Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre01g0354 ATGGGTAGCCAAGAAGCTAGACAGCCACTGTTACCAACATCGTCTAATACTAGAAAAAGGTTAATCGATATCCCTAGAAGCAAAAGACGATTGAGGCGCACTAAGAGTGCTCCTCATGCAGATTCTCCTCATACAGAGATCACCTGCACCGGCAACGTTCCGGACACTGGTCCAGTTCCACGTTCAGGATTAATTTTCGGAAATATACACCCAAGTTTCAGAAGAGCAGCCTTAGTTTTAATAATATACCTGGGTATAGGAACTTTATGTTTTTACCTTGTCAGGTACCAAATCAAAGGTGAAAAAACAAACGGAATAGTTGATGCCATTTATTTCACTATTGTGACAATGACAACTGTTGGATATGGAGATCTTGTCCCAAACAGTCCTTCCACAAAACTACTAGCTTGTGCTTTCGTTTTCACAGGAATGGCCCTAGTCGGCCTAATACTGAGCAATGCAGCCGACTATTTGGTAGAGAAGCAGGAAATCTTGCTATTTAAAGCCTTCCATAGGCAACAAAATGGCCATTGTGACATTAGGAAAGAAATTGATACTAATAAAGCTAGAAACAAGTGTATAGTGGTGTTTCTCATTCTTCTTTTGTTCATCATTTCTGGGACTGCCTTTCTAGTATTCCTCGAGAAGTTAGATTTTATCGATGCCTTTTATTGTGTATGTTCTACGATCACGACGCTAGGCTATGGAGATAAAAGCTTCTCGACCAAGTGGGGACGTCTGTTTGCCATTTTCTGGATCTTGATAAGTACCATCACTCTAGCCCAGTTTTTCCTTTCCATCGCTGAGCTAAACACTGAAAGAAGGCAAAAATCTCTGGTGAAGTGGGTTCTATGTAAAAAGGTGACAGACTTAGACCTCGAGGTTGCAGATCTCGATGATGACGGGGTCGTCGGGGCTGCAGAATTTGTCATATACAAGCTCAAGGAGATGGGAAAGATTACTGAAGATGACATTGCACCTGTGTTGAAGGAATTTGAGAATCTTGATGTTGATCAATCAGGAACCCTGTCCAAATCTGATATAACACTTGCTCAATTATCCTAA 1065 41.31 MGSQEARQPLLPTSSNTRKRLIDIPRSKRRLRRTKSAPHADSPHTEITCTGNVPDTGPVPRSGLIFGNIHPSFRRAALVLIIYLGIGTLCFYLVRYQIKGEKTNGIVDAIYFTIVTMTTVGYGDLVPNSPSTKLLACAFVFTGMALVGLILSNAADYLVEKQEILLFKAFHRQQNGHCDIRKEIDTNKARNKCIVVFLILLLFIISGTAFLVFLEKLDFIDAFYCVCSTITTLGYGDKSFSTKWGRLFAIFWILISTITLAQFFLSIAELNTERRQKSLVKWVLCKKVTDLDLEVADLDDDGVVGAAEFVIYKLKEMGKITEDDIAPVLKEFENLDVDQSGTLSKSDITLAQLS 354
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 2954113 2955352 - CrPI670011_01g003540.1 Cre01g0354 487899
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre01g0354 354 Gene3D - 177 281 - -
Cre01g0354 354 MobiDBLite consensus disorder prediction 1 53 - -
Cre01g0354 354 SUPERFAMILY EF-hand 292 349 IPR011992 -
Cre01g0354 354 ProSitePatterns EF-hand calcium-binding domain. 336 348 IPR018247 -
Cre01g0354 354 ProSitePatterns EF-hand calcium-binding domain. 297 309 IPR018247 -
Cre01g0354 354 FunFam Calcium-activated outward-rectifying potassium channel 1 70 165 - -
Cre01g0354 354 Pfam Ion channel 199 271 IPR013099 -
Cre01g0354 354 Pfam Ion channel 79 159 IPR013099 -
Cre01g0354 354 PRINTS Two pore domain K+ channel signature 231 240 IPR003280 GO:0005267(InterPro)|GO:0016020(InterPro)|GO:0071805(InterPro)
Cre01g0354 354 PRINTS Two pore domain K+ channel signature 115 143 IPR003280 GO:0005267(InterPro)|GO:0016020(InterPro)|GO:0071805(InterPro)
Cre01g0354 354 PANTHER POTASSIUM CHANNEL, SUBFAMILY K 76 291 IPR003280 GO:0005267(InterPro)|GO:0005887(PANTHER)|GO:0009705(PANTHER)|GO:0015271(PANTHER)|GO:0016020(InterPro)|GO:0022841(PANTHER)|GO:0030322(PANTHER)|GO:0071805(InterPro)|GO:0071805(PANTHER)
Cre01g0354 354 Gene3D - 70 164 - -
Cre01g0354 354 SUPERFAMILY Voltage-gated potassium channels 70 177 - -
Cre01g0354 354 MobiDBLite consensus disorder prediction 1 20 - -
Cre01g0354 354 SUPERFAMILY Voltage-gated potassium channels 179 292 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre01g0354 Cre-Chr1:2954113 Cre01g0998 Cre-Chr1:15809174 1.20E-93 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre01g0354 K05389 - csv:101216032 604.364