Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre01g0226 ATGGCCGCGTCAGAGATGATGATGAAAAAGGGTGGTAGTGGACCACCGCCTTGCGCTGCTTGCAAGCTTCTGCGCCGGCGGTGTGCTCCGGACTGCGTTTTTGCTCCCTATTTCCCTTCCGATCAGCCTCACAAATTCTCAAGTGTTCACAAGGTTTTTGGAGCCAGCAATGTCAGCAAATTGTTGCAGGAGTTGCCAGAGCATCAAAGGAGCGATGCTGTGAGTTCAATGGTATACGAGGCAAACGCAAGGATTCGAGATCCAGTATACGGATGCGTGGGAACGATATCGTGTCTACAACGGCAAGTAGATGCATTGCAACAACAACTAGCAATGACACAGGCCCAGCTAGTTCAATTGAAAATGGGCCAATTTACATCAACATCACAAGCATTATCTAGTACGGATGACCTCCTTCCTCCTCCGCCCAATATCAATGTGGGCGCATCACCATCCTTGTGGTCTTGCTAG 471 49.68 MAASEMMMKKGGSGPPPCAACKLLRRRCAPDCVFAPYFPSDQPHKFSSVHKVFGASNVSKLLQELPEHQRSDAVSSMVYEANARIRDPVYGCVGTISCLQRQVDALQQQLAMTQAQLVQLKMGQFTSTSQALSSTDDLLPPPPNINVGASPSLWSC 156
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 1635072 1637294 - CrPI670011_01g002260.1 Cre01g0226 487771
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre01g0226 156 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 17 125 - -
Cre01g0226 156 Coils Coil 96 123 - -
Cre01g0226 156 ProSiteProfiles LOB domain profile. 16 117 IPR004883 -
Cre01g0226 156 Pfam Lateral organ boundaries (LOB) domain 17 114 IPR004883 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre01g0226 Cre-Chr1:1635072 Cre09g1636 Cre-Chr9:33675716 1.20E-42 dispersed
Cre01g0226 Cre-Chr1:1635072 Cre02g2163 Cre-Chr2:35235154 4.40E-45 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
52967 PF03195 LOB 9.80E-44 No_clan Cre TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre01g0226 - - - 0.0