Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre01g0200 ATGTTCCATCCTAAGAAAGCTTCGACTATGAATTCTCACGAGAGAGGGATGTGCGTTCAAGGCGACTCCGGTCTCGTCCTCACCACCGACCCCAAGCCCCGCCTTCGCTGGACTGTTGAGCTTCATGAGCGCTTTGTCGATGCTGTCACTCAGCTCGGAGGCCCTGATAAGGCTACACCAAAGACCATCATGAGAGTTATGGGTGTAAAGGGTCTTACACTTTACCACCTCAAGAGCCATCTCCAGAAATTTAGATTGGGAAAGCAGCCTCACAAGGAATTCAATGATCATTCAATTAAGGATGGTATGAGAGCCTCAGGTTTAGAACTTCATCGAAACACGGCTTCTTCATCCAATATGATCAACCGCACCATGAATGATGGTAACTCACACATGGTTGATGCGATTAGGATGCAAATGGAGGTGCAGAGAAGATTGCATGAGCAACTAGAGGTGCAAAGACACTTGCAGTTGCGGATCGAGGCACAAGGGAAGTATATGCAGAGTATATTAGAAAAGGCTTGTCAAACCCTAGCGGGTGAAAACATGGCAGCTTCCGGCGGCTACAAGGCCATGGGGGGCATCCCAAATAATAATAATAATCAGCAAGGCATTAGCGACATGGCCGGAGCCGGAGGGATCAAAGATTTTGGCTCCCCTCTCGGCTTCCCTTCTTTTCAAGACCTGAACCTCTATGGAGGCGACCACCTTGATCTTCAGCAAAACGTGGATGGATTCATGCCTCACAACGACAGTTTACTGTGCTTGGGAAAGAAGAAGCCGAGGCCCCCGCCATCTACGCCAAACTACGGCGCCAGCTCGGGAAAAGGTGCATTGGACTGGCCGGACGATCTCCGGCTGCAAGATATAGGAATGGCACCGCCGTCCTGCGTGGGGCAGCAAGAAGATGATTTCAAAGGCATTGGTGGGACGCTGGTGGAAAGAGATCATTTGGAGGAAATGTATGAGGCAAAGCCAGTAGTGTCGGATGAAGGCATTGGGGATCACAAGAAGTATGACATCAATAATAATGATAATAATAACAACAACAATAATAATGCGTCCATAAAGCTTCAGAGGCCGTCCCCCAGAAGGGCACCCCTTTCCATGGATAGGGCCAACCACCCTCTTACCACTGCTCCTCAGTCCACACATTCACCTTTTGGTTAA 1170 49.32 MFHPKKASTMNSHERGMCVQGDSGLVLTTDPKPRLRWTVELHERFVDAVTQLGGPDKATPKTIMRVMGVKGLTLYHLKSHLQKFRLGKQPHKEFNDHSIKDGMRASGLELHRNTASSSNMINRTMNDGNSHMVDAIRMQMEVQRRLHEQLEVQRHLQLRIEAQGKYMQSILEKACQTLAGENMAASGGYKAMGGIPNNNNNQQGISDMAGAGGIKDFGSPLGFPSFQDLNLYGGDHLDLQQNVDGFMPHNDSLLCLGKKKPRPPPSTPNYGASSGKGALDWPDDLRLQDIGMAPPSCVGQQEDDFKGIGGTLVERDHLEEMYEAKPVVSDEGIGDHKKYDINNNDNNNNNNNNASIKLQRPSPRRAPLSMDRANHPLTTAPQSTHSPFG 389
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 1398275 1400327 - CrPI670011_01g002000.1 Cre01g0200 487745

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cre01g0200 389 Pfam MYB-CC type transfactor, LHEQLE motif 132 177 IPR025756 -
Cre01g0200 389 Gene3D - 31 89 - -
Cre01g0200 389 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL11 8 198 IPR046955 GO:0003700(InterPro)
Cre01g0200 389 FunFam Myb family transcription factor 31 89 - -
Cre01g0200 389 MobiDBLite consensus disorder prediction 323 342 - -
Cre01g0200 389 MobiDBLite consensus disorder prediction 375 389 - -
Cre01g0200 389 NCBIfam myb-like DNA-binding domain, SHAQKYF class 32 87 IPR006447 GO:0003677(InterPro)
Cre01g0200 389 MobiDBLite consensus disorder prediction 343 359 - -
Cre01g0200 389 MobiDBLite consensus disorder prediction 258 277 - -
Cre01g0200 389 SUPERFAMILY Homeodomain-like 31 87 IPR009057 -
Cre01g0200 389 Pfam Myb-like DNA-binding domain 34 84 IPR001005 -
Cre01g0200 389 MobiDBLite consensus disorder prediction 323 389 - -
Cre01g0200 389 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 29 89 IPR017930 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre01g0200 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre01g0200 Cre-Chr1:1398275 Cre04g1728 Cre-Chr4:35400296 3.70E-32 dispersed
Cre05g0421 Cre-Chr5:3812518 Cre01g0200 Cre-Chr1:1398275 1.10E-42 transposed
Cre07g0585 Cre-Chr7:3622578 Cre01g0200 Cre-Chr1:1398275 8.50E-33 transposed
Cre10g1479 Cre-Chr10:28623454 Cre01g0200 Cre-Chr1:1398275 7.80E-35 transposed
Cre01g0200 Cre-Chr1:1398275 Cre02g2184 Cre-Chr2:35487802 6.40E-85 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cre05g0421 . 12 267 G2-like Transcription Factor Family AT3G24120 63.9 1.1e-79 293.9
Cre01g0200 . 16 176 G2-like Transcription Factor Family AT3G24120 59.8 6.7e-42 168.3
Cre02g2184 . 22 192 G2-like Transcription Factor Family AT3G24120 54.6 4.8e-40 162.2
Cre07g0585 . 4 152 G2-like Transcription Factor Family AT3G24120 54.9 1.1e-39 161.0
Cre04g1728 . 31 149 G2-like Transcription Factor Family AT3G24120 67.2 3.8e-37 152.5
Cre05g1232 . 163 363 G2-like Transcription Factor Family AT5G16560 56.5 8.7e-45 178.3
Cre09g1112 . 197 401 G2-like Transcription Factor Family AT5G16560 51.7 1.3e-40 164.5
Cre05g2130 . 1 167 G2-like Transcription Factor Family AT5G42630 58.9 5.5e-41 164.9
Cre08g1490 . 53 139 G2-like Transcription Factor Family AT5G42630 83.9 1.4e-36 150.2
Cre05g2473 . 19 256 G2-like Transcription Factor Family AT1G25550 55.1 3.5e-53 205.7
Cre08g0476 . 20 258 G2-like Transcription Factor Family AT1G25550 54.1 6.6e-52 201.4
Cre03g0444 . 1 269 G2-like Transcription Factor Family AT3G46640 51.7 2.7e-60 229.6
Cre04g0637 . 1 301 G2-like Transcription Factor Family AT5G05090 57.1 4.5e-74 275.0
Cre10g1770 . 1 283 G2-like Transcription Factor Family AT5G05090 53.8 7.5e-69 257.7
Cre05g0421 . 12 315 G2-like Transcription Factor Family AT4G13640 58.0 2.5e-65 246.1
Cre05g0421 . 12 267 G2-like Transcription Factor Family AT3G24120 63.9 1.1e-79 293.9
Cre01g0200 . 16 176 G2-like Transcription Factor Family AT3G24120 59.8 6.7e-42 168.3
Cre02g2184 . 22 192 G2-like Transcription Factor Family AT3G24120 54.6 4.8e-40 162.2
Cre07g0585 . 4 152 G2-like Transcription Factor Family AT3G24120 54.9 1.1e-39 161.0
Cre04g1728 . 31 149 G2-like Transcription Factor Family AT3G24120 67.2 3.8e-37 152.5
Cre11g1402 . 1 228 G2-like Transcription Factor Family AT1G69580 55.6 2.9e-49 193.0
Cre01g0200 . 1 389 G2-like Transcription Factor Family AT1G79430 53.7 6.5e-84 308.1
Cre02g2184 . 1 181 G2-like Transcription Factor Family AT1G79430 85.8 8.0e-74 274.6
Cre05g0421 . 39 203 G2-like Transcription Factor Family AT1G79430 61.2 3.7e-39 159.5
Cre04g1727 . 102 344 G2-like Transcription Factor Family AT2G01060 62.3 2.2e-56 216.1
Cre04g0637 . 1 301 G2-like Transcription Factor Family AT3G10760 63.0 1.4e-91 333.6
Cre10g1770 . 1 283 G2-like Transcription Factor Family AT3G10760 58.4 3.0e-83 305.8
Cre04g0637 . 1 203 G2-like Transcription Factor Family AT2G40970 60.2 2.7e-60 229.2
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001069 3 4 3 4 3 2 4 2 2 2 2 2 4 2 2 4 2 3 3 2 2 2 2 2 2 2 1 6 5 2 81
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
52965 PF00249 Myb_DNA-binding 2.20E-06 CL0123 Cre TF