Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cre01g0200 | ATGTTCCATCCTAAGAAAGCTTCGACTATGAATTCTCACGAGAGAGGGATGTGCGTTCAAGGCGACTCCGGTCTCGTCCTCACCACCGACCCCAAGCCCCGCCTTCGCTGGACTGTTGAGCTTCATGAGCGCTTTGTCGATGCTGTCACTCAGCTCGGAGGCCCTGATAAGGCTACACCAAAGACCATCATGAGAGTTATGGGTGTAAAGGGTCTTACACTTTACCACCTCAAGAGCCATCTCCAGAAATTTAGATTGGGAAAGCAGCCTCACAAGGAATTCAATGATCATTCAATTAAGGATGGTATGAGAGCCTCAGGTTTAGAACTTCATCGAAACACGGCTTCTTCATCCAATATGATCAACCGCACCATGAATGATGGTAACTCACACATGGTTGATGCGATTAGGATGCAAATGGAGGTGCAGAGAAGATTGCATGAGCAACTAGAGGTGCAAAGACACTTGCAGTTGCGGATCGAGGCACAAGGGAAGTATATGCAGAGTATATTAGAAAAGGCTTGTCAAACCCTAGCGGGTGAAAACATGGCAGCTTCCGGCGGCTACAAGGCCATGGGGGGCATCCCAAATAATAATAATAATCAGCAAGGCATTAGCGACATGGCCGGAGCCGGAGGGATCAAAGATTTTGGCTCCCCTCTCGGCTTCCCTTCTTTTCAAGACCTGAACCTCTATGGAGGCGACCACCTTGATCTTCAGCAAAACGTGGATGGATTCATGCCTCACAACGACAGTTTACTGTGCTTGGGAAAGAAGAAGCCGAGGCCCCCGCCATCTACGCCAAACTACGGCGCCAGCTCGGGAAAAGGTGCATTGGACTGGCCGGACGATCTCCGGCTGCAAGATATAGGAATGGCACCGCCGTCCTGCGTGGGGCAGCAAGAAGATGATTTCAAAGGCATTGGTGGGACGCTGGTGGAAAGAGATCATTTGGAGGAAATGTATGAGGCAAAGCCAGTAGTGTCGGATGAAGGCATTGGGGATCACAAGAAGTATGACATCAATAATAATGATAATAATAACAACAACAATAATAATGCGTCCATAAAGCTTCAGAGGCCGTCCCCCAGAAGGGCACCCCTTTCCATGGATAGGGCCAACCACCCTCTTACCACTGCTCCTCAGTCCACACATTCACCTTTTGGTTAA | 1170 | 49.32 | MFHPKKASTMNSHERGMCVQGDSGLVLTTDPKPRLRWTVELHERFVDAVTQLGGPDKATPKTIMRVMGVKGLTLYHLKSHLQKFRLGKQPHKEFNDHSIKDGMRASGLELHRNTASSSNMINRTMNDGNSHMVDAIRMQMEVQRRLHEQLEVQRHLQLRIEAQGKYMQSILEKACQTLAGENMAASGGYKAMGGIPNNNNNQQGISDMAGAGGIKDFGSPLGFPSFQDLNLYGGDHLDLQQNVDGFMPHNDSLLCLGKKKPRPPPSTPNYGASSGKGALDWPDDLRLQDIGMAPPSCVGQQEDDFKGIGGTLVERDHLEEMYEAKPVVSDEGIGDHKKYDINNNDNNNNNNNNASIKLQRPSPRRAPLSMDRANHPLTTAPQSTHSPFG | 389 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
1 | 1398275 | 1400327 | - | CrPI670011_01g002000.1 | Cre01g0200 | 487745 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cre01g0200 | 389 | Pfam | MYB-CC type transfactor, LHEQLE motif | 132 | 177 | IPR025756 | - | |
Cre01g0200 | 389 | Gene3D | - | 31 | 89 | - | - | |
Cre01g0200 | 389 | PANTHER | MYB FAMILY TRANSCRIPTION FACTOR PHL11 | 8 | 198 | IPR046955 | GO:0003700(InterPro) | |
Cre01g0200 | 389 | FunFam | Myb family transcription factor | 31 | 89 | - | - | |
Cre01g0200 | 389 | MobiDBLite | consensus disorder prediction | 323 | 342 | - | - | |
Cre01g0200 | 389 | MobiDBLite | consensus disorder prediction | 375 | 389 | - | - | |
Cre01g0200 | 389 | NCBIfam | myb-like DNA-binding domain, SHAQKYF class | 32 | 87 | IPR006447 | GO:0003677(InterPro) | |
Cre01g0200 | 389 | MobiDBLite | consensus disorder prediction | 343 | 359 | - | - | |
Cre01g0200 | 389 | MobiDBLite | consensus disorder prediction | 258 | 277 | - | - | |
Cre01g0200 | 389 | SUPERFAMILY | Homeodomain-like | 31 | 87 | IPR009057 | - | |
Cre01g0200 | 389 | Pfam | Myb-like DNA-binding domain | 34 | 84 | IPR001005 | - | |
Cre01g0200 | 389 | MobiDBLite | consensus disorder prediction | 323 | 389 | - | - | |
Cre01g0200 | 389 | ProSiteProfiles | Myb-type HTH DNA-binding domain profile. | 29 | 89 | IPR017930 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cre01g0200 | Cre-Chr1:1398275 | Cre04g1728 | Cre-Chr4:35400296 | 3.70E-32 | dispersed | |
Cre05g0421 | Cre-Chr5:3812518 | Cre01g0200 | Cre-Chr1:1398275 | 1.10E-42 | transposed | |
Cre07g0585 | Cre-Chr7:3622578 | Cre01g0200 | Cre-Chr1:1398275 | 8.50E-33 | transposed | |
Cre10g1479 | Cre-Chr10:28623454 | Cre01g0200 | Cre-Chr1:1398275 | 7.80E-35 | transposed | |
Cre01g0200 | Cre-Chr1:1398275 | Cre02g2184 | Cre-Chr2:35487802 | 6.40E-85 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
52965 | PF00249 | Myb_DNA-binding | 2.20E-06 | CL0123 | Cre | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cre01g0200 | - | - | - | 0.0 |