Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre01g0411 ATGCTTTCCATTTTGGTTCTTCAGTTCGCGCTGTGGCCGTTGTTACTTGTTAGTCGCATATCATCTTCTTCTTATGTAAGCATTCTTCACAATAATCCAACAGATTTACCAGATGTCTTCATCGCTCTGTTCCTCAATTCGGCCATTGCCACCGCACTACTGGCCGCGGAAGAACTTCAGATTCTTCCTATTGCTTCAATCAAACAGATGCATTTGCTTCGCACCTCGCTTCGTTGCTTGCTCGAACAACGACGACTGGCTTTCGATCCTGCGGAGGATCTGTACGGACTTGGCATCGATTTAAAACCTAGGTATGTAGCTTCTAGGGCACCTGAACCCAGGTCCTGGTTTGGCCCAAATGGTCAGTATATTAAAGAGTTACCATGTCCAAGTTGCCGAGGTAGGGGCTATGCGCCGTGTACGGAATGTGGAATTGAAAGATCCCGTGCTGATTGTTCCGTGTGTAATGGAAAGGGTATAGTGACCTGCCACCAATGTCTGGGGGATCGTGTCATATGGGAAGAGTCTATTGATGAACGACCATGGGAGAAAGCACGCTCCACTTCTCCGTTAAGAATGAAGGAAGATGATGAAGTCGATAACTTGGAAATAAAGCTGGAAGAAAAGAAGAAATCAAAGCGTGTTTACCAATCCCCTCCTCCTGAAGTTGGTTTAAAGATCAGTCGATCATTAAAAAGTCTCAATGCCAAAACAGGTATATTTAGTAAGAGAATGAAGATTATCCATCGTGACCCTGCTCTTCATGCCCAGAGAGTGGCTGCAATTAAGAAAGCTAAAGGAAGTGCTGAAGCAAGAAAACGTACTTCTGAAGCTTTGAAAGCATTCTTTAACGATCCAGAAAATCGTCGAAAGCGGAGCATTGCAATGAAAGGAGTAAAATTTTACTGCAAAAACTGCGGCCGTGAAGGACATCGAAGACACTATTGTCCAGAACTTAAGGAAGCAATTGATAGGCGATTCAGATGTCGAGTATGTGGAGAGAAGGGCCATAACCGGAGGACTTGTGAGAAGTCTAGGTCGAATAGTATACCGATGACCGCAACAATTCAGCGCCATTGCGGGATATGCGGTGTGAAGGGCCACAACAGGAGGAACTGTCAGAAGTCCAAGTTGAGCAATCCAACTAACCTACGAATAAATTATGCGCATCGTCGGAGCAGTCGCAATGTGTTGAGGCTGAATTTGATCAGTGAAAATAGCAGAGTGAGGCAGTATCATTGTAGGATCTGCAATAAAAACGGTCACAGTCAGCAGAAATGTCCCAATATTGATAGGAAAGGCCAAAGCAGTGCTCGGGAAAAGATCAGGATGCCATGGATCACTCATTTGAATGTATCCTTGTCCTAG 1368 44.88 MLSILVLQFALWPLLLVSRISSSSYVSILHNNPTDLPDVFIALFLNSAIATALLAAEELQILPIASIKQMHLLRTSLRCLLEQRRLAFDPAEDLYGLGIDLKPRYVASRAPEPRSWFGPNGQYIKELPCPSCRGRGYAPCTECGIERSRADCSVCNGKGIVTCHQCLGDRVIWEESIDERPWEKARSTSPLRMKEDDEVDNLEIKLEEKKKSKRVYQSPPPEVGLKISRSLKSLNAKTGIFSKRMKIIHRDPALHAQRVAAIKKAKGSAEARKRTSEALKAFFNDPENRRKRSIAMKGVKFYCKNCGREGHRRHYCPELKEAIDRRFRCRVCGEKGHNRRTCEKSRSNSIPMTATIQRHCGICGVKGHNRRNCQKSKLSNPTNLRINYAHRRSSRNVLRLNLISENSRVRQYHCRICNKNGHSQQKCPNIDRKGQSSAREKIRMPWITHLNVSLS 455
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 3485578 3494300 - CrPI670011_01g004110.1 Cre01g0411 487956
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre01g0411 455 Gene3D - 300 351 - -
Cre01g0411 455 ProSiteProfiles Zinc finger CCHC-type profile. 328 344 IPR001878 GO:0003676(InterPro)|GO:0008270(InterPro)
Cre01g0411 455 PANTHER ZINC FINGER CCHC DOMAIN CONTAINING PROTEIN 121 379 IPR051714 GO:0003727(PANTHER)|GO:0003729(PANTHER)|GO:0005737(PANTHER)|GO:0045182(PANTHER)|GO:2000767(PANTHER)
Cre01g0411 455 SUPERFAMILY Retrovirus zinc finger-like domains 406 435 IPR036875 GO:0003676(InterPro)|GO:0008270(InterPro)
Cre01g0411 455 Gene3D - 353 441 - -
Cre01g0411 455 Coils Coil 192 212 - -
Cre01g0411 455 SUPERFAMILY Retrovirus zinc finger-like domains 300 346 IPR036875 GO:0003676(InterPro)|GO:0008270(InterPro)
Cre01g0411 455 ProSiteProfiles Zinc finger CCHC-type profile. 303 318 IPR001878 GO:0003676(InterPro)|GO:0008270(InterPro)
Cre01g0411 455 SMART c2hcfinal6 413 429 IPR001878 GO:0003676(InterPro)|GO:0008270(InterPro)
Cre01g0411 455 SMART c2hcfinal6 302 318 IPR001878 GO:0003676(InterPro)|GO:0008270(InterPro)
Cre01g0411 455 SMART c2hcfinal6 359 375 IPR001878 GO:0003676(InterPro)|GO:0008270(InterPro)
Cre01g0411 455 SMART c2hcfinal6 328 344 IPR001878 GO:0003676(InterPro)|GO:0008270(InterPro)
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre01g0411 - - - 0.0