGCTTGTGTTCAAATGAGATTATCATACAGCCCTGCTGCTCCCTTTTTTCTTTTTCTTGTTCAATGGACTGATTGTTACCTTGCTGGTGCATTGGGACTGTTAAGAATCCTTATCTATGTGACTTATCCAGATGGAAAGACCACCATGGCCATTTATGAGCGTAAAGCTAGCATTAGAGAATTTTATGTGGTAATCTTCCCTTCTCTTCTGCAACTTCAAAGGGGCATCACAGAATTGGAAGATAGAAAACAAAAAGAGGTCTGCAATGCCAGATACAAAAGAAGGGATGAATTTGGAAGGGGGAAACTTTCAGAAATCGACATAGAAAGAGAAAAGGAGTGTGGAATTTGCATGGAGATTAACACCATGGTTGTCTTGCCCAACTGCAACCATTCTTTGTGCTTGATGTGTTATCGAGACTGGCGCAATCGTTCTCAGTCGTGTCCGTTCTGTCGGGATAGCCTCAAGAGAGTCAACTCCGGCGACCTCTGGATCTTCACAGATAAGAGTGAAATGATTGATCTAACTTCGATTTTGCAGGACAACCGCAAGAGACTATTTGCATACATTGAGAAGCTGCCATTGGTTGTTCCTGATCCAGTGTTTCTTCCTCTTGATTCTCATATTAGGTGA | 732 | 42.49 | MGKLSFKDSLKALETDVQYANTLALDCPRESDGACVQMRLSYSPAAPFFLFLVQWTDCYLAGALGLLRILIYVTYPDGKTTMAIYERKASIREFYVVIFPSLLQLQRGITELEDRKQKEVCNARYKRRDEFGRGKLSEIDIEREKECGICMEINTMVVLPNCNHSLCLMCYRDWRNRSQSCPFCRDSLKRVNSGDLWIFTDKSEMIDLTSILQDNRKRLFAYIEKLPLVVPDPVFLPLDSHIR | 243 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 20 | 7788057 | 7790257 | - | Cp4.1LG20g08050.1 | Cpe20g00865 | 487494 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cpe20g00865 | 243 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 111 | 194 | IPR013083 | - | |
| Cpe20g00865 | 243 | ProSitePatterns | Zinc finger RING-type signature. | 162 | 171 | IPR017907 | - | |
| Cpe20g00865 | 243 | PANTHER | RING FINGER PROTEIN 41, 151 | 1 | 243 | - | - | |
| Cpe20g00865 | 243 | SUPERFAMILY | RING/U-box | 135 | 190 | - | - | |
| Cpe20g00865 | 243 | Pfam | Zinc finger, C3HC4 type (RING finger) | 144 | 190 | - | - | |
| Cpe20g00865 | 243 | ProSiteProfiles | Zinc finger RING-type profile. | 147 | 185 | IPR001841 | - | |
| Cpe20g00865 | 243 | SMART | ring_2 | 147 | 184 | IPR001841 | - | |
| Cpe20g00865 | 243 | PANTHER | RING/U-BOX SUPERFAMILY PROTEIN | 1 | 243 | - | - |
Event-related genes
| Select | Gene_1 | Gene_2 | Event_name |
|---|---|---|---|
| Cpe02g01189 | Cpe20g00865 | CCT | |
| Cpe02g01189 | Cpe20g00865 | ECH |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cpe10g00844 | Cpe-Chr10:4772541 | Cpe20g00865 | Cpe-Chr20:7788057 | 6.95E-109 | dispersed | |
| Cpe19g01012 | Cpe-Chr19:7064031 | Cpe20g00865 | Cpe-Chr20:7788057 | 3.53E-125 | dispersed | |
| Cpe20g00865 | Cpe-Chr20:7788057 | Cpe04g01109 | Cpe-Chr4:9621667 | 5.37E-08 | dispersed | |
| Cpe02g01176 | Cpe-Chr2:10696056 | Cpe20g00865 | Cpe-Chr20:7788057 | 1.46E-167 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cpe20g00865 | - | - | csv:101203772 | 462.996 |