Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre01g0412 ATGGCTTCCAACACTTTGATGAGCTGTGGCATTGCCACCACCGCCTTCCCTTCAGTCCTTTCCTCCTCTAAGTCTAAATTCGCCGCCGCTGTCCCGATTTCTGGCGTCGCCGTCAATGCATCATCCCGATTTTCCATGTCCGCCGAGTGGATGCCCGGCCAGCCCCGCCCTCCCTACCTCGACGGCTCCGCCCCCGGTGATTTTGGGTTCGACCCTCTTCGGCTGGGAGAAGTGCCGGAGAACCTCGAGAGATTCAAGGAGTCTGAGCTAATTCACTGCAGATGGGCCATGCTTGCTGTTCCAGGGATTTTGGTACCTGAGGCTTTGGGATTGGGCAACTGGGTGAAAGCTCAAGAATGGGCAGCAATTCCAGGAGGCCAAGCTACATACTTGGGGCAACCAGTTCCATGGGGAACTTTGCCCACCATTTTGGTCATTGAGTTCCTTGCCATTGCCTTTGTAGAACACCAGCGCAGCATGGAGAAAGACCCTGAGAAGAAGAAGTACCCAGGAGGTGCTTTTGACCCATTAGGCTACTCAAGAGACCCTGAAAAGTTGAAGGAATACAAAATCAAAGAGATCAAAAACGGTCGGTTGGCGCTATTGGCTTTTGTTGGGTTCTGTGTGCAACAATCAGCATACCCAGGAACAGGGCCACTGGAGAACTTGGCAACTCACTTGGCTGACCCATGGCACAACAACATTGGCGATATTATCATCCCCAGATCGATTTCGCCTTGA 741 52.77 MASNTLMSCGIATTAFPSVLSSSKSKFAAAVPISGVAVNASSRFSMSAEWMPGQPRPPYLDGSAPGDFGFDPLRLGEVPENLERFKESELIHCRWAMLAVPGILVPEALGLGNWVKAQEWAAIPGGQATYLGQPVPWGTLPTILVIEFLAIAFVEHQRSMEKDPEKKKYPGGAFDPLGYSRDPEKLKEYKIKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNIGDIIIPRSISP 246
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 3497783 3499382 - CrPI670011_01g004120.1 Cre01g0412 487957
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre01g0412 246 FunFam Chlorophyll a-b binding protein, chloroplastic 51 237 - -
Cre01g0412 246 Pfam Chlorophyll A-B binding protein 57 211 IPR022796 -
Cre01g0412 246 PANTHER CHLOROPHYLL A/B BINDING PROTEIN 12 235 IPR001344 GO:0009416(PANTHER)|GO:0009765(InterPro)|GO:0009768(PANTHER)|GO:0016020(InterPro)
Cre01g0412 246 SUPERFAMILY Chlorophyll a-b binding protein 40 240 - -
Cre01g0412 246 Gene3D Chlorophyll a/b binding protein domain 51 237 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre01g0412 Cre-Chr1:3497783 Cre04g0814 Cre-Chr4:26817728 3.90E-40 dispersed
Cre01g0412 Cre-Chr1:3497783 Cre06g2478 Cre-Chr6:32560685 1.50E-39 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre01g0412 K08907 - csv:101211428 489.96