Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre01g0284 ATGGCGGCCAGGCCCAACTCCGTTTCCTTCAGGGTTCCGTACAAGAACCTCCATGATGCAGAAGTGGAGATGGTGGCTGTCGATGAACACCAGCTCCACGGGATCGATCTCAATTCTCCTTCTTCTGATGGATGTCCCAATGGAAGCCAAGATAGTTCATCCTCAACGCCTCATGTTAGATCTACGCCCAATAGTTTGATTATCTTAGTTCTGAGTTGTACTATCGCTGCCGGTGTTCAATTTGGTTGGGCATTACAGCTTTCCTTACTAACTCCCTATATTCAGACGCTCGGAATTGAGCATGCATTTTCTTCCTTTATTTGGCTTTGCGGTCCCATCACTGGTCTCGTGGTTCAACCATGTGTCGGTATATGGAGTGACAAGTGTTCTTCAAAATATGGAAGGAGGCGTCCCTTTATTCTTGCTGGGTCTTTAATGATAGCAGTTGCTGTGGTGTTGATTGGATTTTCTGCTGACATTGGATATATACTAGGAGATACAAAGGAGCACTGCAGAGTATATAAGGGTACACGAACAAGGGCAGCTATTATCTTTGTAATAGGCTTTTGGATGCTTGACCTTGCAAACAATACGGTGCAGGGTCCTGCTCGTGCTCTTCTAGCTGATTTATCAGGTCCTGATCAACACAATGTTGCAAATGCGGTATTTTGTTCATGGATGGCTGTTGGTAATATCCTTGGTTTTTCAGCAGGAGCTAGTGGAAACTGGCACAAATGGTTTCCTTTCCTTTTAAGTAATGCTTGCTGTGAAGCCTGTGGGAACCTTAAAGCTGCATTTCTTATTGCTGTGCTTTTTCTAACCATATGTACTCTTGTTACCATATATTTTGCCGATGAAGTTCCACTTACTGCTGTAGATCAACCACCACGTTTATCAGATTCTGCGCCTCTGTTGAATGGGAATGAACAAAATAGTCCTAATATTTTAAAACCAGAACTTAACAGTCGGAATGGGAGCAGTGTTGACTATGGCTATCAAGAAAATATTAATTTGAAAAATTCAAAACCAATAAGTGAGGAAAATCACAGCGAAGGTTATTATGATGGTCCTGCAACAGTGGTAGTCAAATTGTTGACCAGTTTAAGACATTTACCGCCGGCCATGCATTCAGTGCTTCTTGTGATGGCTCTTAGTTGGTTATCCTGGTTTCCCTTCTTCTTATTTGATACGGATTGGATGGGAAGGGAAGTGTATCATGGGGACCCAAAAGGCAGTTTGACTGACGAACAGGTTTATGATCAGGGTGTGAGAGAAGGTGCATTTGGTTTGCTATTGAATTCTGTTGTTCTTGGTATCAGTTCTTTCTTTATAGAGCCCATGTGTCAGCGCATGGGAGCAAGACTTGTCTGGGCAATGAGCAACTTTATTGTGTTTGCATGCATGACGGGAACTACTATTATCAGTTTAATATCCGTCAGTCAATACTCTGAAGGAATTGAACATATTATTGGGGGAAATTCAACAATAAAAAATGCTGCCTTGGCTGTTTTTGCTCTTCTTGGTTTTCCTCTCGCCATAACATATAGTGTCCCCTTCTCTTTGACAGCAGAATTGACTGCTGATTCTGGTGGTGGTCAAGGATTGGCAATAGGAGTTCTCAATCTTGCAGTTGTTATTCCCCAGATGATTGTATCCCTGGGAGCTGGGCCATGGGATGCTTTATTCAGTGGAGGAAACATTCCTGCATTTGCTTTAGCCTCTATATGTGCGCTTGCGGCCGGAGTGGTCGCAGTTCTTAGATTGCCTAAGCAAACCAACAGTTCTTTCAAATCCACAGTGAAGGAAAAGATTCCTGGAGTTGCTCTTAGAAAGAAGGCTGAATTTCCAGTGCCCCACCAATACATCCGTGTACCTTATACCTTTATTTAA 1890 42.91 MAARPNSVSFRVPYKNLHDAEVEMVAVDEHQLHGIDLNSPSSDGCPNGSQDSSSSTPHVRSTPNSLIILVLSCTIAAGVQFGWALQLSLLTPYIQTLGIEHAFSSFIWLCGPITGLVVQPCVGIWSDKCSSKYGRRRPFILAGSLMIAVAVVLIGFSADIGYILGDTKEHCRVYKGTRTRAAIIFVIGFWMLDLANNTVQGPARALLADLSGPDQHNVANAVFCSWMAVGNILGFSAGASGNWHKWFPFLLSNACCEACGNLKAAFLIAVLFLTICTLVTIYFADEVPLTAVDQPPRLSDSAPLLNGNEQNSPNILKPELNSRNGSSVDYGYQENINLKNSKPISEENHSEGYYDGPATVVVKLLTSLRHLPPAMHSVLLVMALSWLSWFPFFLFDTDWMGREVYHGDPKGSLTDEQVYDQGVREGAFGLLLNSVVLGISSFFIEPMCQRMGARLVWAMSNFIVFACMTGTTIISLISVSQYSEGIEHIIGGNSTIKNAALAVFALLGFPLAITYSVPFSLTAELTADSGGGQGLAIGVLNLAVVIPQMIVSLGAGPWDALFSGGNIPAFALASICALAAGVVAVLRLPKQTNSSFKSTVKEKIPGVALRKKAEFPVPHQYIRVPYTFI 629
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 2227683 2233454 - CrPI670011_01g002840.1 Cre01g0284 487829

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cre01g0284 629 Pfam Major Facilitator Superfamily 76 477 IPR011701 GO:0022857(InterPro)|GO:0055085(InterPro)
Cre01g0284 629 FunFam Sucrose transport protein SUT5 376 596 - -
Cre01g0284 629 PANTHER SUGAR TRANSPORTER 65 586 - GO:0008506(PANTHER)|GO:0016020(PANTHER)
Cre01g0284 629 SUPERFAMILY MFS general substrate transporter 54 591 IPR036259 -
Cre01g0284 629 FunFam Sucrose transporter SUC2 67 291 - -
Cre01g0284 629 MobiDBLite consensus disorder prediction 300 324 - -
Cre01g0284 629 Gene3D MFS general substrate transporter like domains 62 589 IPR036259 -
Cre01g0284 629 CDD MFS_SLC45_SUC 69 586 - -
Cre01g0284 629 MobiDBLite consensus disorder prediction 38 59 - -
Cre01g0284 629 MobiDBLite consensus disorder prediction 301 324 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre01g0284 K15378 - - csv:101205348 1128.62
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre01g0284 Cre-Chr1:2227683 Cre08g1137 Cre-Chr8:24580666 4.90E-119 dispersed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cre11g1419 . 14 492 Sucrose Transporter Gene Family AT1G22710 62.2 1.9e-174 609.4
Cre11g1426 . 14 484 Sucrose Transporter Gene Family AT1G22710 62.8 4.3e-174 608.2
Cre08g1137 . 32 477 Sucrose Transporter Gene Family AT1G22710 50.9 7.0e-132 468.0
Cre11g1419 . 14 479 Sucrose Transporter Gene Family AT2G14670 62.8 8.7e-172 600.5
Cre11g1426 . 14 479 Sucrose Transporter Gene Family AT2G14670 62.8 8.7e-172 600.5
Cre08g1137 . 25 477 Sucrose Transporter Gene Family AT2G14670 51.6 2.4e-129 459.5
Cre11g1419 . 14 409 Sucrose Transporter Gene Family AT1G66570 60.6 2.1e-143 506.1
Cre11g1426 . 14 409 Sucrose Transporter Gene Family AT1G66570 60.6 2.1e-143 506.1
Cre01g0284 . 152 599 Sucrose Transporter Gene Family AT2G02860 70.1 2.3e-182 635.6
Cre11g1419 . 8 479 Sucrose Transporter Gene Family AT5G06170 60.3 8.1e-162 567.4
Cre11g1426 . 8 479 Sucrose Transporter Gene Family AT5G06170 60.3 8.1e-162 567.4
Cre08g1137 . 31 477 Sucrose Transporter Gene Family AT5G06170 50.4 2.3e-124 443.0
Cre11g1419 . 17 479 Sucrose Transporter Gene Family AT5G43610 62.8 6.2e-170 594.3
Cre11g1426 . 17 479 Sucrose Transporter Gene Family AT5G43610 62.8 6.2e-170 594.3
Cre08g1137 . 31 477 Sucrose Transporter Gene Family AT5G43610 51.0 1.5e-126 450.3
Cre08g1137 . 18 478 Sucrose Transporter Gene Family AT1G09960 71.5 6.2e-197 684.1
Cre11g1419 . 8 489 Sucrose Transporter Gene Family AT1G09960 51.1 1.4e-132 470.3
Cre11g1426 . 8 489 Sucrose Transporter Gene Family AT1G09960 51.1 1.4e-132 470.3
Cre11g1419 . 14 495 Sucrose Transporter Gene Family AT1G71880 61.6 1.7e-170 596.3
Cre11g1426 . 14 495 Sucrose Transporter Gene Family AT1G71880 61.3 5.0e-170 594.7
Cre08g1137 . 31 477 Sucrose Transporter Gene Family AT1G71880 52.6 4.0e-127 452.2
Cre11g1419 . 17 484 Sucrose Transporter Gene Family AT1G71890 60.0 2.4e-164 575.9
Cre11g1426 . 17 484 Sucrose Transporter Gene Family AT1G71890 60.0 2.4e-164 575.9
Cre11g1419 . 14 495 Sucrose Transporter Gene Family AT1G71880 61.6 1.7e-170 596.3
Cre11g1426 . 14 495 Sucrose Transporter Gene Family AT1G71880 61.3 5.0e-170 594.7
Cre08g1137 . 31 477 Sucrose Transporter Gene Family AT1G71880 52.6 4.0e-127 452.2
Cre11g1419 . 14 492 Sucrose Transporter Gene Family AT1G22710 62.2 1.9e-174 609.4
Cre11g1426 . 14 484 Sucrose Transporter Gene Family AT1G22710 62.8 4.3e-174 608.2
Cre08g1137 . 32 477 Sucrose Transporter Gene Family AT1G22710 50.9 7.0e-132 468.0
Cre01g0284 . 152 599 Sucrose Transporter Gene Family AT2G02860 70.1 2.3e-182 635.6
Cre08g1137 . 18 478 Sucrose Transporter Gene Family AT1G09960 71.5 6.2e-197 684.1
Cre11g1419 . 8 489 Sucrose Transporter Gene Family AT1G09960 51.1 1.4e-132 470.3
Cre11g1426 . 8 489 Sucrose Transporter Gene Family AT1G09960 51.1 1.4e-132 470.3
Cre11g1419 . 17 484 Sucrose Transporter Gene Family AT1G71890 60.0 2.4e-164 575.9
Cre11g1426 . 17 484 Sucrose Transporter Gene Family AT1G71890 60.0 2.4e-164 575.9
Cre11g1419 . 17 479 Sucrose Transporter Gene Family AT5G43610 62.8 6.2e-170 594.3
Cre11g1426 . 17 479 Sucrose Transporter Gene Family AT5G43610 62.8 6.2e-170 594.3
Cre08g1137 . 31 477 Sucrose Transporter Gene Family AT5G43610 51.0 1.5e-126 450.3
Cre11g1419 . 14 409 Sucrose Transporter Gene Family AT1G66570 60.6 2.1e-143 506.1
Cre11g1426 . 14 409 Sucrose Transporter Gene Family AT1G66570 60.6 2.1e-143 506.1
Cre11g1419 . 14 479 Sucrose Transporter Gene Family AT2G14670 62.8 8.7e-172 600.5
Cre11g1426 . 14 479 Sucrose Transporter Gene Family AT2G14670 62.8 8.7e-172 600.5
Cre08g1137 . 25 477 Sucrose Transporter Gene Family AT2G14670 51.6 2.4e-129 459.5
Cre11g1419 . 8 479 Sucrose Transporter Gene Family AT5G06170 60.3 8.1e-162 567.4
Cre11g1426 . 8 479 Sucrose Transporter Gene Family AT5G06170 60.3 8.1e-162 567.4
Cre08g1137 . 31 477 Sucrose Transporter Gene Family AT5G06170 50.4 2.3e-124 443.0
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005106 1 2 1 1 1 1 2 1 1 1 0 1 2 1 1 2 1 2 1 1 1 1 2 1 1 1 2 4 3 1 41