Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre01g0429 ATGGGGAAGAGGGGGGGCTGGTTTTCTGCTGTGAAGAAAGCATTTGCTCCTGAATCTAAGGAAAAGAAAGATCAGAAAACCAACAAATCAAAGAAAAGATGGTTTGGGAAGCCAAAGAAATTGGAGACAGTGGCATCTGCAGAGCCAGCTTCATTAGATGTGTCTGTTCTACCAATTGAAGAGGTGAAACTAGCAGATGCAGAGAATGAACAAAGCAAACATGCTTACTCTGTTGCCATTGCCACTGCAGTCGCTGCCGAGGCGGCTGTTGCAGCAGCTCAGGCTGCGGCGGAGGTCGTTCGGCTCACTACCATCCCTCGGTACTCCGGGAAATCAAAGGAAGAAATAGCAGCCATCAAGATCCAGACTGCATTCCGTGGCTATATGGCAAGGAGGGCCCTGCGGGCATTAAGAGGGTTGGTGAGGCTAAAGTCATTGATACAAGGCCAATCTGTTAAAAGACAAGCAACAACCACATTAAGATGCATGCAGACTCTTGCTCGTGTGCAGTCACAGATTCGTGCAAGAAGAATTAGAATGTCAGAGGAGAATCAGGCTCTTCAGAGGCAACTCCAACAAAAACATGAAAGAGAGCTTGAGAGATTAACTACATCTGCAAACAATGAATGGAATGACAGTACCAAATCAAAGGAGCAAATTGAAGCCAGATTAGTTAACAGGCAAGAAGCAGCAACAAGAAGAGAAAGAGCATTGGCGTATGCTTACTCTCATCAGAATTCATGGAAGAATTCTTCAAAATCTGCAAACCCTACATTCATGGACCCGAACAATCCCCGCTGGGGATGGAGTTGGTTAGAACGATGGATGGCCGCTCGTCCATGGGAGACTAAGAGCACCGTCGATTATCACGATCGTGGCTCCGTCAAGAGCGCGATCAGCCATGCAACCTCGATCGGAGACATTGCCAAAGCTTATGCCCGTCGCGATCTCAATCTCGACATCAAGCCTTTTCCAAGGACTCCAACGAGCCAAAAAACGAGCCGAGCTCCGAGTCACCAATCACCGGCGACTCCTACGAAGGCGCATTCGTCGCTATCTGCAGGGAGAAAATTGAAGCCGGATAGTCCAAGAGGAATCGGCTGGGGCGGAGACGCTGATTCCAGAAGCGCATTGAGCGTCAAATCGGAGAGGTACCGGCGACACAGCATCGCTGGATCATCGGTGAGGGATGATGAGAGCTTCACGAGTTCGCCGTCGGTTCCAAGCTACATGGCGTCCACAGAAGCAGCCAGGGCTAGGTCCCGGTTGTCGAGTCCAATGGGAACGGAGAAGACGGCGGCGTTTCCGGAGAAGGGACCGGCGAGTATCGGCGCAAAGAAACGGCTGTCGTTCCCCGCCTCGCCGGCGAATTCGAGGAGGCACTCTGGTCCGCCGAAAATAGACGCTAGTCCGATCAAGAATGTTGCAGAGAGAGATTTTACCGGCGAGAGCAGATAG 1458 50.89 MGKRGGWFSAVKKAFAPESKEKKDQKTNKSKKRWFGKPKKLETVASAEPASLDVSVLPIEEVKLADAENEQSKHAYSVAIATAVAAEAAVAAAQAAAEVVRLTTIPRYSGKSKEEIAAIKIQTAFRGYMARRALRALRGLVRLKSLIQGQSVKRQATTTLRCMQTLARVQSQIRARRIRMSEENQALQRQLQQKHERELERLTTSANNEWNDSTKSKEQIEARLVNRQEAATRRERALAYAYSHQNSWKNSSKSANPTFMDPNNPRWGWSWLERWMAARPWETKSTVDYHDRGSVKSAISHATSIGDIAKAYARRDLNLDIKPFPRTPTSQKTSRAPSHQSPATPTKAHSSLSAGRKLKPDSPRGIGWGGDADSRSALSVKSERYRRHSIAGSSVRDDESFTSSPSVPSYMASTEAARARSRLSSPMGTEKTAAFPEKGPASIGAKKRLSFPASPANSRRHSGPPKIDASPIKNVAERDFTGESR 485
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 3658142 3661425 + CrPI670011_01g004290.1 Cre01g0429 487974

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cre01g0429 485 MobiDBLite consensus disorder prediction 324 351 - -
Cre01g0429 485 MobiDBLite consensus disorder prediction 395 411 - -
Cre01g0429 485 Coils Coil 177 197 - -
Cre01g0429 485 PANTHER IQ-DOMAIN 5-RELATED 6 438 - -
Cre01g0429 485 SMART iq_5 113 135 IPR000048 GO:0005515(InterPro)
Cre01g0429 485 ProSiteProfiles IQ motif profile. 114 142 - -
Cre01g0429 485 Gene3D iswi atpase 111 149 - -
Cre01g0429 485 MobiDBLite consensus disorder prediction 377 394 - -
Cre01g0429 485 MobiDBLite consensus disorder prediction 1 35 - -
Cre01g0429 485 MobiDBLite consensus disorder prediction 320 485 - -
Cre01g0429 485 Pfam IQ calmodulin-binding motif 117 135 IPR000048 GO:0005515(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre01g0429 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre01g0429 Cre-Chr1:3658142 Cre04g0976 Cre-Chr4:28377469 1.80E-108 dispersed
Cre02g0579 Cre-Chr2:2840803 Cre01g0429 Cre-Chr1:3658142 1.30E-13 transposed
Cre04g1962 Cre-Chr4:37087747 Cre01g0429 Cre-Chr1:3658142 1.60E-33 transposed
Cre05g0080 Cre-Chr5:1008893 Cre01g0429 Cre-Chr1:3658142 8.10E-31 transposed
Cre06g1039 Cre-Chr6:4109017 Cre01g0429 Cre-Chr1:3658142 8.10E-30 transposed
Cre09g1774 Cre-Chr9:36133532 Cre01g0429 Cre-Chr1:3658142 8.50E-28 transposed
Cre10g1700 Cre-Chr10:31200951 Cre01g0429 Cre-Chr1:3658142 2.40E-20 transposed
Cre01g0429 Cre-Chr1:3658142 Cre10g2162 Cre-Chr10:36146258 2.00E-75 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi8g606 . . . . Bpe04g01589 . . Bma10g00020 Cmo06g00353 . . Cma07g00937 Car03g01126 Car07g00918 . Cpe10g00203 . Bhi03g01672 . . . Hepe04g0914 . . Cla04g00869 Cam04g0841 Cec04g1024 Cco04g1083 Clacu04g0929 Cmu04g0918 Cre01g0429 . . Cone13ag1287 Cone19ag1272 Lsi01g01363 Csa04g01422 Chy08g00816 Cme04g02549 Blo07g01409 Blo09g00550 Bda03g01731 Bda05g01241 . . . . Sed04g1336 . Cmo07g00981 Cma06g00359 . Car06g00308 . . Cpe19g00400 Bhi11g02125 Tan08g1905 Cmetu04g2215 . Hepe05g0240 . . Cla10g01948 Cam10g2014 Cec10g2056 Cco10g2042 Clacu10g2021 Cmu10g2771 Cre10g2162 Lsi03g02046 Csa03g03255 Chy04g02086 Cme08g02328
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cre01g0429 . 1 479 IQD Protein Family AT3G52290 54.2 2.6e-103 372.9
Cre05g2265 . 1802 2011 IQD Protein Family AT2G26410 50.7 4.8e-43 172.9
Cre03g1557 . 36 443 IQD Protein Family AT3G22190 57.8 7.9e-97 351.3
Cre05g1963 . 1 438 IQD Protein Family AT2G26180 61.6 3.8e-120 428.7
Cre04g1962 . 25 298 IQD Protein Family AT2G33990 52.1 6.1e-63 238.0
Cre07g1360 . 89 267 IQD Protein Family AT2G33990 53.3 4.0e-46 182.2
Cre04g1962 . 25 246 IQD Protein Family AT3G15050 50.5 4.6e-55 211.8
Cre07g1360 . 88 279 IQD Protein Family AT3G15050 58.2 2.5e-53 206.1
Cre09g1774 . 111 463 IQD Protein Family AT5G13460 50.1 2.6e-74 276.6
Cre06g1039 . 29 537 IQD Protein Family AT4G00820 51.3 4.0e-114 409.1
Cre03g1876 . 1 391 IQD Protein Family AT3G16490 50.5 2.5e-65 246.5
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005280 2 2 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 1 1 1 1 1 1 6 1 0 40