Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre01g0417 ATGCTCAAAGCCGCAGCAGCTGGAACATACACCGCCGGCGAAAGTCACTGGGCAGCAGTGAACAGTGGCGTTCGCCGGAGAAGTCCCGCTTTGATGGCTCGACGAGTCATCTACTTAAAAGAACCTTCCCCACAGTACGCCTTTTCAATAGCAATATTGAGTAGGATGACCAATCAGTTGAGAAGTAGTGTAAACCGAAGGCGAGACTTCACAGACAAGTATAAGTGGAAGAAGCAAAGGATAATCCAGTCTGCTGAGGAGGAGATTGAATCAAAGTTTGGATTCAATCTCTTCTCTGAAGGCGACAAGAGACTTGGATGGTTGCTCACTTTTACTCCTTCATCTTGTAAGGATGAGGATACTGAAAAAGTCTACAGTTGTATTGATCTTTATTTTGTCACACAGGATGGCAGCAGTTTCAAATCGAAATATAAGTTTCGTCCTTATTTTTATGCAGCCACAAAGGATAAAATGGAAACTGATGTGGAGGATTATTTGAGACGACGTTATAAAGGTCAAATAGCTGATATCGAGATTTTAGAAAAAGAAGACCTTGATCTTACAAATCATTTGTCGGGATTGCACAAGGCATATTTAAAGCTATCCTTTGACGCTGTTCAAGAATTGATGAATGTAAAGAGTGAATTATTGCATGTTGTTGAAAGCAATAGGGAGAAGTCTGATGCTGCAGAAGCATATGATTCTATTTTATTTGGGAAAAGAGAACAGAGGTCTCAAGATTTTCTAGAATGTATTGTTGATCTTCGAGAGTATGATGTTCCTTACCACGTTCGCTTTGCTATTGATCACGATTTGCGGTGTGGACAGTGGTATGATGTCAGTGTAGCAAGCACTGGTATTACTCTTGAGAAGAGAAAAGATCTCCTGCAACGTGCTGAAGTTCGGATATGTGCATTCGATATTGAGACCACAAAACTACCACTGAAATTTCCAGATGCTGAATATGACATGATAATGATGATTTCCTATATGGTTGATGGACAAGGGTACTTGATTATCAACAGAGAGTGTGTTGGAGAAGATATTGAGAATTTGGAATACACTCCAAAACCAGAATATGAAGGGTTCTTCAAAGTGAGCAATGTGAAAAATGAGTTAGAGCTTCTCAAACTTTGGTTTGCCCATATGCGAGAGCTGAAACCTGGTATCTACGTCACCTATAACGGTGACTATTTTGACTGGCCATTTCTTGAAAGCAGAACAGCATATCATGGGCTTAAAATGAGTGATGAAGTAGGATTTCAATGTGACAAGAATCAGGGAGAATGTCGTTCAAAATTTGCTTGTCATTTGGATTGCTTTGCCTGGGTAAAGCGTGATAGTTATCTTCCTCAAGGTAGCCATGGTTTGAAGGCTGTCACAAAAGCGAAGCTGGGGTACGATCCTCTTGAAGTGAATCCAGAGGATATGGTGCGGTTTGCAAAGGAAAAACCTCAGATGATGGCTTCCTATTCCGTTTCAGATGCTGTTGCTACATACTACTTGTACATGACCTATGTTCATCCTTTCATTTTTTCTCTAGCAACTATCATTCCAATGTCACCCGATGAGGTGTTGCGCAAGGGAAGTGGGACGCTTTGTGAAATGCTTTTAATGGTTCAGGCTTACGAGGCTAATGTCGTGTGTCCTAACAAACATCAATCAGATCCAGAAAAGTTCCATAACAATCGGCTTCTTGAAAGTGAGACATACATAGGTGGTCATGTAGAATGTCTAGAGAGTGGTGTATTTAGATCTGACCTTCCTACCAGTTTTAGACTTGATTCATCTGCTTATGATCAATTGATAAACAATCTAGATCGAGATTTGCAGTATGCCATTCAAGTAGAAGGAAAGATGGACTTGGAATCGGTGTCAAACTATAGTGATGTGAAGAATGCTATTATGGAAAAGCTTATTCGATTGCGGGATGAGCCTATGCGTGAAGAGTGCCCTCTGATCTATCACCTTGATGTAGCTGCAATGTATCCTAACATCATTTTAACAAATAGGCTTCAGCCGCCATCAGTAGTAACAGATGAGGTTTGCACTGCTTGTGATTTCAACCGTCCTGGAAAAACTTGTCTACGAAAACTTAAATGGGTTTGGCGTGGAGAGGTATTCATGGCTAAAAGAAGCGACTATTATCATCTGAAGAGGCAAATTGAGTCTGAGTTTGTCGATAGTGGTAATGTTCGAGTGTCAAAACAATTTCTTGAACTTCCGAAGTTGGAGCAACAAGCAAAACTGAAAGAGCGTTTAAAGAAATACTGTCAGAAGGCTTACAAACGGGTACTTGATCCAGTCACTGAAGTTCGAGAAGCGGGGATCTGTATGAGGGAAAACTCCTTCTATATCGACACTGTTCTTTTCGAGATAGAAGATATGAATACAAAGGGCTCAATAAAGTTTGGAAGGAAACTATCAGAAGCTAAAGCAAGTGGAAATTCAATCAAGATCCAGGAAGCCCAAGACATGGTGGTTCTGTATGATTCTTTACAACTTGCTCATAAATGTATCCTTAACTCCTTTTATGGATATGTGATGCGAAAGGGTGCTCGTTGGTATTCAATGGAAATGGCTGGGGTTGTTACATATACTGGAGCAAAAATCATTCAGAATGCTCACCTGCTAATTAAGAAAATTGGAAAACCACTAGAGTTAGACACTGATGGTATCTGGTGTGCACTACCTGGATCATTCCCGGAGAACTTTACCTTTAAAACAAAAGACTTGAAGAAGTTGACAATTTCATATCCATGTGTTATGCTTAATGTTGATGTGGCAAAGAACAACACAAATGATCAGTACCAAACACTTGTAGATCCTGTGAGGAAAATATATGAAACGCGAAGCGAATGCTCAATTGAATTTGAAGTCGATGGACCGTACAAGGCAATGATCCTTCCTGCCTCCAAGGAAGAAGGCATTTTGATCAAGAAGAGATATGCTGTCTTCAATGATGATGGAACCCTTGCAGAGCTGAAAGGCTTTGAGATCAAGCGTAGGGGGGAGTTAAAGCTCATCAAAGTTTTCCAGGCTGAACTTTTTGACAAGTTTCTTCATGGTTCCACCTTAGAGGAATGCTATTCAGTTGTTGCATCTGTTGCAAATCGCTGGCTTGATCTTCTAGATAGTCAAGGAAAAGATATTGCAGATAGTGAGTTGCTTGATTATATATCTGAATGTAGTACCATGAGCAAGTCTTTGGCAGACTATGGAGAGCAAAAGTCTTGTGCTGTTACCACTGCAAAACGTCTTGCTGATTTTCTTGGTGATACAATGGTCAGGGATAAAGGCCTTCGATGTCAATACATAGTTGCATGCGAACCCAAGGGAACACCTGTAAGTGAGCGTGCTGTTCCTGTTGCTATATTTGAGACTGATCAAGAGATAATGAAATTTTATGTACGCAAATGGTGCAAAATTTCATCAGAAGTTGGCATTCGATCCATCATCGACTGGTCCTACTACAAACAACGCCTAAGCTCAGCCATTCAAAAAATTATAACAATTCCAGCTGCCATGCAAAAGGTTTCAAATCCTGTCCCTAGGGTGGTCCATCCTGATTGGTTACATAAGAAAGTTCGTGAGAAGGATGATAAATTTTGCCAACAGAAAATAGTCGATATGTTTGCCTCAAGCAGAGGTAAATATTCAGAAAATAATGGTGGTGCTAGCAGCAGCAAACATGTGATGAACAGTGAAAATTCTGATGATATAGAAGACTTTCAAAAGAAAACTAGTGCCACAAATGGCCCCAAACCAGTTGTTCGAAGTTACAATGTTACAGCCATGAAACATTCGGTTAGAAAAGATAGCCAAGTAGATTCCATGATGCAAGAAAAGTGTAAGGGTGTAGGATGCGATCCTTCTTCACCATTACATTTCAAAGACATTGATAGAAATGTGGATTACCACGGATGGCTTGAAATGAAGAAACGAAAGTGGAGGAATATTTTGGACAAGAGGAAGAGACAAAGATTGGTAGATTTGAGGACTCCACTTCCTGCTAACGGTGTTCCACGGGAGTTGAATTACGCTATGAACGATAAAGAGGCTCTTGGAATAACAGGCGTTGGTTTGTATTTTAAGAGGCACGAAAAATCTATAACACATTGTCATTGGCAGATTTTACAGCTTGTTCATAGTTCACAGAGTGGCCAATATTTTGCTTGGGCTGTTGTTGAAGGAGTTATGCTAAAGATTCCTATTACTGTTCCTAGAGTATTTTACATCAATTCTAAATTACCCATTACAGAAGGATTTGTTGGTAGGCGTGTTATCAAAACCCTTCCGCATGGAACGCACATCTATAACCTTTATGAGGTTGTGACTGATGAAGGTGAATTTAGGACACAGAGTAATAAACTTGCTGCCCTCCTTGCAGATCCAGAAGTTGAGGGCATCTATGAAAGCAAGGTATCATTGGAGTTCAAGTCCATCCTCCAGATTGGTTGTGTCTGTAAAGTTGATAAAACTGCTAAAAAACGAAACATTCAAGACGGGTGGAATCTGGATGAACTGCAAATGAAAACTACAACAGAATGCAGTTATCTCGAAAAGCTAACCTCTTTCTTCTATGTGTATAATAGCATTTCTGAAGGAGGAGATATCTACATTACCTATTTTCCTGCCACAAAATTCATACTTGTGGTGGTGGTTACTTCTTACCGAAACAAAGACTTGTCATCAAATTTTCTCGAAAGGAAATTTTGTGAAGCTTGTCAAATGCTCTCTGGTCAATCACAACCCCCTAAGAGTGGTATAGCTTACAAGGTTGACTATGTTGTAGACATCAAAGAAGCTGAAGTGATTTTGCAAAAGTCAATAACAGAATACAGGAGCACAAACCGTGGACCTACTGTTGCTATAATTGAGTCCCCAAATGTGCAGCTTCTGAAGTCAGTTGTGAAAGTATTAGACGATTTTCCATGCTTGAACATCCCTTATGATGCTCATCATAGTCAATATCAGTTTCTTGGTTGGCAACAAAAAGCTGCTGAGATTGGAATGCGACAGTGTGCTAATTCATCCCAATGGTTGAATAATAGAATCTCTCTTGCAAGATATGCCCATGTACCTTTGGGAAATATTGAACCTGATTGGAAAATTTTTACAGCAGATATTTTCTTTTCAAGGGCATTACATGATCAACAACAGGTCCTTTGGATATCAGATGACGGTGTTCCAGATATAGGAGGCAATAATTTCGAAGACGTTTGTTTAGTCGATGAGGTTCAACAGCCTATCCGGAATTGCTCTGGTGCATACAGAAAAATTTCTGTGGAGCTAAAGATCCATCATTTGGCTGTGAATGCTCTGCTGAAGAGCAACCAAGTGAATGAAATGGAAGGAGGTGGCTTTGATGAGGCTGAATCATATGCCCCAGCATTTCCTGTCCTGAAACAATTGATTCAAAGATGTCTTGCAGATGTAGCTACATCTGGAAATGTTTATGCTGATGAAATTTTGTTGCATCTGTACCGTTGGATTTGCAGGCCCCAATCAAGGCTTCATGACCCAGCTCTTCATCGCTTGCTTCACAAGGCAATGCAAAAGGTGTTTGCTCTTTTGTTGGCTGCACTACACAAATTAGGTGCCACCATTATTTTTGCAAACTTCTCAAAAGTTGTCATAGACACGGGAAAGTCTGATCTTTCTGCTGCTAAGGCATACTGTGATAGCTTGCTGAAAACACTGCAAACAAGGGACCTGTTTGAGTGGATTGAGCTGATACCAGTACAGTTCTGGCACTCCCTGTTATTTATGGATCAGTACAACTATGGTGGAATTTCAGCAAAAGATAATGAAATTACAGATGCTAAATCCCAAGTTAAAATATTGTCCAACTGGAAGATTGCTGAATATCTACCTAAGAAGATTCAGGATTGTTTTATTACGATCATTTCTCAATTTATATACATTCCATGGATATATGCAACCAAACAAGCTGTAGCAAGAGCGTCGTTGCAGCAGGCCGACACGTGTACCCCGTCTTTTGAATCACACGTGACAGAACATCTCAAAGAGCAGTTGAGTTCTTACTTCAGCAACCATCTGTTTGGGATTGTTGATGATATTTTACATAAACGACCTTCTGATCGTGTCCATAAAGAAGATGCTGCATTGAAATTCATTAATTACGTCTGTGCTGCTTTGGAACTTGACCAAAATGTTCGGGATGATGTTCGGAAAATGAAGAAGAATTTACTGAAGTATATGCATGTGAAAGAGTTTGCACCAGAAGCTCAGTTTTCTTATCCATGCACTTCCTTCATCTTACCCAATGTCTTTTGCAGCTATTGCAATGATTGTAGAGATTTGGACTTGTGCCGTGACTCAGATTTACAAGCACAAGAATGGCGGTGTGGTGTGGCAGAATGTGGACAACCATATAACCAAGAATTGATTGAGAATGCTCTTATTCAAATTGTGATGCAAAGAGAGCGTGCATATCACGTGCAGGATTTGGTTTGTGGTAGGTGCAAACAGGTCAAAGCTGCTCATTTGTGGGAACAATGTGCCTGTGCTGGCACATTTCAGTGCAAAGAAGATGCCAAGGAGTTTTTGAGCAGCATGAGGCAAGAGTTCATCTCGACTATCTTGTTAAATGATTGA 6621 40.24 MLKAAAAGTYTAGESHWAAVNSGVRRRSPALMARRVIYLKEPSPQYAFSIAILSRMTNQLRSSVNRRRDFTDKYKWKKQRIIQSAEEEIESKFGFNLFSEGDKRLGWLLTFTPSSCKDEDTEKVYSCIDLYFVTQDGSSFKSKYKFRPYFYAATKDKMETDVEDYLRRRYKGQIADIEILEKEDLDLTNHLSGLHKAYLKLSFDAVQELMNVKSELLHVVESNREKSDAAEAYDSILFGKREQRSQDFLECIVDLREYDVPYHVRFAIDHDLRCGQWYDVSVASTGITLEKRKDLLQRAEVRICAFDIETTKLPLKFPDAEYDMIMMISYMVDGQGYLIINRECVGEDIENLEYTPKPEYEGFFKVSNVKNELELLKLWFAHMRELKPGIYVTYNGDYFDWPFLESRTAYHGLKMSDEVGFQCDKNQGECRSKFACHLDCFAWVKRDSYLPQGSHGLKAVTKAKLGYDPLEVNPEDMVRFAKEKPQMMASYSVSDAVATYYLYMTYVHPFIFSLATIIPMSPDEVLRKGSGTLCEMLLMVQAYEANVVCPNKHQSDPEKFHNNRLLESETYIGGHVECLESGVFRSDLPTSFRLDSSAYDQLINNLDRDLQYAIQVEGKMDLESVSNYSDVKNAIMEKLIRLRDEPMREECPLIYHLDVAAMYPNIILTNRLQPPSVVTDEVCTACDFNRPGKTCLRKLKWVWRGEVFMAKRSDYYHLKRQIESEFVDSGNVRVSKQFLELPKLEQQAKLKERLKKYCQKAYKRVLDPVTEVREAGICMRENSFYIDTVLFEIEDMNTKGSIKFGRKLSEAKASGNSIKIQEAQDMVVLYDSLQLAHKCILNSFYGYVMRKGARWYSMEMAGVVTYTGAKIIQNAHLLIKKIGKPLELDTDGIWCALPGSFPENFTFKTKDLKKLTISYPCVMLNVDVAKNNTNDQYQTLVDPVRKIYETRSECSIEFEVDGPYKAMILPASKEEGILIKKRYAVFNDDGTLAELKGFEIKRRGELKLIKVFQAELFDKFLHGSTLEECYSVVASVANRWLDLLDSQGKDIADSELLDYISECSTMSKSLADYGEQKSCAVTTAKRLADFLGDTMVRDKGLRCQYIVACEPKGTPVSERAVPVAIFETDQEIMKFYVRKWCKISSEVGIRSIIDWSYYKQRLSSAIQKIITIPAAMQKVSNPVPRVVHPDWLHKKVREKDDKFCQQKIVDMFASSRGKYSENNGGASSSKHVMNSENSDDIEDFQKKTSATNGPKPVVRSYNVTAMKHSVRKDSQVDSMMQEKCKGVGCDPSSPLHFKDIDRNVDYHGWLEMKKRKWRNILDKRKRQRLVDLRTPLPANGVPRELNYAMNDKEALGITGVGLYFKRHEKSITHCHWQILQLVHSSQSGQYFAWAVVEGVMLKIPITVPRVFYINSKLPITEGFVGRRVIKTLPHGTHIYNLYEVVTDEGEFRTQSNKLAALLADPEVEGIYESKVSLEFKSILQIGCVCKVDKTAKKRNIQDGWNLDELQMKTTTECSYLEKLTSFFYVYNSISEGGDIYITYFPATKFILVVVVTSYRNKDLSSNFLERKFCEACQMLSGQSQPPKSGIAYKVDYVVDIKEAEVILQKSITEYRSTNRGPTVAIIESPNVQLLKSVVKVLDDFPCLNIPYDAHHSQYQFLGWQQKAAEIGMRQCANSSQWLNNRISLARYAHVPLGNIEPDWKIFTADIFFSRALHDQQQVLWISDDGVPDIGGNNFEDVCLVDEVQQPIRNCSGAYRKISVELKIHHLAVNALLKSNQVNEMEGGGFDEAESYAPAFPVLKQLIQRCLADVATSGNVYADEILLHLYRWICRPQSRLHDPALHRLLHKAMQKVFALLLAALHKLGATIIFANFSKVVIDTGKSDLSAAKAYCDSLLKTLQTRDLFEWIELIPVQFWHSLLFMDQYNYGGISAKDNEITDAKSQVKILSNWKIAEYLPKKIQDCFITIISQFIYIPWIYATKQAVARASLQQADTCTPSFESHVTEHLKEQLSSYFSNHLFGIVDDILHKRPSDRVHKEDAALKFINYVCAALELDQNVRDDVRKMKKNLLKYMHVKEFAPEAQFSYPCTSFILPNVFCSYCNDCRDLDLCRDSDLQAQEWRCGVAECGQPYNQELIENALIQIVMQRERAYHVQDLVCGRCKQVKAAHLWEQCACAGTFQCKEDAKEFLSSMRQEFISTILLND 2206
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 3543371 3566592 + CrPI670011_01g004170.1 Cre01g0417 487962
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre01g0417 2206 Gene3D Palm domain of DNA polymerase 644 993 IPR023211 -
Cre01g0417 2206 PANTHER DNA POLYMERASE EPSILON CATALYTIC SUBUNIT A 65 2190 IPR029703 GO:0000278(PANTHER)|GO:0003677(PANTHER)|GO:0003677(InterPro)|GO:0003887(InterPro)|GO:0003887(PANTHER)|GO:0006260(InterPro)|GO:0006272(PANTHER)|GO:0006281(InterPro)|GO:0006287(PANTHER)|GO:0006297(PANTHER)|GO:0008310(PANTHER)|GO:0008622(InterPro)|GO:0008622(PANTHER)|GO:0045004(PANTHER)
Cre01g0417 2206 FunFam DNA polymerase epsilon catalytic subunit 997 1181 - -
Cre01g0417 2206 Gene3D - 298 528 IPR036397 GO:0003676(InterPro)
Cre01g0417 2206 CDD POLBc_epsilon 563 1178 - -
Cre01g0417 2206 Pfam DNA polymerase epsilon catalytic subunit A, thumb domain 1002 1177 - -
Cre01g0417 2206 SMART polmehr3 299 899 IPR006172 GO:0000166(InterPro)|GO:0003676(InterPro)|GO:0003887(InterPro)
Cre01g0417 2206 FunFam DNA polymerase epsilon catalytic subunit 300 528 - -
Cre01g0417 2206 CDD DNA_polB_epsilon_exo 300 504 - -
Cre01g0417 2206 SUPERFAMILY DNA/RNA polymerases 546 1171 IPR043502 -
Cre01g0417 2206 Pfam Domain of unknown function (DUF1744) 1583 1932 IPR013697 GO:0003887(InterPro)|GO:0005634(InterPro)|GO:0006260(InterPro)|GO:0008270(InterPro)
Cre01g0417 2206 Gene3D - 997 1181 IPR042087 -
Cre01g0417 2206 MobiDBLite consensus disorder prediction 1217 1234 - -
Cre01g0417 2206 Gene3D DNA Polymerase, chain B, domain 1 116 292 - -
Cre01g0417 2206 SMART DUF1744_2 1567 1932 IPR013697 GO:0003887(InterPro)|GO:0005634(InterPro)|GO:0006260(InterPro)|GO:0008270(InterPro)
Cre01g0417 2206 Pfam Zinc finger domain of DNA polymerase-epsilon 2155 2195 IPR054475 -
Cre01g0417 2206 Pfam DNA polymerase family B, exonuclease domain 254 460 IPR006133 -
Cre01g0417 2206 MobiDBLite consensus disorder prediction 1217 1236 - -
Cre01g0417 2206 SUPERFAMILY Ribonuclease H-like 119 527 IPR012337 -
Cre01g0417 2206 FunFam DNA polymerase epsilon catalytic subunit 811 993 - -
Cre01g0417 2206 FunFam DNA polymerase epsilon catalytic subunit 116 287 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre01g0417 Cre-Chr1:3543371 Cre02g2512 Cre-Chr2:38380380 0.00E+00 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre01g0417 K02324 - csv:101208568 3566.93