Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre01g0393 ATGAGGAAGAGGGAAAGAGAGAACCCTTGTGGGGTTTGTGGCCATTATCACAAATACGAAGAAGGGGAAGTTTGTGGGATTTGTGGTCATCGGGTTCCAGCTACATCGGAGAAAACTTCGTTGCAAGTTAGTGCGTTTCCTTCTGAGATCTTGCCGGAGTTTCTTTATTTGGGAAGTTATGATAACGCTTCACGCTCTGAACTTTTGAAGACTCAAGGAATCTCCCGTGTTCTTAACACTGTGCCTGCTTGTCAAAATCTCTACAAGAACTCCTTCACTTATCACTGCCTCCAATATGATAAGACTTTACCTTTCGATGACGCGGTTGAATTTCTAGAGCTATGTGAAAGAGACAAGGCTCGGGTTCTGGTGCACTGCATGTCAGGAAAAAATAGGTCTCCAGCTATTGTTATAGCGTTTTTGATGAAATGTAAAGGTTGGAGACTTGCTCAGAGTTATCAGTGGGTGAAAGAGCGGAGACCATCTGTTGACTTAACTGAATCTGTCTATCAGCAGCTGCAAGAGTATGAGCAGAAGGTTTTTGGATTAGCAGAAAACTCCCTCCCAACCCTGCCAATCTTCCCTCCTGTTGGTCCGCCGTCTTTTAGCTTTGGCTTCCCAAAGACTGGCGACCCAGTTCCTACAACTCCATTCAACAGCATTGGTGCAACATCGATCTTTTCCCGCCCGACCATGGACATACCTTCCCACGAGTTTACATTCGGTGCTGGCCAAACTCAAAACGGTTTCTCCGCTAGCCCCTTTGGCACTAATCCACGGAACTCAACCAGCAGCAACATCCAAATGGATAGTGCTTAA 819 46.03 MRKRERENPCGVCGHYHKYEEGEVCGICGHRVPATSEKTSLQVSAFPSEILPEFLYLGSYDNASRSELLKTQGISRVLNTVPACQNLYKNSFTYHCLQYDKTLPFDDAVEFLELCERDKARVLVHCMSGKNRSPAIVIAFLMKCKGWRLAQSYQWVKERRPSVDLTESVYQQLQEYEQKVFGLAENSLPTLPIFPPVGPPSFSFGFPKTGDPVPTTPFNSIGATSIFSRPTMDIPSHEFTFGAGQTQNGFSASPFGTNPRNSTSSNIQMDSA 272
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 3297884 3300422 - CrPI670011_01g003930.1 Cre01g0393 487938
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre01g0393 272 Gene3D Protein tyrosine phosphatase superfamily 30 182 IPR029021 -
Cre01g0393 272 ProSitePatterns Tyrosine specific protein phosphatases active site. 124 134 IPR016130 GO:0016311(InterPro)
Cre01g0393 272 Pfam Dual specificity phosphatase, catalytic domain 55 179 IPR000340 GO:0016311(InterPro)
Cre01g0393 272 MobiDBLite consensus disorder prediction 238 272 - -
Cre01g0393 272 ProSiteProfiles Tyrosine specific protein phosphatases domain profile. 103 171 IPR000387 GO:0016311(InterPro)
Cre01g0393 272 FunFam Protein-tyrosine-phosphatase IBR5 36 186 - -
Cre01g0393 272 PANTHER PROTEIN-TYROSINE-PHOSPHATASE IBR5 1 271 IPR044212 GO:0005634(PANTHER)|GO:0009734(InterPro)|GO:0009738(InterPro)|GO:0033549(InterPro)|GO:0033549(PANTHER)|GO:0043407(InterPro)
Cre01g0393 272 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 47 181 IPR029021 -
Cre01g0393 272 MobiDBLite consensus disorder prediction 240 272 - -
Cre01g0393 272 SMART dsp_5 46 179 IPR020422 GO:0006470(InterPro)
Cre01g0393 272 CDD DSP_plant_IBR5-like 47 176 - -
Cre01g0393 272 ProSiteProfiles Dual specificity protein phosphatase domain profile. 46 182 IPR020422 GO:0006470(InterPro)
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre01g0393 K04459 - csv:101211000 518.079