Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre01g0408 ATGTCGATCTCTTCTCCCTCCGACTCCTTCATTGACTCTCACTTACTCTGTGACGAGGACTCCTCCGGTATTTTGTCCGGAGAGTCGCCGGAGTACTCCTCTGACCTTGAATCGCCGGCCAGCAGTGAGGATTCTATCGCTACTTTCATAGAGGACGAGAGACACTTCGTTCCTGGAATTGATTACTTGTCGCGCTTTCAGTCTCAATCGCTCGATTCTTCCGCAAGAGCCGACTCTGTTGCATGGATTCTCAAGGTTCAAGCATATTACGGTTTTCAACCACTCACTGCATACCTTTCCGTCAACTACTTGGATCGATTCCTTTATTCTCGCCGCTTGCCGGAAACAAATGGGTGGCCATTGCAGCTTCTTTCAGTGGCTTGTTTATCACTTGCAGCTAAAATGGAGGAACCCATTGTTCCTTCATTCGTGGATCTGCAGATTGAAGGAGCAAAATATATATTTGAACCTAGAACAATACGTAGGATGGAGCTTCTTGTGCTGACAACTTTGAATTGGCGGCTCCGATCCGTAACACCTTTCAGCTTTATCGGATTCTTCGCCTACAAAGTTGATCCCACCGGAACATTTTCCAGTTTTCTCAACTCACGCTCCACGGAAATTATTCTCTCCAATATTCGAGACGCTACCTTTCTTGAGTACTGGCCTTCTTGCATTGCTGCCGCTGCCTTACTCTGTGCGGCAAATGAAATACCCAATTTGACCCTCTTGGATCCTGAACAGGCCGAGTCTTGGTGCAATGGACTCAGCAAAGATAAAATTGTCGGGTGTTATCAGCTAATGCAACCGTTAACAGCGGAGAGTCATCGGAGGAAGCCGCCGAAAGTGATACCACAGCTCCGAGTCAGAATCCGAGCCGGGTTGAGATATAGTGACTCGTCATCCTCCTCCTCCTCATCAAGGTTACCTTTTAAAAGAAGGAAGTTAAATAATTGCTTGTGGGTAGAAGATGACAAAGAAAATTCCAAGTTTAGAGCAGACGAATAA 1008 46.53 MSISSPSDSFIDSHLLCDEDSSGILSGESPEYSSDLESPASSEDSIATFIEDERHFVPGIDYLSRFQSQSLDSSARADSVAWILKVQAYYGFQPLTAYLSVNYLDRFLYSRRLPETNGWPLQLLSVACLSLAAKMEEPIVPSFVDLQIEGAKYIFEPRTIRRMELLVLTTLNWRLRSVTPFSFIGFFAYKVDPTGTFSSFLNSRSTEIILSNIRDATFLEYWPSCIAAAALLCAANEIPNLTLLDPEQAESWCNGLSKDKIVGCYQLMQPLTAESHRRKPPKVIPQLRVRIRAGLRYSDSSSSSSSSRLPFKRRKLNNCLWVEDDKENSKFRADE 335
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 3444174 3446244 + CrPI670011_01g004080.1 Cre01g0408 487953
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre01g0408 335 SMART cyclin_7 81 169 IPR013763 -
Cre01g0408 335 ProSitePatterns Cyclins signature. 76 107 IPR048258 -
Cre01g0408 335 CDD CYCLIN_AtCycD-like_rpt2 178 268 - -
Cre01g0408 335 Pfam Cyclin, C-terminal domain 178 279 IPR004367 -
Cre01g0408 335 PANTHER CYCLINS 35 272 IPR039361 GO:0000079(PANTHER)|GO:0000307(PANTHER)|GO:0005634(PANTHER)|GO:0005737(PANTHER)|GO:0016538(PANTHER)|GO:0044772(PANTHER)
Cre01g0408 335 SUPERFAMILY Cyclin-like 39 175 IPR036915 -
Cre01g0408 335 Gene3D - 59 176 - -
Cre01g0408 335 CDD CYCLIN_AtCycD-like_rpt1 75 173 - -
Cre01g0408 335 Gene3D - 49 239 - -
Cre01g0408 335 Pfam Cyclin, N-terminal domain 45 176 IPR006671 -
Cre01g0408 335 SMART Cyclin_C_2 178 311 IPR004367 -
Cre01g0408 335 SUPERFAMILY Cyclin-like 160 277 IPR036915 -
Cre01g0408 335 FunFam D2/4-type cyclin 59 176 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre01g0408 Cre-Chr1:3444174 Cre05g2672 Cre-Chr5:37693389 6.00E-124 dispersed
Cre01g0408 Cre-Chr1:3444174 Cre04g1465 Cre-Chr4:33446872 1.60E-47 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre01g0408 K18810 - csv:101210686 616.305