Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre01g0222 ATGTTAGGCACGTGGGCCGGGCTTGACTACGGCGTGCTTGCAGTTGGTGTGGTGGTCTCAGCGTGGGCTTTGGGCCGTAGCCAACCACACAATCTTCGCAACTGGCAACCGGCGCAGAGGCAGACCCAAGAAATAATAAGAGGTTTCATCTTTGTTCTTTGTGCTATTGCTTCCATCGTCGCCCACCTGATTGTTTTGTCTCAAGCTCAGAATTCAACTCTACCCCCCACCGATCCTGATCAAGCAAGAGCTCTGAATTCCATATTTCGACAATGGCGTATATCGGCTCCATCAGGGGCGTGGAATATAAGCGGGAATCTGTGCAGTGGGAGAGCTGTCGACACTACAACCCCCATCGATAGTAATGGAAACCTCAATCCTCTTATAAAATGTGATTGCTCAGCCAACAATGGTGCTACTTGCCTCATTACTCAACTGCACGTTTATGCGATAAATGTTGTTGGTGTACTCCCACCAGAGCTATGGACATTAACTTCCCTCACCTATCTGAAGCTGGATCAAAATTTCTTGACAGGAACATTATCTGCATCTGTTGGCAATCTCACAGAATTGCGAACCTTGAGCCTGGGCATTAATGCATTATCAGGGGAACTTCCGAAGGAACTTGGATCTCTTTCTAAACTAGAAGTATTGGCATTCGGGTCCAACAATTTCTCTGGTCCCTTACCGTCAGAGCTTGGAAATCTTTCTATGTTAAGGGAGCTATACATTGATAGCTCTGGAGTTTCTGGTGGTATTCCTCCATCATTTTCAAGTCTGAGAAACTTGCAGACGGTATGGGCATCAGACAATGAATTCACTGGCAGAATACCTGATTTCATCGGGAGTTGGACAAGGCTCACATCTCTGAGGTTTCAAGGAAACTCTTTTACAGGTCCTATACCATCGACATTTTCAAACTTGACATCTCTGACTGAGTTGAGAATAGGTGATTTATCCAATGGGAGCTCTTCTCTGGCATTCGTCAGTAATATGACATCTCTAACTATCCTGGTGTTGAGAAATAATAATATGACTGGTTCAATTCCATCCAACATTGGAGGATTTCGTAGACTTACTCAGCTGGACTTGAGCTTCAACAACTTGACAGGAGAGATTCCAAGCTCGCTTTTCAGTTTGAGTTCACTGTCACACTTGATTCTTGGAAATAATAAGTTAAATGGGACCCTACCTACACAGAAGAGTGCTTCACTTCTAAATATAGACTTGTCATATAATGATTTATCAGGGAGCTTTCCTGCTTGGATCAACGAGCAAAACTTACAACTAAATTTAGTCGCCAACAATTTCACAATTGACAGTGCTAGTATCAGTGGTTTGCCTTCTGGATTGAATTGTCTTCAACGCAACTTTCCTTGTAATCGAGGTCGTCCAATATATTCTGATTTTGGGATCAAGTGTGGAGGTCCACAGATCAGAAGTTCATCAGGGATTTTGTTTGAAAGAGAAAATGAGACTCTCGGTCCTGCTACGTACTTTGTTACTGAGTCACAAAGGTGGGCCGTTAGTAATACTGGATACTTTACTGGGACCAACAATCCTCAATACACAGCCAATACGTTGTCTCAATTCCCAAACACCCTTGACACAGAACTTTTTCAGACACAGCGACTATCTGCTTCATCATTGAGATACTATGGACTAGGGCTTGAGAATGGCAACTACACTGTGAACCTTCATTTTGCAGAGCTAGCTTTCCCAGATTCAAATACATGGCAAAGCCGTGGGAGGCGTCTCTTTGATATATATATACAGGGAAATCGTGTGTTACAGAGTTTTGATATTAGAAAGGAGGCAGGTGGGTCTTTCCTTGCTGTCAGAAAGAATTTTACGGCTGAAGTTACAGAGAACTTCCTGGAAATTCATCTCTTTTGGGCGGGGAAAGGTACTTGCTGCATACCTAAACAGGGTGATTTTGGACCCGCTGTTTCAGCCATCAGTGCTACCCCAGATTTTGTACCAACTGTCAGTAATGTTCCTCCAAGTACTAAGGAGAATAGAACGGGCCTAATCGTAGGGCTCGTTGTTGGTTTAGGATCTGTTTTCTTTCTGATTATTGGCGCAGTTTTCCTTGTTGTTCAGAGAAGGAAAAGGCGTCGCGCCTATGAAGATGAAGAGCTCCTAGGAATAGACACTAGACCGTACACTTTTAGTTTTTCTGAATTAAGGAGTGCTACAAATGACTTTAATTCATCCAACAAACTTGGCGAGGGAGGATTTGGACCTGTTTACAAGGGAACATTAAATGATGGAAGAGTGGTTGCTGTGAAGCAACTTTCAGTGGCATCCCACCAAGGAAAGAGCCAGTTTGTTGCTGAGATTGCTACAATATCTGCAGTGCAACATCGTAACCTTGTGAAATTATATGGATGTTGCATTGAGGCCGATAAACGTCTCCTTGTTTATGAGTTTCTTGAAAACAAGAGTCTTGACCAAGCATTATTTGGACAAAAACATTTGATTATTGATTGGCCAACACGTTTTGAGATATGCGTGGGTGTAGCAAGGGGCCTCACTTACCTTCATGAGGAATCGAGACTTCGCATAGTGCACAGAGATGTTAAGGCCAGTAACATCCTGCTTGATGGTAATCTGATTCCCAAAATTTCAGATTTTGGCTTAGCCAAACTTTATGATGACAAAAAGACTCATATAAGCACCCGTGTTGCTGGGACAATTGGTTATCTTGCACCTGAGTATGCCATGCGTGGCCACCTTACGGAGAAGGCTGATGTCTTTGGATTTGGCGTTGTGGCTCTTGAAATTGTTAGTGGAAGGCCAAATTCAGACCCAAGCCTAGAGCAAGACAAAGTATATCTTCTCGAATGGGCATGGTACCTCCACGAAAACAACTGTGAACTTGAGATGGTGGATTCTGAATTATCAGAGTTCAGTAAGGAGGAAGTAAAAAGGGTGATCGGTGTAGCTCTTCTGTGTACTCAAACATCTCCAGCTCTTCGGCCATCGATGTCCCGCGTGGTGGCAATGCTGACTGGAGACATTGAAGTGGCCGCTGTAACTTCCAAACCAGGATACCTGACAGATTGGAAATTTGATGACATTACAAGCTTTATCGATACTCCATCAACTGAAGAACCTGATACTGGCCGTTATGCATCAACAAGTTCGAGTATCGTTGATACACATCGCTCACCAGCCAATGCTTCTGAACCAATGCTTCGTGGATTATTAGGAGAGGGTAGGTGA 3228 43.65 MLGTWAGLDYGVLAVGVVVSAWALGRSQPHNLRNWQPAQRQTQEIIRGFIFVLCAIASIVAHLIVLSQAQNSTLPPTDPDQARALNSIFRQWRISAPSGAWNISGNLCSGRAVDTTTPIDSNGNLNPLIKCDCSANNGATCLITQLHVYAINVVGVLPPELWTLTSLTYLKLDQNFLTGTLSASVGNLTELRTLSLGINALSGELPKELGSLSKLEVLAFGSNNFSGPLPSELGNLSMLRELYIDSSGVSGGIPPSFSSLRNLQTVWASDNEFTGRIPDFIGSWTRLTSLRFQGNSFTGPIPSTFSNLTSLTELRIGDLSNGSSSLAFVSNMTSLTILVLRNNNMTGSIPSNIGGFRRLTQLDLSFNNLTGEIPSSLFSLSSLSHLILGNNKLNGTLPTQKSASLLNIDLSYNDLSGSFPAWINEQNLQLNLVANNFTIDSASISGLPSGLNCLQRNFPCNRGRPIYSDFGIKCGGPQIRSSSGILFERENETLGPATYFVTESQRWAVSNTGYFTGTNNPQYTANTLSQFPNTLDTELFQTQRLSASSLRYYGLGLENGNYTVNLHFAELAFPDSNTWQSRGRRLFDIYIQGNRVLQSFDIRKEAGGSFLAVRKNFTAEVTENFLEIHLFWAGKGTCCIPKQGDFGPAVSAISATPDFVPTVSNVPPSTKENRTGLIVGLVVGLGSVFFLIIGAVFLVVQRRKRRRAYEDEELLGIDTRPYTFSFSELRSATNDFNSSNKLGEGGFGPVYKGTLNDGRVVAVKQLSVASHQGKSQFVAEIATISAVQHRNLVKLYGCCIEADKRLLVYEFLENKSLDQALFGQKHLIIDWPTRFEICVGVARGLTYLHEESRLRIVHRDVKASNILLDGNLIPKISDFGLAKLYDDKKTHISTRVAGTIGYLAPEYAMRGHLTEKADVFGFGVVALEIVSGRPNSDPSLEQDKVYLLEWAWYLHENNCELEMVDSELSEFSKEEVKRVIGVALLCTQTSPALRPSMSRVVAMLTGDIEVAAVTSKPGYLTDWKFDDITSFIDTPSTEEPDTGRYASTSSSIVDTHRSPANASEPMLRGLLGEGR 1075
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 1588716 1601817 + CrPI670011_01g002220.1 Cre01g0222 487767
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre01g0222 1075 Gene3D Ribonuclease Inhibitor 323 458 IPR032675 -
Cre01g0222 1075 Gene3D Ribonuclease Inhibitor 100 322 IPR032675 -
Cre01g0222 1075 MobiDBLite consensus disorder prediction 1034 1058 - -
Cre01g0222 1075 Gene3D - 470 657 - -
Cre01g0222 1075 FunFam Putative LRR receptor-like serine/threonine-protein kinase 322 445 - -
Cre01g0222 1075 CDD STKc_IRAK 742 1006 - -
Cre01g0222 1075 Gene3D Transferase(Phosphotransferase) domain 1 812 1015 - -
Cre01g0222 1075 MobiDBLite consensus disorder prediction 1034 1075 - -
Cre01g0222 1075 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN DDB_G0281931-RELATED 61 1030 IPR051824 GO:0005886(PANTHER)
Cre01g0222 1075 Pfam Leucine Rich Repeat 286 308 IPR001611 GO:0005515(InterPro)
Cre01g0222 1075 Pfam Leucine Rich Repeat 214 236 IPR001611 GO:0005515(InterPro)
Cre01g0222 1075 Gene3D Phosphorylase Kinase; domain 1 697 811 - -
Cre01g0222 1075 SMART serkin_6 736 1004 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cre01g0222 1075 FunFam Leucine-rich repeat receptor-like protein kinase 467 657 - -
Cre01g0222 1075 FunFam Leucine-rich repeat receptor-like protein kinase 705 811 - -
Cre01g0222 1075 SUPERFAMILY Protein kinase-like (PK-like) 719 1038 IPR011009 -
Cre01g0222 1075 Pfam Malectin domain 471 653 IPR021720 -
Cre01g0222 1075 Pfam Leucine rich repeat 334 393 IPR001611 GO:0005515(InterPro)
Cre01g0222 1075 FunFam Os05g0263100 protein 82 321 - -
Cre01g0222 1075 FunFam Putative LRR receptor-like serine/threonine-protein kinase 812 1016 - -
Cre01g0222 1075 Pfam Protein tyrosine and serine/threonine kinase 739 1003 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cre01g0222 1075 ProSiteProfiles Protein kinase domain profile. 736 1010 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cre01g0222 1075 ProSitePatterns Serine/Threonine protein kinases active-site signature. 856 868 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cre01g0222 1075 SUPERFAMILY L domain-like 143 448 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre01g0222 Cre-Chr1:1588716 Cre07g1372 Cre-Chr7:28615760 3.50E-149 dispersed
Cre11g0552 Cre-Chr11:2544850 Cre01g0222 Cre-Chr1:1588716 3.00E-22 dispersed
Cre01g0222 Cre-Chr1:1588716 Cre11g2136 Cre-Chr11:33047180 2.00E-136 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
63795 PF07714 PK_Tyr_Ser-Thr 7.40E-46 CL0016 Cre PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre01g0222 - - - 0.0