Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cre01g0235 | ATGTCAAATGATGAAGGCAAAAATGTGTACCAGCAGTATGATCCATTCCAATACAACCAGTTGGATATGAACCGTTCGATCTTCCATCAACAAGCGGCGACGTTGGATCCTGCTTTGATGAGCTTCACTAACTTCTTCGATACCTCGTTGGATTACAACAGCCTGTCGAAGGCGTTCGACGTGTCGTGCTGTTCATCCGAAGTCATTTCTGCAGTGGACGACATGTCGAAATCAAAGAAGGCTTCGACGACCACCCCAAATTCTTCAGTGTCGTCTTCGTCTAATGAAGCTGTAGTTGAAGAAGATTCAGTCAAGAGCAACAAAGAGGACATAAAAGGGTGCGAGAATAAAGATGAAGAAAAGTCTAAGAAACAGAACAGCATAACAAAAAAGAAAGAGAAACGGCAGAGGGAGCCCCGTTTTGCTTTCTTGACTAAGAGTGAGATTGATCACCTTGAAGATGGTTATAGATGGAGAAAATATGGTCAGAAAGCAGTTAAAAATAGTCCTTACCCCAGAAGCTACTATAGATGCACCAGCCAAAAATGTGTAGTGAAAAAACGAGTTGAAAGATCATATCAAGATCCATCTGTAGTGATTACTACATATGAAGGCCAACACAACCACCATTGTCCAGCTACACTCCGAGGCCATTCTGCAGGGATCATGTCGTCTCCGTTCTATGCATCAGCATCAACATCGGTAACGGCAGCCTCGTCGGGGCCTACGCTTCCACAAGAACTCTTCTCACATTTGTTACCGACAAATAACTGCCAAACCGACCCAGCCTCGATGATGTACCAAAATCTAAGCCTTCAACAACACCTTCAAATGCCTGATCATTATGGTTTGTTGCAAGATTTGTTCACTCAAAAATAG | 879 | 43.34 | MSNDEGKNVYQQYDPFQYNQLDMNRSIFHQQAATLDPALMSFTNFFDTSLDYNSLSKAFDVSCCSSEVISAVDDMSKSKKASTTTPNSSVSSSSNEAVVEEDSVKSNKEDIKGCENKDEEKSKKQNSITKKKEKRQREPRFAFLTKSEIDHLEDGYRWRKYGQKAVKNSPYPRSYYRCTSQKCVVKKRVERSYQDPSVVITTYEGQHNHHCPATLRGHSAGIMSSPFYASASTSVTAASSGPTLPQELFSHLLPTNNCQTDPASMMYQNLSLQQHLQMPDHYGLLQDLFTQK | 292 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
1 | 1736481 | 1738321 | - | CrPI670011_01g002350.1 | Cre01g0235 | 487780 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cre01g0235 | 292 | MobiDBLite | consensus disorder prediction | 75 | 139 | - | - | |
Cre01g0235 | 292 | MobiDBLite | consensus disorder prediction | 101 | 139 | - | - | |
Cre01g0235 | 292 | Pfam | WRKY DNA -binding domain | 153 | 210 | IPR003657 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
Cre01g0235 | 292 | SUPERFAMILY | WRKY DNA-binding domain | 145 | 212 | IPR036576 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
Cre01g0235 | 292 | MobiDBLite | consensus disorder prediction | 75 | 100 | - | - | |
Cre01g0235 | 292 | FunFam | WRKY transcription factor 57 | 138 | 212 | - | - | |
Cre01g0235 | 292 | SMART | WRKY_cls | 152 | 211 | IPR003657 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
Cre01g0235 | 292 | Gene3D | WRKY domain | 136 | 213 | IPR036576 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
Cre01g0235 | 292 | ProSiteProfiles | WRKY domain profile. | 147 | 212 | IPR003657 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
Cre01g0235 | 292 | PANTHER | WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED | 63 | 220 | IPR044810 | GO:0003700(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cre01g0235 | Cre-Chr1:1736481 | Cre04g2045 | Cre-Chr4:37696344 | 5.50E-41 | dispersed | |
Cre01g0235 | Cre-Chr1:1736481 | Cre02g2148 | Cre-Chr2:35073683 | 3.00E-47 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
52969 | PF03106 | WRKY | 5.40E-25 | CL0274 | Cre | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cre01g0235 | - | - | - | 0.0 |