Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre01g0379 ATGCCTGAGAAAGAGAGCCACAATGTTGTTACAGAGCCTCGTTTGGTAGCTAGAAAGTTTCTGGCTAGGCCTCAGCATGAAGGGTTGGGCGCCATTGTTAGAAGGAGCATTGGAAGGTTTGAGCTGAAATACTTCGACCCTTTTCTAGTTTTGGATGAATTTTCAGTTACTGCCCCAGCTGGGTTCCCAGATCATCCACATAGAGGATTTGAGACAGTGACATACATGCTGCAGGGAAGTGTGACACATGAAGATTTTGAAGGGCACAAGGGAACAATAGGAGTAGGTGACTTGCAATGGATGACTGCAGGTAGAGGAATTGTACATTCAGAAATGCCTGCAGCCCAAGGTACCCAAAAGGGCCTCCAACTATGGATCAACCTCTCTTCCAAGAACAAAATGATTGAGCCAAATTACCAAGAAGTTTCAAGCAAGGGAATTCCAGAAGCTTCAAAAGATGGAGTGAGAGTGAAAGTCATAGCTGGTGAGGCATTGGGAGCAAAATCACCAATCTACACAAGAACTCCAACCATGTACTTGGACTTCACTCTCAAGCCAAAAGCTCATCTCCAGCAGCTGATCCCGTCGTCATGGAACGCATTCGTGTACATTCTTGAAGGAGAAGGCGTCTTTGGCAGCTCAAAGGCGACATCAACAACAGCACATAACCTACTTCTTCTCGGTTTCGGGGACGGTTTAGAGGTTTGGAATAAGTCAGCCAAGCCTCTTAGGTTCATTTTGGTAGGAGGTGAACCATTGAGTGAGCCTGTTGTGCAATTTGGGCCATTTGTGATGAACACTCAAGAAGAAATTGACCAAACAATTGATGATTTTGATAACTATACCAATGGATTTGAGAAAGCAAGGCATTGGAGATCAGAAGCTGGAATTTCTCTTGGGTTCTAA 906 44.81 MPEKESHNVVTEPRLVARKFLARPQHEGLGAIVRRSIGRFELKYFDPFLVLDEFSVTAPAGFPDHPHRGFETVTYMLQGSVTHEDFEGHKGTIGVGDLQWMTAGRGIVHSEMPAAQGTQKGLQLWINLSSKNKMIEPNYQEVSSKGIPEASKDGVRVKVIAGEALGAKSPIYTRTPTMYLDFTLKPKAHLQQLIPSSWNAFVYILEGEGVFGSSKATSTTAHNLLLLGFGDGLEVWNKSAKPLRFILVGGEPLSEPVVQFGPFVMNTQEEIDQTIDDFDNYTNGFEKARHWRSEAGISLGF 301
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 3170587 3173971 - CrPI670011_01g003790.1 Cre01g0379 487924
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre01g0379 301 PIRSF Pirin 12 292 IPR012093 -
Cre01g0379 301 FunFam pirin 27 163 - -
Cre01g0379 301 PANTHER PIRIN-RELATED 7 294 IPR012093 -
Cre01g0379 301 Gene3D Jelly Rolls 148 253 IPR014710 -
Cre01g0379 301 CDD cupin_pirin_N 33 128 - -
Cre01g0379 301 SUPERFAMILY RmlC-like cupins 14 293 IPR011051 -
Cre01g0379 301 CDD cupin_pirin_C 176 252 - -
Cre01g0379 301 Gene3D Jelly Rolls 27 279 IPR014710 -
Cre01g0379 301 Pfam Pirin 33 126 IPR003829 -
Cre01g0379 301 Pfam Pirin C-terminal cupin domain 179 283 IPR008778 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre01g0379 Cre-Chr1:3170587 Cre10g0693 Cre-Chr10:6607628 3.70E-133 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre01g0379 K06911 - csv:101216351 591.652