Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre01g0234 ATGTCATCTGGAAGTAGTAGTACTTTGAATACAGAATTGTCAAAGAAAACACCCTTCCTTGGTTTGTCCCTATGGGTTTTGATCTGCTTATGTGTTGGTGCATTTATTGTATTAATTCTCGGTATCTTATCTGTATGGGTGATGTTTAGAAGAAAAACAAGGAGATCCCCAGAAAATTTCTCTATTTCTCAAATACCAAATGTCTCGAAGGATATTAAGGTGGACAGAATCGCGACTCAATCTGCCCACCACAATCATCTCGAGAACCTTTATCTTTCCATTCATGATAAATCAAGTGAGAAGAACTCAGAGAAGATGATTGGTCATTTGGGTATGAGCAAGTCTAGTGATCCTGATAACATAAGCCAATGCAGCTCCAATTATCATCATGAAAGAGTTTTCAGCTCACATTCAGGAGAAGAAGGAAGCTCTGGGACTGTTAGAAAGCAGTCTTCCATGTCATATGGAGGGTATGGAGGCCTTGTGACTGCCTCTCCTCTTGTTGGCCTGCCTGAAATTTCGCATCTTGGTTGGGGTCATTGGTTTACACTCAGGGATCTAGAATTTGCGACAAATCGTTTCGCTGCAGACAATGTGCTTGGGGAAGGGGGTTATGGGGTCGTCTACAAAGGCAGACTGATAAATGGAACTGAGGTTGCAGTGAAGAAACTTCTCAATAATCTGGGACAAGCAGAGAAAGAATTTAGAGTTGAAGTGGAGGCCATTGGTCATGTAAGACACAAGAACCTTGTACGGCTCCTCGGCTATTGCATAGAAGGAGTTCATAGGATGCTGGTCTATGAATATGTGAACAATGGGAACTTAGAGCAATGGTTACATGGGGCTATGCGGCAACATGGCACCCTTACTTGGGAGGCTCGAATGAAGGTGCTTCTTGGCACTGCCAAGGCGCTAGCATATTTACATGAAGCAATTGAACCAAAGGTTGTCCACAGAGACATAAAATCGAGCAACATCTTAATCGATGATGAATTTAATGCAAAGGTTTCAGATTTTGGATTGGCCAAGCTTTTGGATGCAGGAGAGAGTCACATCACGACTAGAGTGATGGGAACATTTGGGTATGTGGCGCCAGAATATGCCAACACTGGCTTGTTAAACGAGAAGAGTGACATTTATAGCTTTGGTGTTCTCCTTCTAGAAGCAATTACGGGAAGGGACCCGGTGGACTATGGTCGTCCTGCTAATGAGGTTAATCTTGTTGAGTGGTTAAAAGTGATGGTTGGCACAAGGAGAGCTGAGGAAGTTATTGACCCAAGTCTTGAAACTAAACCCGCTACACGAGCATTGAAACGTGCCCTTCTGATTGCACTTAGGTGTGTGGATCCTGAGGCAGATAAGAGACCAAAAATGACCCAAGTTGTTAGGATGCTTGAAGCTGATGACTACCCATCACGTGAGGATCGTCGGAGCCAGAAGAGCAGCACAGCAAACTCAGAGATCGAATCCAGTCAAGGCGAGGTTGGAAGTAAACCAGGTGAATCACAAAACAGAACCGTAAATGCATGA 1530 43.86 MSSGSSSTLNTELSKKTPFLGLSLWVLICLCVGAFIVLILGILSVWVMFRRKTRRSPENFSISQIPNVSKDIKVDRIATQSAHHNHLENLYLSIHDKSSEKNSEKMIGHLGMSKSSDPDNISQCSSNYHHERVFSSHSGEEGSSGTVRKQSSMSYGGYGGLVTASPLVGLPEISHLGWGHWFTLRDLEFATNRFAADNVLGEGGYGVVYKGRLINGTEVAVKKLLNNLGQAEKEFRVEVEAIGHVRHKNLVRLLGYCIEGVHRMLVYEYVNNGNLEQWLHGAMRQHGTLTWEARMKVLLGTAKALAYLHEAIEPKVVHRDIKSSNILIDDEFNAKVSDFGLAKLLDAGESHITTRVMGTFGYVAPEYANTGLLNEKSDIYSFGVLLLEAITGRDPVDYGRPANEVNLVEWLKVMVGTRRAEEVIDPSLETKPATRALKRALLIALRCVDPEADKRPKMTQVVRMLEADDYPSREDRRSQKSSTANSEIESSQGEVGSKPGESQNRTVNA 509
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 1727677 1730727 + CrPI670011_01g002340.1 Cre01g0234 487779
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre01g0234 509 ProSitePatterns Serine/Threonine protein kinases active-site signature. 316 328 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cre01g0234 509 CDD STKc_IRAK 200 466 - -
Cre01g0234 509 MobiDBLite consensus disorder prediction 464 509 - -
Cre01g0234 509 Coils Coil 214 234 - -
Cre01g0234 509 FunFam Putative receptor-like serine/threonine-protein kinase 270 480 - -
Cre01g0234 509 Pfam Protein kinase domain 197 463 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cre01g0234 509 MobiDBLite consensus disorder prediction 464 482 - -
Cre01g0234 509 PANTHER OS01G0323000 PROTEIN 7 489 IPR052232 -
Cre01g0234 509 MobiDBLite consensus disorder prediction 483 509 - -
Cre01g0234 509 Gene3D Transferase(Phosphotransferase) domain 1 270 484 - -
Cre01g0234 509 SUPERFAMILY Protein kinase-like (PK-like) 178 471 IPR011009 -
Cre01g0234 509 ProSitePatterns Protein kinases ATP-binding region signature. 200 223 IPR017441 GO:0005524(InterPro)
Cre01g0234 509 Gene3D Phosphorylase Kinase; domain 1 176 269 - -
Cre01g0234 509 ProSiteProfiles Protein kinase domain profile. 194 452 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cre01g0234 509 FunFam Putative receptor-like protein kinase 176 269 - -
Cre01g0234 509 SMART serkin_6 194 465 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre01g0234 Cre-Chr1:1727677 Cre06g1182 Cre-Chr6:5674641 4.30E-150 dispersed
Cre01g0234 Cre-Chr1:1727677 Cre02g2149 Cre-Chr2:35080213 1.70E-202 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
63796 PF00069 Pkinase 6.60E-48 CL0016 Cre PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre01g0234 - - - 0.0