Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe20g00885 ATGTCGTCGACCACCGAGAAACCCGAACTCGTCTGCGTCACCGGCGGCAGTGGCTGTATTGGATCCTGGCTCGTTCACCTCCTCCTCCTCCGCGGCTACTCCGTTCACGCCACCGTCCAAAATCTCAAGGATGAGAACGAAACGAAGCATCTGGAGGCTTTAGAAGGAGCGGAGGCTCGTCTTCGTCTCTTCCAAATTGACCTCCTCGATTATGACTCCATTGCCGCCGCCGTCTCTGGTTGCTCCGGCGTCTTCCACGTTGCGTCTCCCTGCATTGTTGACCCTGTAGAAGATCCTGAGAGGGATTTACTGGATCCAGCTATCAAAGGAACCATCAATGTCCTGACGGCGGCTAAGGAGGCTGGGGTACAACGCGTAGTGGTAACTTCTTCTATTTCCTCCATGATTCCGAACCCGAACTGGCCAGAGAATGTTGTAATAAATGAAGAATGCTGGACAGATATTGATTACTGCAAGCAAAAGGGGCTGTGGTATTCAGTTTCGAAAACTCTAGCAGAAAAGGCTACTTGGGATTTTGCCAAGGAGAAAGGATTGGATGTGGTGGTGATTAATCCAGGCACAGTGATGGGCCCTGTGTTTCCTCCCAGAATTAATGCTAGCATGCAAATGCTTTTAAAACTTCTCAAGGGGTGCAATGAGACATTTGAGGACGTCTTTATCGGAGTTGTGCATTTTAAAGATGTTGCATTAGCACATATTTTGGTGTATGAAAACAAAGCAGCAACAGGAAGACACTTTTGTGCTGAGGCCATAGCTGGTTACTCGGACTATGCTGCCAAGGTTGCTGAACTCTTCCCTCAGTATGAGGTGCCCAGGTCGATAAAAGATACACAACCTGGTTTGGTGAGAACAAAAGATGGAGGTAAGAAGTTGATGAAGCTGGGGCTGGAATTCATCCCAATGGAACAAATCCTCAAGGACGCCGTTGAGGATCTTAAAAAGAAGGGATATATTTCCTGA 981 48.22 MSSTTEKPELVCVTGGSGCIGSWLVHLLLLRGYSVHATVQNLKDENETKHLEALEGAEARLRLFQIDLLDYDSIAAAVSGCSGVFHVASPCIVDPVEDPERDLLDPAIKGTINVLTAAKEAGVQRVVVTSSISSMIPNPNWPENVVINEECWTDIDYCKQKGLWYSVSKTLAEKATWDFAKEKGLDVVVINPGTVMGPVFPPRINASMQMLLKLLKGCNETFEDVFIGVVHFKDVALAHILVYENKAATGRHFCAEAIAGYSDYAAKVAELFPQYEVPRSIKDTQPGLVRTKDGGKKLMKLGLEFIPMEQILKDAVEDLKKKGYIS 326
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
20 7916839 7919921 - Cp4.1LG20g07860.1 Cpe20g00885 487514
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe20g00885 326 PANTHER NAD DEPENDENT EPIMERASE/DEHYDRATASE 9 317 - -
Cpe20g00885 326 PANTHER CINNAMOYL-COA REDUCTASE-LIKE PROTEIN 9 317 - -
Cpe20g00885 326 CDD FR_SDR_e 11 303 - -
Cpe20g00885 326 Gene3D - 2 326 - -
Cpe20g00885 326 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 7 320 IPR036291 -
Cpe20g00885 326 Pfam NAD dependent epimerase/dehydratase family 11 253 IPR001509 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe01g00793 Cpe-Chr1:4677585 Cpe20g00885 Cpe-Chr20:7916839 5.29E-110 dispersed
Cpe05g00491 Cpe-Chr5:2897595 Cpe20g00885 Cpe-Chr20:7916839 5.81E-90 dispersed
Cpe16g00372 Cpe-Chr16:5380868 Cpe20g00885 Cpe-Chr20:7916839 1.59E-73 dispersed
Cpe17g00233 Cpe-Chr17:1513021 Cpe20g00885 Cpe-Chr20:7916839 1.36E-82 dispersed
Cpe20g00885 Cpe-Chr20:7916839 Cpe12g00773 Cpe-Chr12:7020793 5.08E-84 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe20g00885 - - csv:101204420 576.244