Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre01g0259 ATGACAGCCATTGCAGTTCACCAGTTTGCTCAGTGCATCACTTGCCATGCTTGGAGCCCTGACCACTCCATGGTTGCATTTTGTCCAAACAATAATGAAGTTCACATTTATAAATCATCACAAGACAACTGGGAGAGAATACATGTTCTTCAAAAGCATGATCAGCTTATCTCTGGGATAGACTGGAGTGTTAGGTCAAACAGAATAGTGACTGCATCTCATGATCGGAATTCGTATGTTTGGAACCTTGAAGGATCGGAGTGGGTACCAACTCTTGTCATTCTTAGACTAAACCGTGCTGCACTCTGTGTTCAGTGGAGTCCAAAAGAAAACAAGTTTGCTGTTGGGAGTGGGGCAAAAACTGTTTGCATCTGCTACTATGAACAAGAGAACAATTGGTGGGTCAGTAAGCTTATCAGAAAAAGACATGATTCTTCTGTGACAAATGTTGCTTGGCATCCCAATAATCTGCTTCTTGCAACAACCTCAACGGATGGAAAATGTCGAATCTTTTCCACCTTCATTAAAGGTGTTGACACAAAGGATTCAAGAGCTGGCGCATTTTCGGATTCAAAATTTGGAGAGTTAATTGTTCAGCTTGATCTCTCATTCTCTTGGGCATTTGGCGTAAAGTGGTCACCAAGTGGCAATACCTTAGCTTATGCAGGTCACAATTCAATGATTTACTTCGTAGATGAAGTTGGTCCTTCTCCTCTAGCCCAGAATGTTGCATTCCGAGATTTGCCTCTTCGTGATATACTATTTGTTTCTGAGAGAATGGTTATAGGTGTAGGATTTGATTGCAATCCTATGGCTTTTGCTGCTGATGAAAGAGGGATCTGGAGCTTTGTAAGATTTCTTGGTGAGAGGAAAACAGCGTCAGGTTCAAAATATGGATCCCAGTTTTCAGAAGCATTTGGGAAGTTATATGGTCAACCAAGGCAAGGCGTTGGAAATGATTCAGTTGAATCTTCAAGATTGCGCGGATGTGTCCATGAGAATTGTATAAGTTGTATTGTGCCTCTTAAAGAGCCGGGGGTTTCCACTATAAAGCGGTTCAGCACTTCAGGTTTGGATGGAAAAGTGAATCTTGCTCTTGGAACTTGGCACTTGGCACAGGCACAGTCACGTGCTTTGTATATTATAGCAGCTGCTTCTTCCTTCAGTTTTCTCTGTGCTCTGTACTCAGCGGCGAATATGCTATCCACACTGCAACCCCCTCGCTGCTCTCTTTCTCGCTTCCCTCTCCATCTTCCCTCCAAACCATTCTTCTTTCACTCCAAACAAACCCAACTTTCATCTTCACATCCCATTCCCAATTCCACTCTCACAGACCAATTTCCCACTTCCATTTCTTCCCAATCCCTTCACTCCCAAATTCTCTCCATCCGCCATTCCCTCCTTTCCCGCCAAATCACTGCCACCCAACTCGCCGAGTCCTATCTCAGTCGCCTCCGAGCTTTGGAGCCTCACCTCAAGTCATTTCTCTACGTCTCTGACACCGTCCTCTCTGATGCCCGTGAGATTGATGACAAAATTCACAGAAATGAGGAACTGGGTCCTTTGGCTGGGGTGCTTGTGGGCGTTAAGGACAATATTTGTACTGCGGGTATGCCTTCCACTGGTGGGTCTCGGATTCTTGATGGGTATCGGCCACCATTTGATGCTACGGCTGTGAAGAGAATCAAGGAGTTGGGTGGGATTGTGGTTGGGAAGACTAATTTGGATGAATTTGGCATGGGTAGTTCTACTGAAGGCTCTGCTTTCCAGGTGACTGCAAATCCGTGGGATTTGAGTAGAGTACCGGGAGGATCATCAGGAGGGTCTGCTTCAGCTGTTTCTGCTAGGCAGTGTGTGGTGTCATTGGGAAGTGATACAGGTGGAAGTGTGCGGCAGCCAGCATCTTTTTGTGGTGTTGTTGGCTTGAAACCAACCTATGGTCGTGTCTCAAGATTTGGACTTATGGCCTATGCTTCATCGCTTGATGTTATTGGCTGCTTGAGTACAACAGTTGCTGATGCTGGGATTCTTCTACATGCAATCTCTGGTCACGATACACTTGATGCCACTAGTAGTAAACGAGAGGTTCCTGATTTCACATCGCAATTTTCTGCTGTTGATTCATTGGAGTCTAAACCCTTAAAAGGATTGAGGATTGGCCTAATTCGTGAAACCCTTGATAATGGCGTTGATGGTCAAGTAAATTCTGCTATCCGTGCTGCTGCTTCACATCTAGAAGAACTAGGATGTTCCATAAATGAGGTATCACTGCCATCATTCTCTCTTGGGTTGCCTGCGTATTATATTCTTGCATCATCTGAATCATCTTCAAACTTAGCTCGATATGATGGTGTCAGATATGGAAATCAAGCTGTTGCTGATGAGTTAACTGGTCTTTATGAAAATTCCCGAGCAGCAGGATTTGGTTCAGAGGTTAAAATGAGAATTTTGATGGGAACATATGCTCTCTCAGCTGGTTATTATGATGCTTACTACAAGCGTGCTCAGCAGGTGAGAACCATTATTCAGAAAAGCTTCAGAGCAGCATTAGATGAAAATGACATCTTAATATCACCTGCTGCTCCATCTGCCGCTTATAAAATTGGTGAAAAGGTGGACGATCCATTGGCAATGTATGCAGGTGACATCATGACTGTCAATGTTAACTTAGCTGGACTACCTGCATTGGTTTTGCCTTGTGGATTTGTTCAAGATGGGTCCTCTAACCTTCCTGTTGGCCTTCAAATGATTGGTGCAGCTTTTGATGAGGGTAAACTTCTTAAAGTGGGACACATCTTTGAGCAAACTCTTGCAGACTGCAGATTTGTTCCACCCGTCCTAGCCGATGACATTGTAGCTTGCAAAGCGGTGGTGGGGAACCTGCCAAATCCTCCATTGCCTACTTTGAGTCTACAAGATCGCTGTCCCTTTGGAATCTCGGTCAATTCATTGTTCCGATCTATTCCATCTGTTCACCGACGGATCTCCGGTCGTTCTGTACTTCTCCGACAGCAGATATTGAAAAAGATGTCGGGCCAAAGCCAGCGTTTGAATGTGGTTCCGACAGTTACAATGCTTGGAGCGATGAAAGCTCGTCTTGTTGGTGCAACCAGAGGTCATGCTCTTCTCAAAAAGAAGAGTGATGCTTTGACCGTTCAGTTCCGTCAGATACTCAAGAAGATTGTCACAGCTAAGGAATCAATGGGGGATGTCATGAAGACATCTGCATTTTCTCTCACCGAAGCAAAATATGTTGCTGGTGACAATATCAAGCATATTGTCCTTGAGAATGTCCAAAGTGCAGCTATCAAGATTCGATCTCGGCAGGAGAATATTGCTGGTGTAAAGCTCCCAAAATTTGAACATTATTCTGATGGTGAGACTAAAAATGATCTCACAGGGTTAGCCAGGGGTGGACAACAGATCCAGCTGTGTCGGGGCGCCTATGTAAAGGCAATTGAGGTTCTTGTTGAGCTTGCCTCACTCCAGACGTCATTTTTGACTCTTGATGAAGCAATTAAAACCACAAACCGCAGGGTCAACGCTCTAGAGAATGTTGTGAAGCCAAGGATCGAGAATACTATAAGTTACATTAAGGGAGAATTGGACGAGCTGGAAAGGGAAGATTTCTTTAGACTGAAAAAGATTCAGGGTTATAAGAGAAGGGAAATTGAGAAACAACTTCAGCTCACAATTTATTGTCTGCAGCTGCTGAGAAGGATGAGGATATTATTTTCTGATTTTAAGGGTGAAAGGAGGGAGCAACCGGAGGATACCAAATAG 3783 44.33 MTAIAVHQFAQCITCHAWSPDHSMVAFCPNNNEVHIYKSSQDNWERIHVLQKHDQLISGIDWSVRSNRIVTASHDRNSYVWNLEGSEWVPTLVILRLNRAALCVQWSPKENKFAVGSGAKTVCICYYEQENNWWVSKLIRKRHDSSVTNVAWHPNNLLLATTSTDGKCRIFSTFIKGVDTKDSRAGAFSDSKFGELIVQLDLSFSWAFGVKWSPSGNTLAYAGHNSMIYFVDEVGPSPLAQNVAFRDLPLRDILFVSERMVIGVGFDCNPMAFAADERGIWSFVRFLGERKTASGSKYGSQFSEAFGKLYGQPRQGVGNDSVESSRLRGCVHENCISCIVPLKEPGVSTIKRFSTSGLDGKVNLALGTWHLAQAQSRALYIIAAASSFSFLCALYSAANMLSTLQPPRCSLSRFPLHLPSKPFFFHSKQTQLSSSHPIPNSTLTDQFPTSISSQSLHSQILSIRHSLLSRQITATQLAESYLSRLRALEPHLKSFLYVSDTVLSDAREIDDKIHRNEELGPLAGVLVGVKDNICTAGMPSTGGSRILDGYRPPFDATAVKRIKELGGIVVGKTNLDEFGMGSSTEGSAFQVTANPWDLSRVPGGSSGGSASAVSARQCVVSLGSDTGGSVRQPASFCGVVGLKPTYGRVSRFGLMAYASSLDVIGCLSTTVADAGILLHAISGHDTLDATSSKREVPDFTSQFSAVDSLESKPLKGLRIGLIRETLDNGVDGQVNSAIRAAASHLEELGCSINEVSLPSFSLGLPAYYILASSESSSNLARYDGVRYGNQAVADELTGLYENSRAAGFGSEVKMRILMGTYALSAGYYDAYYKRAQQVRTIIQKSFRAALDENDILISPAAPSAAYKIGEKVDDPLAMYAGDIMTVNVNLAGLPALVLPCGFVQDGSSNLPVGLQMIGAAFDEGKLLKVGHIFEQTLADCRFVPPVLADDIVACKAVVGNLPNPPLPTLSLQDRCPFGISVNSLFRSIPSVHRRISGRSVLLRQQILKKMSGQSQRLNVVPTVTMLGAMKARLVGATRGHALLKKKSDALTVQFRQILKKIVTAKESMGDVMKTSAFSLTEAKYVAGDNIKHIVLENVQSAAIKIRSRQENIAGVKLPKFEHYSDGETKNDLTGLARGGQQIQLCRGAYVKAIEVLVELASLQTSFLTLDEAIKTTNRRVNALENVVKPRIENTISYIKGELDELEREDFFRLKKIQGYKRREIEKQLQLTIYCLQLLRRMRILFSDFKGERREQPEDTK 1260
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 1915910 1932849 - CrPI670011_01g002590.1 Cre01g0259 487804
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre01g0259 1260 FunFam V-type proton ATPase subunit D 1010 1207 - -
Cre01g0259 1260 SUPERFAMILY WD40 repeat-like 11 268 IPR036322 GO:0005515(InterPro)
Cre01g0259 1260 PANTHER TRANSAMIDASE 444 936 IPR000120 GO:0003824(InterPro)
Cre01g0259 1260 ProSitePatterns Amidases signature. 603 634 IPR020556 -
Cre01g0259 1260 Gene3D Amidase signature (AS) domain 456 940 IPR036928 -
Cre01g0259 1260 Gene3D - 1009 1207 - -
Cre01g0259 1260 FunFam Actin-related protein 2/3 complex subunit 4 376 - -
Cre01g0259 1260 Pfam Amidase 477 927 IPR023631 -
Cre01g0259 1260 ProSitePatterns Trp-Asp (WD) repeats signature. 69 83 IPR019775 -
Cre01g0259 1260 SUPERFAMILY Amidase signature (AS) enzymes 459 944 IPR036928 -
Cre01g0259 1260 Hamap Glutamyl-tRNA(Gln) amidotransferase subunit A [gatA]. 463 938 IPR004412 GO:0006412(InterPro)|GO:0030956(InterPro)|GO:0050567(InterPro)
Cre01g0259 1260 Gene3D - 4 381 IPR015943 GO:0005515(InterPro)
Cre01g0259 1260 ProSiteProfiles Trp-Asp (WD) repeats profile. 50 91 IPR001680 GO:0005515(InterPro)
Cre01g0259 1260 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 50 84 - -
Cre01g0259 1260 SMART WD40_4 87 126 IPR001680 GO:0005515(InterPro)
Cre01g0259 1260 SMART WD40_4 43 82 IPR001680 GO:0005515(InterPro)
Cre01g0259 1260 SMART WD40_4 2 38 IPR001680 GO:0005515(InterPro)
Cre01g0259 1260 SMART WD40_4 132 172 IPR001680 GO:0005515(InterPro)
Cre01g0259 1260 SMART WD40_4 193 232 IPR001680 GO:0005515(InterPro)
Cre01g0259 1260 ProSiteProfiles Trp-Asp (WD) repeats profile. 140 172 IPR001680 GO:0005515(InterPro)
Cre01g0259 1260 Pfam ATP synthase subunit D 1026 1217 IPR002699 GO:0046961(InterPro)
Cre01g0259 1260 NCBIfam V-type ATP synthase subunit D 1018 1220 IPR002699 GO:0046961(InterPro)
Cre01g0259 1260 NCBIfam Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatA 465 937 IPR004412 GO:0006412(InterPro)|GO:0030956(InterPro)|GO:0050567(InterPro)
Cre01g0259 1260 Pfam WD domain, G-beta repeat 141 171 IPR001680 GO:0005515(InterPro)
Cre01g0259 1260 Pfam WD domain, G-beta repeat 45 82 IPR001680 GO:0005515(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre01g0259 Cre-Chr1:1915910 Cre04g0291 Cre-Chr4:8062817 7.40E-42 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre01g0259 K02433 - csv:101212627 997.267