Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cre01g0252 | ATGCTCTCTTTTTTAGCTGCAATGCTAATAATATCCATTGTTCTAGTCTTGAGGAGCAATAAGAGAAGCAAAAATATACCACCTGGGCAAATGGGTCTTCCTTGGATTGGCGAAACAATGGCTTTTTACAAAGCCCAACGTAAAAACAGAGTATTTGAAGACTTTGTTAGGCCTCGAGTGGCTAAACATGGCAAAATCTTCAAAACAAGCTTAATGGGATCTCCAACAGTGGTTGTAAATGGAGCTGAAGCCAATCGATTTTTCTTGTCAAATGAGTTTAAGTTAGTGGTGAGTGCATGGCCATCGGGTTCTGTTCAGTTGATGGGTGAAGAATGCATTATGCAAAAGCAAGGTGAAAGGCACAGAATTGTGCGTGCTCTTATTGCTGCAAGTCTTTCTAGTTCGAGTCTTGAAGTTATGATGCCTAAATTGTGCAAGACAATTAAGGTTTATTTGGACACTAAATGGGTTGGTTGTGACACAATTGGTCTATTCCATTCGGCAAAAGTATTGACTTTTACCATAGTGTTTGAGTGTTTGATGGGTATTAAAGTGGAGCCACGTGTGTTGATGACATTCGAGAGAGTTTTGGAGGGTGTTTTTGCACCACCGTTCAGGTTTCCAGGCACAAGGTTTTCAAGAGCCAAGAAAGCAAGGTTGGAGATAGAGAAAATGCTAAGGGAAGTGGTGAGAGAGAAGAGGAGGGGAATTGAAGGAAAGTTAGAAGAAGAAGAAGAAGAAGAAGAAGAATGTGGGTCATTGCTTTCAAGGATGGTGAGAGCAATGATAAGAGGGGAGATCAATGAAACGGAAGTCATAGACAATGTGGTTTTGCTTGTTTTTGCAGCTCATGATACAACTTCCTTTGCCATTGCCATGACTTTCAAGATGTTAGCTCAACATTCAAACTGCTACTCACTTCTTCTCCAGGAACACACTGACATAGTGAGAAGCAAGGGGCCAAGCCAGAATTTGACGATGGAAGATATAAAGAAGATGAAATATACTTGGCAAGTAGCTCGTGAGAGCATTAGACTGTTTCCTCCTATATTTGGTTCTTTCAGGAAAGCCATTTCAGACATTGAATATGAGAGATTTTTCATTCCCAAAGGATGGAAGGTATTGTGGACGACGTATGGAACACATTACGAAGAAGAGTACTTTGAAGATCCATTGAGTTTCAAGCCAAGCAGATTTGAGGAACCTGTTTCTCAGTATGTTTATGTTCCATTTGGAGGAGGGCCAAGAGCTTGTGCAGGCTACCAGCTGGCGAAATTGAACATCCTCATCTTTATACATTTGGTTGTAACTCGTTATGATTGGAGTTTAGTCCATCCAGATGAGCCAATCATAATGGATCCTCTCCCTGTCCCTTCTCATGGAATGCCAATTAAGATTTCTCCAAAATCAGAAGTTTGTCCCAATGTTCACCAAATGTAA | 1440 | 40.83 | MLSFLAAMLIISIVLVLRSNKRSKNIPPGQMGLPWIGETMAFYKAQRKNRVFEDFVRPRVAKHGKIFKTSLMGSPTVVVNGAEANRFFLSNEFKLVVSAWPSGSVQLMGEECIMQKQGERHRIVRALIAASLSSSSLEVMMPKLCKTIKVYLDTKWVGCDTIGLFHSAKVLTFTIVFECLMGIKVEPRVLMTFERVLEGVFAPPFRFPGTRFSRAKKARLEIEKMLREVVREKRRGIEGKLEEEEEEEEECGSLLSRMVRAMIRGEINETEVIDNVVLLVFAAHDTTSFAIAMTFKMLAQHSNCYSLLLQEHTDIVRSKGPSQNLTMEDIKKMKYTWQVARESIRLFPPIFGSFRKAISDIEYERFFIPKGWKVLWTTYGTHYEEEYFEDPLSFKPSRFEEPVSQYVYVPFGGGPRACAGYQLAKLNILIFIHLVVTRYDWSLVHPDEPIIMDPLPVPSHGMPIKISPKSEVCPNVHQM | 479 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 1 | 1854586 | 1856838 | - | CrPI670011_01g002520.1 | Cre01g0252 | 487797 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cre01g0252 | 479 | SUPERFAMILY | Cytochrome P450 | 20 | 468 | IPR036396 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Cre01g0252 | 479 | Gene3D | Cytochrome P450 | 16 | 469 | IPR036396 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Cre01g0252 | 479 | Pfam | Cytochrome P450 | 27 | 455 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Cre01g0252 | 479 | ProSitePatterns | Cytochrome P450 cysteine heme-iron ligand signature. | 411 | 420 | IPR017972 | GO:0005506(InterPro)|GO:0016705(InterPro) | |
| Cre01g0252 | 479 | PRINTS | E-class P450 group I signature | 418 | 441 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Cre01g0252 | 479 | PRINTS | E-class P450 group I signature | 408 | 418 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Cre01g0252 | 479 | PRINTS | E-class P450 group I signature | 271 | 288 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Cre01g0252 | 479 | PRINTS | E-class P450 group I signature | 377 | 401 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Cre01g0252 | 479 | PRINTS | E-class P450 group I signature | 60 | 79 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Cre01g0252 | 479 | FunFam | Taxadiene 5-alpha hydroxylase | 17 | 469 | - | - | |
| Cre01g0252 | 479 | PRINTS | P450 superfamily signature | 282 | 299 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Cre01g0252 | 479 | PRINTS | P450 superfamily signature | 338 | 349 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Cre01g0252 | 479 | PRINTS | P450 superfamily signature | 418 | 429 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Cre01g0252 | 479 | PRINTS | P450 superfamily signature | 409 | 418 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Cre01g0252 | 479 | PANTHER | CYTOCHROME P450 26 | 25 | 447 | - | GO:0004497(PANTHER)|GO:0005783(PANTHER)|GO:0016125(PANTHER)|GO:0016491(PANTHER)|GO:0051777(PANTHER) | |
| Cre01g0252 | 479 | CDD | CYP90-like | 59 | 468 | - | - | |
| Cre01g0252 | 479 | Coils | Coil | 215 | 247 | - | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cre01g0252 | Cre-Chr1:1854586 | Cre05g1586 | Cre-Chr5:24790742 | 8.70E-84 | dispersed | |
| Cre01g0252 | Cre-Chr1:1854586 | Cre05g2177 | Cre-Chr5:33509965 | 1.80E-57 | transposed |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cre01g0252 | - | - | - | 0.0 |