Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre01g0260 ATGGCGGCCAAATCTGTATCTCAAAATCGAATCAGAGCCAAACTCCATTTCTTCTATGCAATTCTTCTGCTGCAGCTTGCTACCTTCGGATTGGCAGCCACAGCCAAGCTTCATCCAGAAGAAGTGAAAGCTTTGAAAGAGATCGAGAAGAAGATAGGGAAAAACGATTGGAATTTTAGCGTAGATCCTTGCAGTGGAGAAGGAAAATGGCGAGTCGTTAATGGAAGAAAAGGATTCGAAAGCTCCGTCACCTGTGATTGCTCTTTCAACCACAACTCCACTTGCCGTATCGTCGCCATAGCTCTGAAGTCCCAGAATCTATCAGGCATTGTGCCACCAGAGTTTTCCAAGCTTCGCTTCCTCAAACAGCTAGACCTCAGTCGAAACTGTCTCACTGGTTCTATTCCTTCACAATGGGCTACCATGCGATTGGTAGAACTCTCTTTCATGGGAAACAAATTGTCTGGCCCATTCCCGAAAGTTCTTACTAATATCACCACCCTCAGAAACCTGAGCATCGAAGGAAATCAATTTTCCGGCCGAATTCCGCCAGAGGTCCGAAAACTAGTTAGTTTGGAAAAATTAGTTCTGTCATCAAATGGCCTCACCGGAGAATTGCCTAAAGCACTAGCGAAATTGTCGAACTTAACTGATGTGAGGATAAGTGACAACAACTTCTCTGGAAAGATACCTGAGTTCATTAGTAATTGGGCACAGATTGAAAAACTGCATATACAAGGCTGCTCCCTCGAGGGGCCTATACCCTTAAGTATCTCCACCATGACAAGTTTAACTGATCTGAGAATATCCGACTTAAAAGGTGGAAGGTCTCCTTTTCCGTCGTTGAGCAAAATGAAATCCCTGAAGACTCTGATACTGAGGAAGTGCTTAATTTTTGGAGAAGTCCCGAAATACATCGGGGACATGAAAAAATTGAAAAACTTAGACCTCAGTTACAATGACTTGACTGGCGAAGTTCCTGCATCTTTAGAACGACTGGAAAAAATAGATTACATAATTTTGACAGGAAACAAGCTCAATGGAATTATTCCTGGTTGGATTTTAGGAAGCAACAAGAACGTAGATCTTTCTAATAACAACTTCACTTGGGAAAACTCAAGCCCAGCTGAGTGTCCTCGTGGTAGTGTAACTAGAATCCATCCCTGCCTAAAAAGGAACTTTCCGTGTTCTGCATCAAGGGAACAGCATCACTACTCATTGCACATTAACTGTGGCGATAAAGAAGCATTTGTAAGGGGTGAAAGGTATGAAGCGGATAGAGAAGGTGCTTCAATGTTTTATACTGGTCAGAATTGGGCTTTTAGCAGCACGGGAAGCTTTATGGACAATGATGTTGATGCTGATAACTACATCATAACAAATACATCTGCTCTTTCAAATGTCTCTGTGACTGATTCAGAACTGTACACAAAAGCAAGAAACTCTCCTCAATCTCTTACATACTATGGGCTATGTCTCATAAATGGGAATTATACTGTTAAACTCCACTTTGCAGAGATTGTATTTATAAATGACAGTTCATTCAACAGCCTGGGGAGGCGAGTTTTTGATGTGTACATTCAGGAAAAGCTAGTCCTGAAAGATTTTGATATAGAACATGAAGCAGGGGGTACTGGTAAGCCCATTATGAAAACATTTACTGCAGTTGTCACAAGTCATACATTGAAAATCCATTTCTACTGGGCTGGAAGAGGAACAACAGGAATTCCACTTAGAGGAAATTATGGTCCTCTGATATCAGCTATTTCTGTAGATCCCAATTTTACACCTCCTAAGAACCACGTGAAGAAGCATCACACCATCATAATTATTGGGACAGCAGCAGCAGCTTTTGTTCTCCTTCTTCTGGTGTTATGCATTATGAGGCGGAACGGATGGCTGGGAGGCAAGGCATCCGTATATAAAGAGCTTAGAGGTATAGATCTGCAAACAGGATTATTTACAATAAGACAGATTAAAGCAGCCACTAAAAATTTTGATGCTGCGAACAAAGTTGGGGAAGGTGGTTTTGGTGCAGTTTACAAGGGTCTCTTGTCAGATGGTACTATAATTGCCGTCAAGCAGCTCTCGTCAAAATCAAAGCAAGGAAATCGAGAATTTGTTAATGAAATAGGCATGATATCCGCACTGCAACATCCAAATCTTGTCAAGCTTTATGGATGTTGTGTTGATGGGAACCAACTAATGTTGATTTATGAATACATGGAAAATAATTGCTTATCACGTGCCCTTTTCAGAAATGACCCAGCTTCTAAATTGAGATTGGACTGGCCCACCAGGCAGAAAATTTGTCTGGGAATAGCTAGAGGTTTGGCCTATCTGCATGAGGAGTCAAGACTAAAAATCGTACATAGGGATATCAAGACAAGTAATGTATTGCTTGATAAGGATTTCAATGCTAAAATTTCTGATTTTGGCTTGGCTAAGCTTCATGAAGATGACAATACCCATATCAGCACTAGGGTTGCTGGAACCATTGGTTATATGGCTCCTGAATATGCAATGCGTGGATGCTTGACCTGCAAAGCTGATGTTTATAGCTTTGGAGTTGTTGCCCTGGAAATTGTCAGTGGCAAAAGCAATACCAACTACAGGCCTAAAGAGGAATTTGTTTACCTTCTTGATTGGGCATCTGTTCTGCAAGAAAAGGGAAGCCTATTGGAGTTGGTGGATCCAGCCTTGGGCTCAGATTATTCATCAGAAGAAGCAATGGTGATGCTGAATGTGGCTCTCCTCTGCACCAACGCATCACCAACTCTGCGGCCTCTAATGTCCCAAGTCGTCAGCATGCTCGAAGGTCGAACTCCGGTGCAAGCACTTCTTTCTGACCCAGGATTTTCAGCCATCAATTCCAAATTAAAGGCTCTCAGAAATCACTTTTGGCAACAATTGAGCCCAACTCACAGTTTATCATTGGACGATTTCCCTAGTGATTCCTTGAGTTCGAATGTGGACCCGGAGGCAGAAGAGAATTACAATCTTGTAAGACCCCATTCTGTTAACATGACTGGAACAAATTAG 3042 42.04 MAAKSVSQNRIRAKLHFFYAILLLQLATFGLAATAKLHPEEVKALKEIEKKIGKNDWNFSVDPCSGEGKWRVVNGRKGFESSVTCDCSFNHNSTCRIVAIALKSQNLSGIVPPEFSKLRFLKQLDLSRNCLTGSIPSQWATMRLVELSFMGNKLSGPFPKVLTNITTLRNLSIEGNQFSGRIPPEVRKLVSLEKLVLSSNGLTGELPKALAKLSNLTDVRISDNNFSGKIPEFISNWAQIEKLHIQGCSLEGPIPLSISTMTSLTDLRISDLKGGRSPFPSLSKMKSLKTLILRKCLIFGEVPKYIGDMKKLKNLDLSYNDLTGEVPASLERLEKIDYIILTGNKLNGIIPGWILGSNKNVDLSNNNFTWENSSPAECPRGSVTRIHPCLKRNFPCSASREQHHYSLHINCGDKEAFVRGERYEADREGASMFYTGQNWAFSSTGSFMDNDVDADNYIITNTSALSNVSVTDSELYTKARNSPQSLTYYGLCLINGNYTVKLHFAEIVFINDSSFNSLGRRVFDVYIQEKLVLKDFDIEHEAGGTGKPIMKTFTAVVTSHTLKIHFYWAGRGTTGIPLRGNYGPLISAISVDPNFTPPKNHVKKHHTIIIIGTAAAAFVLLLLVLCIMRRNGWLGGKASVYKELRGIDLQTGLFTIRQIKAATKNFDAANKVGEGGFGAVYKGLLSDGTIIAVKQLSSKSKQGNREFVNEIGMISALQHPNLVKLYGCCVDGNQLMLIYEYMENNCLSRALFRNDPASKLRLDWPTRQKICLGIARGLAYLHEESRLKIVHRDIKTSNVLLDKDFNAKISDFGLAKLHEDDNTHISTRVAGTIGYMAPEYAMRGCLTCKADVYSFGVVALEIVSGKSNTNYRPKEEFVYLLDWASVLQEKGSLLELVDPALGSDYSSEEAMVMLNVALLCTNASPTLRPLMSQVVSMLEGRTPVQALLSDPGFSAINSKLKALRNHFWQQLSPTHSLSLDDFPSDSLSSNVDPEAEENYNLVRPHSVNMTGTN 1013
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 1934774 1946237 - CrPI670011_01g002600.1 Cre01g0260 487805
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre01g0260 1013 Gene3D Transferase(Phosphotransferase) domain 1 742 947 - -
Cre01g0260 1013 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN DDB_G0281931-RELATED 30 953 IPR051824 -
Cre01g0260 1013 FunFam Putative LRR receptor-like serine/threonine-protein kinase isoform A 237 384 - -
Cre01g0260 1013 CDD STKc_IRAK 672 940 - -
Cre01g0260 1013 Pfam Leucine Rich Repeat 168 189 IPR001611 GO:0005515(InterPro)
Cre01g0260 1013 Pfam Leucine Rich Repeat 191 213 IPR001611 GO:0005515(InterPro)
Cre01g0260 1013 Pfam Leucine Rich Repeat 215 237 IPR001611 GO:0005515(InterPro)
Cre01g0260 1013 Pfam Leucine Rich Repeat 121 140 IPR001611 GO:0005515(InterPro)
Cre01g0260 1013 Pfam Leucine rich repeat 287 346 IPR001611 GO:0005515(InterPro)
Cre01g0260 1013 FunFam Probable LRR receptor-like serine/threonine-protein kinase RFK1 43 206 - -
Cre01g0260 1013 ProSiteProfiles Protein kinase domain profile. 666 948 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cre01g0260 1013 SUPERFAMILY Protein kinase-like (PK-like) 651 939 IPR011009 -
Cre01g0260 1013 FunFam Putative leucine-rich repeat receptor-like serine/threonine-protein kinase 404 594 - -
Cre01g0260 1013 ProSitePatterns Serine/Threonine protein kinases active-site signature. 789 801 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cre01g0260 1013 Gene3D Ribonuclease Inhibitor 275 387 IPR032675 -
Cre01g0260 1013 Gene3D Ribonuclease Inhibitor 38 274 IPR032675 -
Cre01g0260 1013 Gene3D Phosphorylase Kinase; domain 1 637 741 - -
Cre01g0260 1013 SUPERFAMILY L domain-like 60 401 - -
Cre01g0260 1013 ProSitePatterns Protein kinases ATP-binding region signature. 672 694 IPR017441 GO:0005524(InterPro)
Cre01g0260 1013 Pfam Malectin domain 406 589 IPR021720 -
Cre01g0260 1013 FunFam probable LRR receptor-like serine/threonine-protein kinase At1g53430 635 741 - -
Cre01g0260 1013 FunFam Putative LRR receptor-like serine/threonine-protein kinase 742 950 - -
Cre01g0260 1013 SMART serkin_6 666 936 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cre01g0260 1013 Gene3D - 402 593 - -
Cre01g0260 1013 Pfam Protein tyrosine and serine/threonine kinase 669 880 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre01g0260 Cre-Chr1:1934774 Cre11g2137 Cre-Chr11:33063050 6.70E-211 dispersed
Cre10g0556 Cre-Chr10:5050812 Cre01g0260 Cre-Chr1:1934774 6.00E-46 dispersed
Cre01g0260 Cre-Chr1:1934774 Cre11g2136 Cre-Chr11:33047180 3.00E-203 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
63798 PF07714 PK_Tyr_Ser-Thr 2.70E-49 CL0016 Cre PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre01g0260 - - - 0.0