Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre01g0200 ATGTTCCATCCTAAGAAAGCTTCGACTATGAATTCTCACGAGAGAGGGATGTGCGTTCAAGGCGACTCCGGTCTCGTCCTCACCACCGACCCCAAGCCCCGCCTTCGCTGGACTGTTGAGCTTCATGAGCGCTTTGTCGATGCTGTCACTCAGCTCGGAGGCCCTGATAAGGCTACACCAAAGACCATCATGAGAGTTATGGGTGTAAAGGGTCTTACACTTTACCACCTCAAGAGCCATCTCCAGAAATTTAGATTGGGAAAGCAGCCTCACAAGGAATTCAATGATCATTCAATTAAGGATGGTATGAGAGCCTCAGGTTTAGAACTTCATCGAAACACGGCTTCTTCATCCAATATGATCAACCGCACCATGAATGATGGTAACTCACACATGGTTGATGCGATTAGGATGCAAATGGAGGTGCAGAGAAGATTGCATGAGCAACTAGAGGTGCAAAGACACTTGCAGTTGCGGATCGAGGCACAAGGGAAGTATATGCAGAGTATATTAGAAAAGGCTTGTCAAACCCTAGCGGGTGAAAACATGGCAGCTTCCGGCGGCTACAAGGCCATGGGGGGCATCCCAAATAATAATAATAATCAGCAAGGCATTAGCGACATGGCCGGAGCCGGAGGGATCAAAGATTTTGGCTCCCCTCTCGGCTTCCCTTCTTTTCAAGACCTGAACCTCTATGGAGGCGACCACCTTGATCTTCAGCAAAACGTGGATGGATTCATGCCTCACAACGACAGTTTACTGTGCTTGGGAAAGAAGAAGCCGAGGCCCCCGCCATCTACGCCAAACTACGGCGCCAGCTCGGGAAAAGGTGCATTGGACTGGCCGGACGATCTCCGGCTGCAAGATATAGGAATGGCACCGCCGTCCTGCGTGGGGCAGCAAGAAGATGATTTCAAAGGCATTGGTGGGACGCTGGTGGAAAGAGATCATTTGGAGGAAATGTATGAGGCAAAGCCAGTAGTGTCGGATGAAGGCATTGGGGATCACAAGAAGTATGACATCAATAATAATGATAATAATAACAACAACAATAATAATGCGTCCATAAAGCTTCAGAGGCCGTCCCCCAGAAGGGCACCCCTTTCCATGGATAGGGCCAACCACCCTCTTACCACTGCTCCTCAGTCCACACATTCACCTTTTGGTTAA 1170 49.32 MFHPKKASTMNSHERGMCVQGDSGLVLTTDPKPRLRWTVELHERFVDAVTQLGGPDKATPKTIMRVMGVKGLTLYHLKSHLQKFRLGKQPHKEFNDHSIKDGMRASGLELHRNTASSSNMINRTMNDGNSHMVDAIRMQMEVQRRLHEQLEVQRHLQLRIEAQGKYMQSILEKACQTLAGENMAASGGYKAMGGIPNNNNNQQGISDMAGAGGIKDFGSPLGFPSFQDLNLYGGDHLDLQQNVDGFMPHNDSLLCLGKKKPRPPPSTPNYGASSGKGALDWPDDLRLQDIGMAPPSCVGQQEDDFKGIGGTLVERDHLEEMYEAKPVVSDEGIGDHKKYDINNNDNNNNNNNNASIKLQRPSPRRAPLSMDRANHPLTTAPQSTHSPFG 389
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 1398275 1400327 - CrPI670011_01g002000.1 Cre01g0200 487745
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre01g0200 389 Pfam MYB-CC type transfactor, LHEQLE motif 132 177 IPR025756 -
Cre01g0200 389 Gene3D - 31 89 - -
Cre01g0200 389 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL11 8 198 IPR046955 GO:0003700(InterPro)
Cre01g0200 389 FunFam Myb family transcription factor 31 89 - -
Cre01g0200 389 MobiDBLite consensus disorder prediction 323 342 - -
Cre01g0200 389 MobiDBLite consensus disorder prediction 375 389 - -
Cre01g0200 389 NCBIfam myb-like DNA-binding domain, SHAQKYF class 32 87 IPR006447 GO:0003677(InterPro)
Cre01g0200 389 MobiDBLite consensus disorder prediction 343 359 - -
Cre01g0200 389 MobiDBLite consensus disorder prediction 258 277 - -
Cre01g0200 389 SUPERFAMILY Homeodomain-like 31 87 IPR009057 -
Cre01g0200 389 Pfam Myb-like DNA-binding domain 34 84 IPR001005 -
Cre01g0200 389 MobiDBLite consensus disorder prediction 323 389 - -
Cre01g0200 389 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 29 89 IPR017930 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre01g0200 Cre-Chr1:1398275 Cre04g1728 Cre-Chr4:35400296 3.70E-32 dispersed
Cre05g0421 Cre-Chr5:3812518 Cre01g0200 Cre-Chr1:1398275 1.10E-42 transposed
Cre07g0585 Cre-Chr7:3622578 Cre01g0200 Cre-Chr1:1398275 8.50E-33 transposed
Cre10g1479 Cre-Chr10:28623454 Cre01g0200 Cre-Chr1:1398275 7.80E-35 transposed
Cre01g0200 Cre-Chr1:1398275 Cre02g2184 Cre-Chr2:35487802 6.40E-85 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
52965 PF00249 Myb_DNA-binding 2.20E-06 CL0123 Cre TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre01g0200 - - - 0.0