Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre01g0328 ATGATTCATTCTGGTTTCTTCCTTGCGGGACCGTCGTTTAATTCTGATGCTACTACGTCTTTCATATCAATTCCGGTGTCTGGAGAAGATGGCGCTACAGGGGATGATATCAGAAACGATACGTCTGATTCCGTCCCCCCTTCTTTTTGGGTTAGAACAGCGATGAAAATATCGAGAGCTAGATGGTTTATTTTCTTGAGAAGAGTTTTCCACTACCAAAACGGATCGAGATCTGATCTTGGGCCGAATCCTTTCAATTCAGGTTCGTGGATGGCGATGGAATTTGTAGCTCTGTTGTTTCAGCTAATTATCTCAGCGTTTACTTTTGCCATTTCACGGGCTGAGAGTCCAGTTTGGCCTATGAGATTGTGGATAGGTGGTTATGATCTTGGCTGTGTTCTTAGCTTATTGCTTCTCTACGGCCGCCGTCGGTATAATTATCTAATGCAGGGAGATGGTGACAGTCTTTCAGATATAGAACACGAACAGCAGAGGAGCAATGAATCATCAAGGTACTCACATTTGATGAACAAATGCCGCACGTCTCTTGATCTTTTCTTTGCAATATGGTTTGTAATGGGCAATCTTTGGGCCTTTGATTCTCGCCTAGCCTCGTTCCAGAGAGCTCCCAAGCTACATCTACTCTGCAGCTTCCTGCTAGTTTGGAATGCCATCTGCTACTCTTTCCCATTTATCCTGTTTCTGCTGCTATGTTGCTGTGTGCCATTGATTAGTAGCTTTATAGGATATAACATTAACATGGGATCAACCGAAAAAGGAGCGTTAGACGATCAAATTTCCCAGCTACCTTGCTGGAAATACAAAGCAGTGGACGCCAACATCAACCCTGGAAGTCAACCCCACAATAGCAATACAGGACTTCCAAAAGAGGATCCAGAATGTTGCATTTGCCTTGCCAAGTATATAGACAAGGAAGAAGTGAGACAGTTGCCTTGTTCCCATGTGTTTCATCTCAAGTGTGTAGATAAGTGGCTTGCTATTACATCTTCATGCCCGCTTTTTGATCTTCAGTCTCCATCTCTGTTTTCGCCTTCCTCTCCTTTTCCTCCACCATTTCCGAAAGCTCCCCTTTTCCCTCCATTTCCTTCTATTTACACTTCCATGTCCCCTTTTCCCTCTTTCTTTCCCCTTTTCCCCATTGCCTTTGAGGCTCATTCAAGTTACCCCTTCAAAGTTAAAACCCAACTGCCTGATCCTCGTGGGTTTGTTCTGGACTGTGACGATAAGGAAAGGTCGTTTTCAATGATCAATTCTGGTTATTTCGTTTCGGGGCCGTCGTGTAACTGTGGTGGCACTGCTTCCTTTATCTCGAATTCGTTGGTGGAAGAAGATGGTGCAGGTGCGGATGTTAGAGACGACAATTCTGTTGCTCTCCCTGCATCTTTCTGGGTTAGGATAGCGATGAGAGTGTCTAGAGCCAGGTGGTTCATTTTCTTACGAAGGGTATTTCACTACCAGAATGGATCAAGATCGGATCTCAGGTCTGATCCTTTCAATTCTATCTCGTGGATGGCTATGGAGCTGGTAGCTATGGTGTTTCAGCTGGCCATCACAGTGTTTTTTCTTGCCATTTCAGAGACGGAGAAGCCAGTTTGGCCTATGAGACTGTGGATAGTTGGTTATGATCTAGGATGCATTCTTAGTTTGTTGCTTCTCTACGGGCGATATTGGCATCTTTATTTAATGCGTGGAGACCATGTCGGCCTTTCTGAGACCGAGCAGCGGAGGAGCAGTCAAGCATCAAGGAGCTTGCGTTTGATGAACAAATGCCGGTCATCTCTTGAACTTTTCTTTGCAATATGGTTCGTAATGGGTAATGTTTGGATTGTCGATTCTCGCTTCAGTTCGTTCCAAAGAGCTCCCAAGCTTCATCTGCTATGTGTCTTCCTATTAGTTTGGAATGCCATCTGCTACTCCTTTCCGTTCATTCTCTTTCTGCTGCTATGTTGCTGTGTGCCATTGGTTAGTAGCCTTCTAGGATATAACATTAACATGGCATCAACCGACAAAGGAGCATCGGATGATCAAATATCTCAGCTACCGTGCTGGAGATATAAAGTGAGCTCAATGCAACCTGATAGTAACAAAGGACTTCCAAAAGAGGATCCAGAATGTTGCATTTGCCTTGTCAAGTACAGAGATGAAGAAGAAGTAAGACAGTTACCTTGTTCCCATTTGTTCCATCTCAAGTGTGTAGATAAGTGGCTTTCAATCACATCTTCTTGCCCTCTCTGTAAGCAACAACTTCAAAAATAG 2277 44.18 MIHSGFFLAGPSFNSDATTSFISIPVSGEDGATGDDIRNDTSDSVPPSFWVRTAMKISRARWFIFLRRVFHYQNGSRSDLGPNPFNSGSWMAMEFVALLFQLIISAFTFAISRAESPVWPMRLWIGGYDLGCVLSLLLLYGRRRYNYLMQGDGDSLSDIEHEQQRSNESSRYSHLMNKCRTSLDLFFAIWFVMGNLWAFDSRLASFQRAPKLHLLCSFLLVWNAICYSFPFILFLLLCCCVPLISSFIGYNINMGSTEKGALDDQISQLPCWKYKAVDANINPGSQPHNSNTGLPKEDPECCICLAKYIDKEEVRQLPCSHVFHLKCVDKWLAITSSCPLFDLQSPSLFSPSSPFPPPFPKAPLFPPFPSIYTSMSPFPSFFPLFPIAFEAHSSYPFKVKTQLPDPRGFVLDCDDKERSFSMINSGYFVSGPSCNCGGTASFISNSLVEEDGAGADVRDDNSVALPASFWVRIAMRVSRARWFIFLRRVFHYQNGSRSDLRSDPFNSISWMAMELVAMVFQLAITVFFLAISETEKPVWPMRLWIVGYDLGCILSLLLLYGRYWHLYLMRGDHVGLSETEQRRSSQASRSLRLMNKCRSSLELFFAIWFVMGNVWIVDSRFSSFQRAPKLHLLCVFLLVWNAICYSFPFILFLLLCCCVPLVSSLLGYNINMASTDKGASDDQISQLPCWRYKVSSMQPDSNKGLPKEDPECCICLVKYRDEEEVRQLPCSHLFHLKCVDKWLSITSSCPLCKQQLQK 758
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 2710089 2716294 - CrPI670011_01g003280.1 Cre01g0328 487873
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre01g0328 758 PANTHER C3H4 TYPE ZINC FINGER PROTEIN 466 757 - -
Cre01g0328 758 SMART ring_2 301 341 IPR001841 -
Cre01g0328 758 SMART ring_2 712 752 IPR001841 -
Cre01g0328 758 ProSiteProfiles Zinc finger RING-type profile. 712 753 IPR001841 -
Cre01g0328 758 SUPERFAMILY RING/U-box 296 340 - -
Cre01g0328 758 ProSiteProfiles Zinc finger RING-type profile. 301 340 IPR001841 -
Cre01g0328 758 CDD RING-H2_RNF6-like 711 753 - -
Cre01g0328 758 Pfam Ring finger domain 711 753 IPR001841 -
Cre01g0328 758 Pfam Ring finger domain 300 340 IPR001841 -
Cre01g0328 758 SUPERFAMILY RING/U-box 707 756 - -
Cre01g0328 758 SMART ringv_2 711 753 IPR011016 GO:0008270(InterPro)
Cre01g0328 758 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 250 344 IPR013083 -
Cre01g0328 758 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 667 758 IPR013083 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre01g0328 Cre-Chr1:2710089 Cre08g1229 Cre-Chr8:25500876 1.30E-46 dispersed
Cre01g0328 Cre-Chr1:2710089 Cre07g1863 Cre-Chr7:34022566 3.40E-10 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre01g0328 - - - 0.0