Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre01g0322 ATGCTTGTAATTCTAAGGAATCTCTTTCTTCCTCATCATTTCTTTACCATAGCCTTGCTTTTATGTGTAAAATCCCTTCTCTTTTCTTCTTGTTACTCCATTGATGAGCAGGGTAGAATTCTTCTTGAATGGAAGAATAATCTAACAAGCCCCACAGATGTTTTGCGTTCGTGGAATCCGGAGGCGGCGACGCCATGTTCATGGTTTGGAGTTATATGCAACTCCAATGGAGAGGTGGTGGAGATAGTCCTGACACTAGTGGAATTGGAAGGTACGTTGCCTACAAATTTTCAGGCTCTCAAGTCCTTGAGGGTCCTTGTGATCTCTGAGACGAATATTACTGGAAGAATTCCGAAAGAATTCGGAGATTATAGTGAGCTCAATGTTCTTGATCTTAGCAGAAATTACCTCTTGGGGAAAATCCCAGAAGAGATTTGCAGGCTGAGCAAGCTGCAGGATTTGTTTCTTCATAACAATGATTTTGAAGGGAACCTACCCTTGAAGATTGGAAATCTTTCGAGCCTTGTGAATTTCCAAATCTCAGACAATAATATCAATGGGGAGGTTCCAAAGAGCATTGGAATGTTGAAGAATCTTTATCTTTTCAAAGCTGGAGGGAATAAATTTCTACAGGGTGTAGTGCCAAGGGAGATTGGAAACTGCAGCAGTTTAACGGTGTTAGGCTTATCCGACACCGGAATCTACGGTCCTCTTCCTTCATCAATAGGGATGCTGCAAAAAATCCAGACCATACACATGTATAGATCACAACTTTTTGGTCCACTCCCAGAAGAGATTACAAACTGTAGTGAACTGCAGACTCTTCGACTGTATCAGAATGGTATTTCTGGACAAATACCAAGACGAATCGGGGAGATGAAAAAGCTTAGCGTCCTTCTTCTATGGTTGAACTTGATGGAGGGTGAAATTCCAGAAGAAATTGGCAACTGCCAGGAACTGGTACTATTTGATTTTTCAGAAAATTCTCTAACGGGAACTATACCAAAAAGTCTAGGCCGACTTCCAAAACTCGAAGACATTCAACTAAGAATTAATCAGCTTACTGGTACAATACCACCTGAAATTTCTAATATTTCTACTTTGGTTCACCTGGAAATAGACAACAACAAATTATGGGGGGAGATACCAGTTGATATAGGTAACCTCAAGAACCTGCGTACATTGCTACTATGGGAGAACAAATTAACAGGCCCTATTCCCATCACCCTCCCAGACTGCCCAAATCTCACTTTGATTGATTTATCTTTCAATCAGTTAACAGGTCCAATACCGACACGGATTTTCGCTTTGAAAGGACTCACCAAACTTCTTATGTTATCAAATAATCTATCAGGGATTATTCCTCCTGAAATTGGAAACTGTACCACACTATCCAGGCTAAGACTGTCTAAAAATAAGCTTGGAGGTACTATTCCATCAGAGATGGGAAATCTCAGGAACTTAGAACTTCTTGATATGGGCCAAAACCTTTTTGTTGGAGGATTTCCTTCATCCTTTTCCACATGTAACAAGCTTGAGTCTCTTGACCTACGTTCAAATAGGCTCACTAGTCTTCCAAATACTCTGCCAAAGAGCTTAGTGTATTTTAATGCATCCAACAACAGGCTTAAAGGTCAGCTCAACCCCAACATTGGAGGATTGATGGAATTAACTAAACTAGACCTCAAAAACAACCAGCTTTCAGGGAAAATCCCAGCAGAAATTGTTTCCTGTGAGAAAATCCAGTTTTTAGACCTCAGCAACAATTTCTTCTCTGGAGAACTCCCTAAGGAATTAGGTACATTTGCTTCACTTGAAATTGCTCTTAATCTAAGTTACAATCAATTCTCAGGTCAAATCCCATATGAATTCTCTGGTCTTACCAAGCTAAGTATTCTAGACCTCTCCCACAACAACTTCTCTGGGGAACTCAGCTTCCTTACAGATCTTGAAAACCTAGTCACTCTAAACATCTCCTACAACCATTTCTCTGGCAAATTGCCCGACAAACCCTTCTTTCAAAAGCTCCCTGAAAGCGCCGTTATCGGAAACGAAGACCTCATTTATGTTTCAGATGGAGGAGATACTCCTAAAGACAATAGGGAATCCAGCAACATAAGCAGAGAAGCAATACATATAGCCGTGCCTATCTTGATCAGCATAAGTGCAGTGCTGTTCTTTTTAGGATTCTACATGCTAATTCGAACCCACATGGCTCGTTTCATCCTCTTCACAGAAGGCAACAAATGGGAAATAACCCTGTTTCAAAAGCTCGATTTCTCAATCGACCACATTATAAGAAACTTAACTGCATCCAATGTGATCGGCACAGGAAGCTCCGGTGCCGTTTACAGAATCACAACCCCAAATGGGCAAACAATGGCAGTGAAGAAAATGTGGTCCACCGACGAAAATGGAGCCTTCAACACCGAAATCGAAACTTTGGGATCAATTCGACACAAGAACATAATTAGATTACTGGGTTGGGGATCCAACAGGAGTTTGAAGCTCTTGTTTTATGATTACCTTCCAAATGGAAACTTGAGCTCCCTTATCCATGGCCCTGAAAAAGGAGAAGCAGAGTGGGAAGTCAGATATGAAGTCCTTTTAGGAGTGGCTCACGCTCTAGCTTATCTTCACCATGATTGTATTCCACCAATCGTACATGGCGATGTGAAAACTATGAATATCCTGCTCGGCCATGACTTCGAACCATACCTAGCCGACTTTGGGATAGCCAAAATCGTGAGTACAAAAAGCGGCAATGATAATTCAGAGACGCCATCGTTGAGACCTCAACTTGCTGGCTCTTTCGGCTACATGGCACCTGAACAAGGGTCGATGTTGAGAGTTACAGAGAAGAGCGATGTGTATAGCTTCGGTGTGGTGATAATGGAAGTTCTAACAGGGCGGCACCCGCTGGACCCGACTTTACCAGGAGGATCCAATTTGGTGCAATGGGTTCAAGATCATTTCGCCACACACCGAAACACAGCCGACATTTTCGATTCAAAGCTCAGAGGAAGAACCGATCCCACAATCCACGAAATGATTCAAACCCTAGCCGTCGCATTGGTCTGTGCCAGCGTTAAGGCCGACGATCGACCGCCTATGAAAGATGTCGTCACCATGCTCGAGGAGATTCGACATGTCGAATCGGGAAGAGCTGCTACCGACGTCCCCATGCCGGAAATGGCGGTAGTGGTTCAATCGCCGCCGTAG 3222 42.86 MLVILRNLFLPHHFFTIALLLCVKSLLFSSCYSIDEQGRILLEWKNNLTSPTDVLRSWNPEAATPCSWFGVICNSNGEVVEIVLTLVELEGTLPTNFQALKSLRVLVISETNITGRIPKEFGDYSELNVLDLSRNYLLGKIPEEICRLSKLQDLFLHNNDFEGNLPLKIGNLSSLVNFQISDNNINGEVPKSIGMLKNLYLFKAGGNKFLQGVVPREIGNCSSLTVLGLSDTGIYGPLPSSIGMLQKIQTIHMYRSQLFGPLPEEITNCSELQTLRLYQNGISGQIPRRIGEMKKLSVLLLWLNLMEGEIPEEIGNCQELVLFDFSENSLTGTIPKSLGRLPKLEDIQLRINQLTGTIPPEISNISTLVHLEIDNNKLWGEIPVDIGNLKNLRTLLLWENKLTGPIPITLPDCPNLTLIDLSFNQLTGPIPTRIFALKGLTKLLMLSNNLSGIIPPEIGNCTTLSRLRLSKNKLGGTIPSEMGNLRNLELLDMGQNLFVGGFPSSFSTCNKLESLDLRSNRLTSLPNTLPKSLVYFNASNNRLKGQLNPNIGGLMELTKLDLKNNQLSGKIPAEIVSCEKIQFLDLSNNFFSGELPKELGTFASLEIALNLSYNQFSGQIPYEFSGLTKLSILDLSHNNFSGELSFLTDLENLVTLNISYNHFSGKLPDKPFFQKLPESAVIGNEDLIYVSDGGDTPKDNRESSNISREAIHIAVPILISISAVLFFLGFYMLIRTHMARFILFTEGNKWEITLFQKLDFSIDHIIRNLTASNVIGTGSSGAVYRITTPNGQTMAVKKMWSTDENGAFNTEIETLGSIRHKNIIRLLGWGSNRSLKLLFYDYLPNGNLSSLIHGPEKGEAEWEVRYEVLLGVAHALAYLHHDCIPPIVHGDVKTMNILLGHDFEPYLADFGIAKIVSTKSGNDNSETPSLRPQLAGSFGYMAPEQGSMLRVTEKSDVYSFGVVIMEVLTGRHPLDPTLPGGSNLVQWVQDHFATHRNTADIFDSKLRGRTDPTIHEMIQTLAVALVCASVKADDRPPMKDVVTMLEEIRHVESGRAATDVPMPEMAVVVQSPP 1073
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 2654030 2657346 - CrPI670011_01g003220.1 Cre01g0322 487867
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre01g0322 1073 Gene3D Ribonuclease Inhibitor 227 333 IPR032675 -
Cre01g0322 1073 ProSitePatterns Protein kinases ATP-binding region signature. 775 798 IPR017441 GO:0005524(InterPro)
Cre01g0322 1073 FunFam Putative LRR receptor-like serine/threonine-protein kinase 754 842 - -
Cre01g0322 1073 Pfam Leucine rich repeat 463 522 IPR001611 GO:0005515(InterPro)
Cre01g0322 1073 Pfam Leucine rich repeat 102 161 IPR001611 GO:0005515(InterPro)
Cre01g0322 1073 Pfam Leucine rich repeat N-terminal domain 35 74 IPR013210 -
Cre01g0322 1073 SUPERFAMILY L domain-like 553 677 - -
Cre01g0322 1073 Pfam Leucine Rich Repeat 652 669 IPR001611 GO:0005515(InterPro)
Cre01g0322 1073 Pfam Leucine Rich Repeat 581 601 IPR001611 GO:0005515(InterPro)
Cre01g0322 1073 Pfam Leucine Rich Repeat 368 389 IPR001611 GO:0005515(InterPro)
Cre01g0322 1073 Pfam Leucine Rich Repeat 609 627 IPR001611 GO:0005515(InterPro)
Cre01g0322 1073 Pfam Leucine Rich Repeat 415 434 IPR001611 GO:0005515(InterPro)
Cre01g0322 1073 Pfam Leucine Rich Repeat 557 577 IPR001611 GO:0005515(InterPro)
Cre01g0322 1073 Gene3D Transferase(Phosphotransferase) domain 1 843 1061 - -
Cre01g0322 1073 SMART serkin_6 769 1045 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cre01g0322 1073 FunFam LRR receptor-like serine/threonine-protein kinase RCH1 843 1062 - -
Cre01g0322 1073 ProSiteProfiles Protein kinase domain profile. 769 1048 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cre01g0322 1073 SUPERFAMILY L domain-like 211 598 - -
Cre01g0322 1073 Gene3D Ribonuclease Inhibitor 33 209 IPR032675 -
Cre01g0322 1073 Gene3D Ribonuclease Inhibitor 334 434 IPR032675 -
Cre01g0322 1073 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 532 1050 IPR050647 -
Cre01g0322 1073 FunFam LRR receptor-like serine/threonine-protein kinase RCH1 208 407 - -
Cre01g0322 1073 Pfam Protein kinase domain 772 976 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cre01g0322 1073 Gene3D Phosphorylase Kinase; domain 1 748 842 - -
Cre01g0322 1073 SUPERFAMILY Protein kinase-like (PK-like) 760 1048 IPR011009 -
Cre01g0322 1073 Gene3D Ribonuclease Inhibitor 435 691 IPR032675 -
Cre01g0322 1073 ProSitePatterns Serine/Threonine protein kinases active-site signature. 887 899 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cre01g0322 1073 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 526 692 - -
Cre01g0322 1073 SMART LRR_typ_2 554 578 IPR003591 -
Cre01g0322 1073 SMART LRR_typ_2 414 437 IPR003591 -
Cre01g0322 1073 SMART LRR_typ_2 627 650 IPR003591 -
Cre01g0322 1073 SMART LRR_typ_2 341 365 IPR003591 -
Cre01g0322 1073 SMART LRR_typ_2 148 172 IPR003591 -
Cre01g0322 1073 SMART LRR_typ_2 509 532 IPR003591 -
Cre01g0322 1073 SMART LRR_typ_2 389 413 IPR003591 -
Cre01g0322 1073 FunFam Probable leucine-rich repeat receptor-like protein kinase At2g33170 34 188 - -
Cre01g0322 1073 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 431 525 - -
Cre01g0322 1073 SUPERFAMILY L domain-like 34 305 - -
Cre01g0322 1073 ProSiteProfiles Leucine-rich repeat profile. 511 532 IPR001611 GO:0005515(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre01g0322 Cre-Chr1:2654030 Cre06g1542 Cre-Chr6:10320184 1.90E-94 dispersed
Cre01g0322 Cre-Chr1:2654030 Cre06g2581 Cre-Chr6:33503338 2.70E-16 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
63799 PF00069 Pkinase 9.60E-36 CL0016 Cre PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre01g0322 - - - 0.0