Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe20g00876 ATGTCGGTCTCCGTCGCGGTGTCCAACTCGCCGGGATTTTCCCCTTCCTCCTCGATGTTCTGCAACAAGCCGTCGATTATTTCTCCGGCGCCGGAGGCGCTGACACTCACTTTGGCTCATTTGAATTCCTCGTCTTGCTCTTCTTCGCCTTCTTCGCCTTCTTCCCCTTTTCGGATTCGGTTTCCGAAGCCCCCTTCTGGGCTTTCCGCAGCGGCGGTGGCGGTGGCGGTGGCTTCCACCTCTTCTCCTTCATCGGCGTCGTCCGGCGCGATATTGAAAAGAAAAAGACCGGCGAGGTTGGATATTCCGTTGATGCCGTTGAGTTTTGCGGCTCCGGTGATGCCGTCGCCGTCGTCGTTCAGGGAGGTCGTGGAGGCAGAGAGAGATGGGTACTCTGTGTATTGCAAGAGAGGGAGGCGGAGAGTTTCCATGGAAGATCGGTGTTCCGCCGTCGTTGATCTTCGAGGAAATTCCAAAGAGGCGTTTTTTGGTGTTTTTGATGGACATGGCGGCGCAAAAGCTGCAGAATTTGCAGCAAATAACTTAGAGAAGAACATTTTGAATGAAATTGAAACAATGGCTGATAACGACACTGATTTTGAAGAAGCCATTAAACATGGCTACCTCACCACAGATTCTGAGTTCCTCAAGGAGGATCAACGCGGTGGCTCATGTTGTGTGACAGCCCTGATCAAGAAAGGCAACCTCGTCGTCTCCAACATCGGTGACTGTCGTGCTGTTCTCAGCAGCCACGGCATTGCCGAGGCTATCACGTCGGACCACCGCCCGTCCCGGGAAGACGAGAGGCAGCGGATCGAGTCCACGGGTGGATATGTTGATATGTGCAATAATGGGGTTTGGAGAGTGCAGGGGTCTCTGGCTGTCACAAGAGGAATTGGGGATGCTCACCTCAAACGATGGGTGAGCAATCAAGAAGCAGTGGAGATTGCACATCCATTGTGTGTAGGGATTGAGAAGGCGCAGCCATTGGTGGCGTGTAAAAAGCTTGTGGAGCTATCTATTTCAAGGGGCTCAGTTGATGACATTAGTGTAGTACTCATTCAATTGCCTAACTTCATCTAA 1083 52.26 MSVSVAVSNSPGFSPSSSMFCNKPSIISPAPEALTLTLAHLNSSSCSSSPSSPSSPFRIRFPKPPSGLSAAAVAVAVASTSSPSSASSGAILKRKRPARLDIPLMPLSFAAPVMPSPSSFREVVEAERDGYSVYCKRGRRRVSMEDRCSAVVDLRGNSKEAFFGVFDGHGGAKAAEFAANNLEKNILNEIETMADNDTDFEEAIKHGYLTTDSEFLKEDQRGGSCCVTALIKKGNLVVSNIGDCRAVLSSHGIAEAITSDHRPSREDERQRIESTGGYVDMCNNGVWRVQGSLAVTRGIGDAHLKRWVSNQEAVEIAHPLCVGIEKAQPLVACKKLVELSISRGSVDDISVVLIQLPNFI 360
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
20 7869092 7870907 + Cp4.1LG20g07940.1 Cpe20g00876 487505
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe20g00876 360 Pfam Protein phosphatase 2C 135 313 IPR001932 -
Cpe20g00876 360 CDD PP2Cc 130 356 IPR001932 -
Cpe20g00876 360 ProSiteProfiles PPM-type phosphatase domain profile. 130 356 IPR001932 -
Cpe20g00876 360 PANTHER PROTEIN PHOSPHATASE 2C FAMILY PROTEIN-RELATED 3 309 - -
Cpe20g00876 360 Gene3D - 121 307 IPR036457 -
Cpe20g00876 360 Gene3D - 308 359 IPR036457 -
Cpe20g00876 360 SUPERFAMILY PP2C-like 130 358 IPR036457 -
Cpe20g00876 360 ProSitePatterns PPM-type phosphatase domain signature. 162 170 IPR000222 GO:0043169
Cpe20g00876 360 PANTHER PROTEIN PHOSPHATASE 2C FAMILY PROTEIN-RELATED 308 359 - -
Cpe20g00876 360 SMART PP2C_4 123 354 IPR001932 -
Cpe20g00876 360 PANTHER PROTEIN PHOSPHATASE 2C 308 359 IPR015655 GO:0004722|GO:0006470
Cpe20g00876 360 PANTHER PROTEIN PHOSPHATASE 2C 3 309 IPR015655 GO:0004722|GO:0006470
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cpe02g01187 Cpe20g00876 CCT
Cpe02g01187 Cpe20g00876 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe13g01170 Cpe-Chr13:9244405 Cpe20g00876 Cpe-Chr20:7869092 1.04E-66 dispersed
Cpe20g00876 Cpe-Chr20:7869092 Cpe07g00028 Cpe-Chr7:147992 2.92E-57 dispersed
Cpe01g01028 Cpe-Chr1:6082343 Cpe20g00876 Cpe-Chr20:7869092 7.23E-95 wgd
Cpe01g00122 Cpe-Chr1:697885 Cpe20g00876 Cpe-Chr20:7869092 1.88E-99 wgd
Cpe02g01187 Cpe-Chr2:10796079 Cpe20g00876 Cpe-Chr20:7869092 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe20g00876 K17506 - csv:101207841 553.518