Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre01g0247 ATGCAGACCGATCACCGTAAGAAGAATTCTGCAGAATTGGACTTTTTCTCTGAATACGGCGATGCCAACAGATTCAAAGTTCGCGAAGTTATTGGAAAGGGGAGTTATGGTGTGGTTTGTTCAGCTGTTGACACTCTCACTAATGAAAAAGTGGCAATAAAGAAGATACACGATATTTTTGAACATGTATCTGATGCTGCCCGTATTCTTCGTGAGATAAAGCTGCTCAGGCTTCTACGTCATCCTGATATTGTTGAAATTAAACACATTATGTTACCACCTTCTCGTAGGGGGTTCAAAGATATTTTTGTTGTGTTTGAGTTGATGGAATCAGATTTGCATCAAGTCATCAAGGCCAACGATGATTTAACAAAAGAGCACTATCAATTTTTCCTTTATCAGCTACTCCGTGCGCTGAAATATATTCACACAGCAAATGTCTACCATCGGGATTTAAAACCAAAGAATATATTGGCAAATGCAAATTGCAAACTCAAAATCTGTGATTTTGGATTGGCTAGAGTTGCTTTTAGTGACACCCCAACTACAATATTTTGGACGGACTATGTTGCTACTAGATGGTATAGGGCTCCAGAGCTATGTGGTTCTTTCTTCTCTAAGTATACTCCTGCCATTGACATTTGGAGTATTGGCTGCATATTTGCTGAAGTACTGACCGGGAAACCACTTTTTCCTGGTAAAAATATTGTTCATCAGCTTGATTTGATGACAGATCTCCTTGGAACACCGTCATTGGATACCATTTCTCGGGTAAGAAATGAAAAGGCCAGGAGGTACTTAACTAGTATGAGGAAGAAGCAGCCCATACCCTTTTCTCAGAAGTTCCCTAATGCTGATCCTCTAGCCCTGCAATTGCTACAACGATTGCTTGCATTTGATCCAAAGGATCGACCTACTGCTGAAGAGGCTTTGGCAGATCCTTACTTTAAGGGGCTGGCAAAAGTTGAGAGGGAACCTTCTTGCCAGCCAATCTCAAAGGTGGAGTTTGAATTTGAAAGGAGAAAGGTCACAAAGGATGACATTCGCGAGCTAATATTCCTTGAGATACTAGAATACCATCCTCAACTGCTAAAAGACTACTTAAATGGAACTGAGAGATCAAATTTTCTTTATCCAAGTGCACTAGATCAGTTCAAAAAGCAATTTGCTCATCTTGAAGATAATGGAGGGAAAAGTGGACCAGTTTATCCTTTAGAAAGAAAACATGCATCTCTTCCTAGGTCTTCAGTACAGTCAAATACCATTCCTCCTAAAGCTACATCAAATATTGTTTCCTTTAAAGACCGATATGCGCCAGCGGGTTCGTTCAGCAGTCAGCATTTCAGAGATCCAGCAGCGCAGAGGATTGCTGATGCTCAAGCCAAGCCTGGAAGAATCTCAGGCCCGGTCGTGCCATATGACAGTGGAAGTATTGTTAAAGATGCCTACGACCCGAGAATGTTAATTAGAAGTGCCCTCCCTTCTCATGCTATCCATCCAACATATTATTATCAGCAATCTTGCGGCCAAAATGAAGAAAGATCAGCAACGGGGGCTGAACAGGACACATCCTTGCAATGTAAACAATCCCCTCAATGTGGAATGGCTGCCAAATTAGCAGGAGATACAGCTGCTACTGGTGCTTTCTCAAATCCTTTCTTTATGGCGCGTGTAGGCATGCCCAAGATCGGAAACAATGACCGTGCTGCACGTTTGCAGGTAAGCGCTCAATATGATGCTGGAGCTGTTGCTGCTGCAACTACCACCACCCATCGAAACGCTGGCACGGTCGAAATTCAGACTTTGAAACTCACTATCATCAAATTGGCCATTGAAGAGGAAGCTGAGCTTATTGATGGATAG 1863 42.35 MQTDHRKKNSAELDFFSEYGDANRFKVREVIGKGSYGVVCSAVDTLTNEKVAIKKIHDIFEHVSDAARILREIKLLRLLRHPDIVEIKHIMLPPSRRGFKDIFVVFELMESDLHQVIKANDDLTKEHYQFFLYQLLRALKYIHTANVYHRDLKPKNILANANCKLKICDFGLARVAFSDTPTTIFWTDYVATRWYRAPELCGSFFSKYTPAIDIWSIGCIFAEVLTGKPLFPGKNIVHQLDLMTDLLGTPSLDTISRVRNEKARRYLTSMRKKQPIPFSQKFPNADPLALQLLQRLLAFDPKDRPTAEEALADPYFKGLAKVEREPSCQPISKVEFEFERRKVTKDDIRELIFLEILEYHPQLLKDYLNGTERSNFLYPSALDQFKKQFAHLEDNGGKSGPVYPLERKHASLPRSSVQSNTIPPKATSNIVSFKDRYAPAGSFSSQHFRDPAAQRIADAQAKPGRISGPVVPYDSGSIVKDAYDPRMLIRSALPSHAIHPTYYYQQSCGQNEERSATGAEQDTSLQCKQSPQCGMAAKLAGDTAATGAFSNPFFMARVGMPKIGNNDRAARLQVSAQYDAGAVAAATTTTHRNAGTVEIQTLKLTIIKLAIEEEAELIDG 620
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 1812366 1816376 + CrPI670011_01g002470.1 Cre01g0247 487792
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre01g0247 620 ProSitePatterns Protein kinases ATP-binding region signature. 31 55 IPR017441 GO:0005524(InterPro)
Cre01g0247 620 ProSiteProfiles Protein kinase domain profile. 25 316 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cre01g0247 620 SUPERFAMILY Protein kinase-like (PK-like) 22 320 IPR011009 -
Cre01g0247 620 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE 24 355 IPR050117 GO:0004674(PANTHER)|GO:0004707(PANTHER)|GO:0005634(PANTHER)|GO:0005737(PANTHER)|GO:0035556(PANTHER)
Cre01g0247 620 Pfam Protein kinase domain 26 316 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cre01g0247 620 Gene3D Phosphorylase Kinase; domain 1 40 362 - -
Cre01g0247 620 FunFam Mitogen-activated protein kinase 17 118 - -
Cre01g0247 620 Gene3D Transferase(Phosphotransferase) domain 1 111 339 - -
Cre01g0247 620 FunFam Mitogen-activated protein kinase 111 339 - -
Cre01g0247 620 ProSitePatterns MAP kinase signature. 60 163 IPR003527 GO:0004707(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cre01g0247 620 SMART serkin_6 25 316 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cre01g0247 620 CDD STKc_TDY_MAPK 24 361 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre01g0247 Cre-Chr1:1812366 Cre06g1328 Cre-Chr6:7231211 3.00E-206 dispersed
Cre01g0247 Cre-Chr1:1812366 Cre02g2146 Cre-Chr2:35036044 1.00E-249 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
63797 PF00069 Pkinase 1.00E-66 CL0016 Cre PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre01g0247 - - - 0.0