Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cpe20g00876 | ATGTCGGTCTCCGTCGCGGTGTCCAACTCGCCGGGATTTTCCCCTTCCTCCTCGATGTTCTGCAACAAGCCGTCGATTATTTCTCCGGCGCCGGAGGCGCTGACACTCACTTTGGCTCATTTGAATTCCTCGTCTTGCTCTTCTTCGCCTTCTTCGCCTTCTTCCCCTTTTCGGATTCGGTTTCCGAAGCCCCCTTCTGGGCTTTCCGCAGCGGCGGTGGCGGTGGCGGTGGCTTCCACCTCTTCTCCTTCATCGGCGTCGTCCGGCGCGATATTGAAAAGAAAAAGACCGGCGAGGTTGGATATTCCGTTGATGCCGTTGAGTTTTGCGGCTCCGGTGATGCCGTCGCCGTCGTCGTTCAGGGAGGTCGTGGAGGCAGAGAGAGATGGGTACTCTGTGTATTGCAAGAGAGGGAGGCGGAGAGTTTCCATGGAAGATCGGTGTTCCGCCGTCGTTGATCTTCGAGGAAATTCCAAAGAGGCGTTTTTTGGTGTTTTTGATGGACATGGCGGCGCAAAAGCTGCAGAATTTGCAGCAAATAACTTAGAGAAGAACATTTTGAATGAAATTGAAACAATGGCTGATAACGACACTGATTTTGAAGAAGCCATTAAACATGGCTACCTCACCACAGATTCTGAGTTCCTCAAGGAGGATCAACGCGGTGGCTCATGTTGTGTGACAGCCCTGATCAAGAAAGGCAACCTCGTCGTCTCCAACATCGGTGACTGTCGTGCTGTTCTCAGCAGCCACGGCATTGCCGAGGCTATCACGTCGGACCACCGCCCGTCCCGGGAAGACGAGAGGCAGCGGATCGAGTCCACGGGTGGATATGTTGATATGTGCAATAATGGGGTTTGGAGAGTGCAGGGGTCTCTGGCTGTCACAAGAGGAATTGGGGATGCTCACCTCAAACGATGGGTGAGCAATCAAGAAGCAGTGGAGATTGCACATCCATTGTGTGTAGGGATTGAGAAGGCGCAGCCATTGGTGGCGTGTAAAAAGCTTGTGGAGCTATCTATTTCAAGGGGCTCAGTTGATGACATTAGTGTAGTACTCATTCAATTGCCTAACTTCATCTAA | 1083 | 52.26 | MSVSVAVSNSPGFSPSSSMFCNKPSIISPAPEALTLTLAHLNSSSCSSSPSSPSSPFRIRFPKPPSGLSAAAVAVAVASTSSPSSASSGAILKRKRPARLDIPLMPLSFAAPVMPSPSSFREVVEAERDGYSVYCKRGRRRVSMEDRCSAVVDLRGNSKEAFFGVFDGHGGAKAAEFAANNLEKNILNEIETMADNDTDFEEAIKHGYLTTDSEFLKEDQRGGSCCVTALIKKGNLVVSNIGDCRAVLSSHGIAEAITSDHRPSREDERQRIESTGGYVDMCNNGVWRVQGSLAVTRGIGDAHLKRWVSNQEAVEIAHPLCVGIEKAQPLVACKKLVELSISRGSVDDISVVLIQLPNFI | 360 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
20 | 7869092 | 7870907 | + | Cp4.1LG20g07940.1 | Cpe20g00876 | 487505 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cpe20g00876 | 360 | Pfam | Protein phosphatase 2C | 135 | 313 | IPR001932 | - | |
Cpe20g00876 | 360 | CDD | PP2Cc | 130 | 356 | IPR001932 | - | |
Cpe20g00876 | 360 | ProSiteProfiles | PPM-type phosphatase domain profile. | 130 | 356 | IPR001932 | - | |
Cpe20g00876 | 360 | PANTHER | PROTEIN PHOSPHATASE 2C FAMILY PROTEIN-RELATED | 3 | 309 | - | - | |
Cpe20g00876 | 360 | Gene3D | - | 121 | 307 | IPR036457 | - | |
Cpe20g00876 | 360 | Gene3D | - | 308 | 359 | IPR036457 | - | |
Cpe20g00876 | 360 | SUPERFAMILY | PP2C-like | 130 | 358 | IPR036457 | - | |
Cpe20g00876 | 360 | ProSitePatterns | PPM-type phosphatase domain signature. | 162 | 170 | IPR000222 | GO:0043169 | |
Cpe20g00876 | 360 | PANTHER | PROTEIN PHOSPHATASE 2C FAMILY PROTEIN-RELATED | 308 | 359 | - | - | |
Cpe20g00876 | 360 | SMART | PP2C_4 | 123 | 354 | IPR001932 | - | |
Cpe20g00876 | 360 | PANTHER | PROTEIN PHOSPHATASE 2C | 308 | 359 | IPR015655 | GO:0004722|GO:0006470 | |
Cpe20g00876 | 360 | PANTHER | PROTEIN PHOSPHATASE 2C | 3 | 309 | IPR015655 | GO:0004722|GO:0006470 |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Cpe02g01187 | Cpe20g00876 | CCT | |
Cpe02g01187 | Cpe20g00876 | ECH |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cpe13g01170 | Cpe-Chr13:9244405 | Cpe20g00876 | Cpe-Chr20:7869092 | 1.04E-66 | dispersed | |
Cpe20g00876 | Cpe-Chr20:7869092 | Cpe07g00028 | Cpe-Chr7:147992 | 2.92E-57 | dispersed | |
Cpe01g01028 | Cpe-Chr1:6082343 | Cpe20g00876 | Cpe-Chr20:7869092 | 7.23E-95 | wgd | |
Cpe01g00122 | Cpe-Chr1:697885 | Cpe20g00876 | Cpe-Chr20:7869092 | 1.88E-99 | wgd | |
Cpe02g01187 | Cpe-Chr2:10796079 | Cpe20g00876 | Cpe-Chr20:7869092 | 0 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cpe20g00876 | K17506 | - | csv:101207841 | 553.518 |