Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe20g00898 ATGGTTGACAACGGCGAGGAGAAGTTGCTGGCTATGGCTCGCCACATAGCCAAGACCATGGGTCGCAACGAGTCCATGGCTGATGATATTCTTCACATTTTCTCCAATTTTGATGCTAGGTTTTCCCTCGATAAGTTGTCTGATAAGCCCGATGAGCTTGATCCCAGAGGCTCCGCCGATTTGCACCGCTCTCTCAAGTCTTTGGACCGCCGGATCTCCCAATACTTGGTCGCCGACCATCCAATTTGGGCTGACTCTGCTGATTCCTCTGCGTTTCTTGACGCTATCGATGAGTTGATGGCAATCATTAGGGACTGGACGCCGATGGCTAGGGATAAGTCTGTTGGCAACTACCTTGCTCGCGCTGACGATCTGATGCAGCAGGCGATGTTCCGCGTCGACCAAGAGTTCCGGTCGTTGATGGACCGTGGAGGTGAGTCTTTTGAACTTACTCGTCATTTCAGGAACGGCGAGTCAACTGGTGATTTCTGCTTCGATTCTGAGGAAGATGAGGATGTTGCGGAAGGAATTCTTGGCGATGGTCTCCAGATCCCTGTGGCGCAGCCGGTGACGGACTACAACATCGTTATCGACGCGCTTCCGTCGGGGACTATCGGCGATCTCCATGAGATAGCGAAGCGTATGGTTGCGGCTGGGTTCGAGAAGGAGTGCTCGCACGCTTACAGTAGCTGCAGGAGGGAGTTCTTGGAGGAGAGTCTTTCTAGGTTGGGGTTACAGAAACTGAGCATCGATGAAGTTCAAAAGATGCAATGGCATGACCTTGAAGAGGAGATTGAGCGCTGGATGAAAGCGATTAGCGTCTCCCTTCGAGTTCTCTTCCCAAGCGAACGACACCTCTGCGAACGCGTCTTCGTCGGCCTCTCCTCCACCGCGAATCTCTCTTTCATGGAGGTCTGTCGAGGATCGACGATCCAGCTATTGAATTTTGCAGATGCGGTGGCAATTGGCTCCCGCGCGCCAGAACGACTCTTCAAAATTATCGATATGTTCGAAACCTTGAGAGACTTGATGCCAGAGTTCGATTCAGTATTTGCAGACCAGTACTGTTCGTTTCTTAGAAATGAAGCACTCACAATCTGGAAAAGTTTTGGCGGAACAATCAAGGGGATCTTCATGGAGCTTGAGAATTTGATCCGTCGTGATCCGGCTAAGACTCCGGTGCCGGGGGGCGGCCTTCATCCAATCACTCGATATGTGATGAATTACCTTAGAGCAGCCTGTAAATCGCGGCAGACTCTGGAGCAAGTTTTCGAAGAAGTCGCTCTTACCTCCAAGGACTACAGCAAGCTCGAGGACAGAGCAGCAGCATCATCGTCATCGTTGTCAGTTCAAATGGAGTGGATTATGGAGGTTTTAGAGAGCAATTTAGAGGCGAAGTCCAAGATATACAAGGATCTTTCCTTAAGCTCTGTGTTTCTGATGAACAATGGGCGATACATTGTCCAGAAAGTGAAAGACAGTGAATTAGGATCAGTTTTAGGTGAGGATTGGATTCGAAAGCACTCCGTTAAAAACCGGCAATACCTTGGGAATTACCTGAGAAGCTCATGGAGCAAGGTGATCGGAGTGTTGAAAGTGGACAGTGGCTCTTTAGCTCCGGCTGCGATGAAGGAGAAGCTCCAATCATTCAACGTACAGTTTGAACAAGTCTGCCAAACCCAATCCACATGGGTGATATTCGAGCATCAGCTTAGAGAAGAAGCAAGAATCTCAGTCGCCAAAACCCTGTTGCCGGCATATCAAAAGTTCGTCGGAAGGTACCAGAGTTTGCCGGAGTTGGCAAAGCGTACAGACCGGTATTTGAAGTACACGGTGGAGGATGTGGAGGGTCGAATCACCGAGCTGTTCGAAGGAGGAGGCGGCGGCGGCGGCGGCGGCGGCGGGAGGAGGTGA 1914 50.78 MVDNGEEKLLAMARHIAKTMGRNESMADDILHIFSNFDARFSLDKLSDKPDELDPRGSADLHRSLKSLDRRISQYLVADHPIWADSADSSAFLDAIDELMAIIRDWTPMARDKSVGNYLARADDLMQQAMFRVDQEFRSLMDRGGESFELTRHFRNGESTGDFCFDSEEDEDVAEGILGDGLQIPVAQPVTDYNIVIDALPSGTIGDLHEIAKRMVAAGFEKECSHAYSSCRREFLEESLSRLGLQKLSIDEVQKMQWHDLEEEIERWMKAISVSLRVLFPSERHLCERVFVGLSSTANLSFMEVCRGSTIQLLNFADAVAIGSRAPERLFKIIDMFETLRDLMPEFDSVFADQYCSFLRNEALTIWKSFGGTIKGIFMELENLIRRDPAKTPVPGGGLHPITRYVMNYLRAACKSRQTLEQVFEEVALTSKDYSKLEDRAAASSSSLSVQMEWIMEVLESNLEAKSKIYKDLSLSSVFLMNNGRYIVQKVKDSELGSVLGEDWIRKHSVKNRQYLGNYLRSSWSKVIGVLKVDSGSLAPAAMKEKLQSFNVQFEQVCQTQSTWVIFEHQLREEARISVAKTLLPAYQKFVGRYQSLPELAKRTDRYLKYTVEDVEGRITELFEGGGGGGGGGGGRR 637
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
20 7983527 7985440 + Cp4.1LG20g07730.1 Cpe20g00898 487527

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe20g00898 637 PANTHER EXOCYST COMPLEX COMPONENT EXO70B1 30 624 - -
Cpe20g00898 637 Pfam Exo70 exocyst complex subunit 266 620 IPR046364 GO:0000145|GO:0005546|GO:0006887
Cpe20g00898 637 Gene3D Exocyst complex component Exo70 82 628 - -
Cpe20g00898 637 PANTHER EXOCYST COMPLEX PROTEIN EXO70 30 624 IPR004140 GO:0000145|GO:0006887
Cpe20g00898 637 SUPERFAMILY Cullin repeat-like 83 624 IPR016159 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe20g00898 K07195 EXOC7, EXO70; exocyst complex component 7 - csv:101204511 1118.22
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cpe02g01140 Cpe20g00898 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe09g00962 Cpe-Chr9:8594080 Cpe20g00898 Cpe-Chr20:7983527 4.18E-120 dispersed
Cpe13g00544 Cpe-Chr13:5496933 Cpe20g00898 Cpe-Chr20:7983527 7.06E-119 dispersed
Cpe20g00308 Cpe-Chr20:1732404 Cpe20g00898 Cpe-Chr20:7983527 1.62E-115 dispersed
Cpe02g01140 Cpe-Chr2:10387370 Cpe20g00898 Cpe-Chr20:7983527 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi6g709 . . Bda02g00882 . Bpe01g00069 . . . Cmo13g00020 . Cma01g00707 Cma13g00032 Car01g00642 Car13g00010 Sed13g1351 . Cpe20g00898 Bhi08g00343 Tan01g2524 Cmetu12g0712 . . . Lcy11g0247 . . . . . . . Cone1ag0768 Cone5ag1050 . . . . . . . Blo14g00063 . . . . . . . . . . . . . . Cpe02g01140 . . . . . . . . . . . . . . . . . .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cpe01g01290 CCT 10 651 EXO70 exocyst subunit family AT5G03540 74.9 1.7e-277 952.2
Cpe09g00367 CCT 10 641 EXO70 exocyst subunit family AT5G03540 74.9 5.0e-277 950.7
Cpe10g00315 CCT 1 639 EXO70 exocyst subunit family AT5G03540 67.1 4.9e-248 854.4
Cpe19g00500 CCT 1 620 EXO70 exocyst subunit family AT5G03540 65.8 2.2e-240 828.9
Cpe10g00315 CCT 1 639 EXO70 exocyst subunit family AT5G52340 74.7 2.1e-277 951.8
Cpe01g01290 CCT 12 651 EXO70 exocyst subunit family AT5G52340 73.6 1.6e-269 925.6
Cpe19g00500 CCT 1 620 EXO70 exocyst subunit family AT5G52340 72.8 2.1e-269 925.2
Cpe09g00367 CCT 12 641 EXO70 exocyst subunit family AT5G52340 72.1 2.2e-261 898.7
Cpe01g01290 CCT 147 651 EXO70 exocyst subunit family AT5G52350 58.7 4.1e-166 582.0
Cpe10g00315 CCT 145 632 EXO70 exocyst subunit family AT5G52350 60.3 5.1e-164 575.1
Cpe09g00367 CCT 147 641 EXO70 exocyst subunit family AT5G52350 57.3 9.2e-158 554.3
Cpe19g00500 CCT 145 613 EXO70 exocyst subunit family AT5G52350 58.0 8.7e-156 547.7
Cpe20g00898 CCT 1 625 EXO70 exocyst subunit family AT5G58430 65.7 4.9e-242 834.3
Cpe02g01140 CCT 1 624 EXO70 exocyst subunit family AT5G58430 65.6 5.5e-241 830.9
Cpe20g00898 CCT 1 624 EXO70 exocyst subunit family AT1G07000 52.0 6.5e-175 611.3
Cpe02g01140 CCT 1 623 EXO70 exocyst subunit family AT1G07000 50.9 5.2e-172 601.7
Cpe08g00067 . 58 671 EXO70 exocyst subunit family AT5G13150 51.5 1.9e-167 586.6
Cpe03g01216 . 62 676 EXO70 exocyst subunit family AT5G13150 50.2 2.7e-166 582.8
Cpe13g00544 . 66 602 EXO70 exocyst subunit family AT5G13150 51.1 1.5e-153 540.4
Cpe01g01977 . 81 677 EXO70 exocyst subunit family AT5G13990 54.5 1.6e-185 646.7
Cpe13g00544 . 64 603 EXO70 exocyst subunit family AT5G13990 56.4 3.4e-175 612.5
Cpe03g01013 . 12 611 EXO70 exocyst subunit family AT1G72470 64.1 9.8e-214 740.3
Cpe02g01761 CCT,ECH 12 599 EXO70 exocyst subunit family AT1G72470 61.7 4.0e-199 691.8
Cpe03g01013 . 12 609 EXO70 exocyst subunit family AT1G54090 62.3 1.2e-208 723.4
Cpe02g01761 CCT,ECH 9 594 EXO70 exocyst subunit family AT1G54090 59.8 1.1e-193 673.7
Cpe03g01013 . 9 610 EXO70 exocyst subunit family AT3G14090 63.4 1.4e-217 753.1
Cpe02g01761 CCT,ECH 9 594 EXO70 exocyst subunit family AT3G14090 61.3 1.1e-201 700.3
Cpe04g01614 CCT,CST 14 648 EXO70 exocyst subunit family AT5G50380 62.8 9.9e-228 786.9
Cpe18g00900 . 13 651 EXO70 exocyst subunit family AT5G50380 62.2 2.9e-227 785.4
Cpe09g00962 CCT 15 654 EXO70 exocyst subunit family AT5G50380 62.6 1.1e-226 783.5
Cpe20g00308 CCT,CST 17 624 EXO70 exocyst subunit family AT5G50380 61.6 3.4e-212 735.3
Cpe11g00545 . 15 684 EXO70 exocyst subunit family AT4G31540 73.3 5.7e-292 1000.3
Cpe07g00257 . 55 722 EXO70 exocyst subunit family AT4G31540 73.1 1.7e-291 998.8
Cpe01g00211 . 35 591 EXO70 exocyst subunit family AT3G55150 50.3 2.3e-146 516.5
Cpe01g01118 . 9 591 EXO70 exocyst subunit family AT2G39380 50.7 5.9e-150 528.5
Cpe03g00140 . 26 630 EXO70 exocyst subunit family AT3G09520 55.5 1.1e-180 630.6
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009102 1 1 1 0 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 1 0 1 33
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe20g00898 Cpe_Chr20 FPKM 11.877991 13.190718 17.206047 18.286467 13.379321 13.441626 13.765225 27.556305 25.316418 25.30608