Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre01g0361 ATGATGAAGAGGTTCTTGTGTTTCCTATGTAATAATAATCATAATGGGTTTTTCCCTCTCATTATCATTCTTGGTTTTCTTCTCTTGGGTGTCGCCGGAGAGATCTCCGGCGGCGGCGCTGGTGGAGGAGCAGAGAGATCATATGGTATGATAAGTTGGGATGATTTGCGTGTGGATGTTTCGTGGCGGCAGGGGATGAGCTCCGGCGAGGGGTTGGAGAATGGGACAAGAATAATTGTGGTGGATAAGAATGGCTCCGGCGACTCCACGACGGTGCAAGGGGCGGTGGATATGGTTCCTCATAATAACAAACAGAGAGTTAAGATTTGTATTCTTCCTGGCATTTACAGAGAGAAGGTATACATACCAATCACCAAACCATATATTTCCTTAATCGGAAACAAGAAACGAGTTACAGATACTGTTATTACATGGAACGACAAAGCTTCCGACAAAGATATGAATGGGGTCGAGCTTGGGACATATAGAACAGCGACGGTTGCGATCGACTCTGACTACTTTTGTGCAACAGGAATCACATTTGAGAATACAATTGTTGCAAAGCCTGGAGATAAGGGAAGACAAGGTGTAGCTTTAAGAATAACAGGAGATAAGGCCATGTTTTATAGAGTAAAATTCTTAGGAGGACAAGATACACTTTTGGATGACATGGGCACACATTACTTCTATCAATGTCACATTCAAGGAAGTGTTGATTTCGTATTTGGCACGGCTAGATCACTCTATGAGCAATGTGTTATAACTTCCACAGCAGAGAGCTTTGGAGCAATAGCAGCACATCATCGGGTCTCGCCAAATGATGACACTGGGTTCTCTTTCGTGCGCAGCGTAATTAATGGAAGTGGCAAAGTACTCCTGGGAAGAGCATGGGGAAACTATTCAAGAATAATTTATTCTTACTGTTACATTGAAGATGTAATAACTCCATTAGGTTGGGATGACTGGAATGACCCATCAAGACAAAGGACAGTAGTTTTTGGGCAATATAATTGCAGGGGCAGTGGAGCTAACACACAAGGTTGGGTGCCATGGGCAAAGACTTTCAGCTATGAGGAAGTGAGACCTTTTGTAGATAGAAAATATATCAAAGGAGAACAATGGCTTAACTTATGA 1134 42.86 MMKRFLCFLCNNNHNGFFPLIIILGFLLLGVAGEISGGGAGGGAERSYGMISWDDLRVDVSWRQGMSSGEGLENGTRIIVVDKNGSGDSTTVQGAVDMVPHNNKQRVKICILPGIYREKVYIPITKPYISLIGNKKRVTDTVITWNDKASDKDMNGVELGTYRTATVAIDSDYFCATGITFENTIVAKPGDKGRQGVALRITGDKAMFYRVKFLGGQDTLLDDMGTHYFYQCHIQGSVDFVFGTARSLYEQCVITSTAESFGAIAAHHRVSPNDDTGFSFVRSVINGSGKVLLGRAWGNYSRIIYSYCYIEDVITPLGWDDWNDPSRQRTVVFGQYNCRGSGANTQGWVPWAKTFSYEEVRPFVDRKYIKGEQWLNL 377
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 3006702 3010974 - CrPI670011_01g003610.1 Cre01g0361 487906
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre01g0361 377 Pfam Pectinesterase 79 371 IPR000070 GO:0030599(InterPro)|GO:0042545(InterPro)
Cre01g0361 377 PANTHER ACYL-COA THIOESTER HYDROLASE YBHC-RELATED 76 376 - GO:0030599(PANTHER)|GO:0045490(PANTHER)|GO:0052689(PANTHER)
Cre01g0361 377 ProSitePatterns Pectinesterase signature 2. 234 243 IPR033131 -
Cre01g0361 377 Gene3D - 74 377 IPR012334 -
Cre01g0361 377 FunFam Pectinesterase 74 377 - -
Cre01g0361 377 SUPERFAMILY Pectin lyase-like 77 376 IPR011050 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre01g0361 Cre-Chr1:3006702 Cre09g2114 Cre-Chr9:40129806 2.50E-78 dispersed
Cre01g0361 Cre-Chr1:3006702 Cre08g1439 Cre-Chr8:27342821 4.60E-72 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre01g0361 K01051 - csv:101209316 632.098