Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre01g0429 ATGGGGAAGAGGGGGGGCTGGTTTTCTGCTGTGAAGAAAGCATTTGCTCCTGAATCTAAGGAAAAGAAAGATCAGAAAACCAACAAATCAAAGAAAAGATGGTTTGGGAAGCCAAAGAAATTGGAGACAGTGGCATCTGCAGAGCCAGCTTCATTAGATGTGTCTGTTCTACCAATTGAAGAGGTGAAACTAGCAGATGCAGAGAATGAACAAAGCAAACATGCTTACTCTGTTGCCATTGCCACTGCAGTCGCTGCCGAGGCGGCTGTTGCAGCAGCTCAGGCTGCGGCGGAGGTCGTTCGGCTCACTACCATCCCTCGGTACTCCGGGAAATCAAAGGAAGAAATAGCAGCCATCAAGATCCAGACTGCATTCCGTGGCTATATGGCAAGGAGGGCCCTGCGGGCATTAAGAGGGTTGGTGAGGCTAAAGTCATTGATACAAGGCCAATCTGTTAAAAGACAAGCAACAACCACATTAAGATGCATGCAGACTCTTGCTCGTGTGCAGTCACAGATTCGTGCAAGAAGAATTAGAATGTCAGAGGAGAATCAGGCTCTTCAGAGGCAACTCCAACAAAAACATGAAAGAGAGCTTGAGAGATTAACTACATCTGCAAACAATGAATGGAATGACAGTACCAAATCAAAGGAGCAAATTGAAGCCAGATTAGTTAACAGGCAAGAAGCAGCAACAAGAAGAGAAAGAGCATTGGCGTATGCTTACTCTCATCAGAATTCATGGAAGAATTCTTCAAAATCTGCAAACCCTACATTCATGGACCCGAACAATCCCCGCTGGGGATGGAGTTGGTTAGAACGATGGATGGCCGCTCGTCCATGGGAGACTAAGAGCACCGTCGATTATCACGATCGTGGCTCCGTCAAGAGCGCGATCAGCCATGCAACCTCGATCGGAGACATTGCCAAAGCTTATGCCCGTCGCGATCTCAATCTCGACATCAAGCCTTTTCCAAGGACTCCAACGAGCCAAAAAACGAGCCGAGCTCCGAGTCACCAATCACCGGCGACTCCTACGAAGGCGCATTCGTCGCTATCTGCAGGGAGAAAATTGAAGCCGGATAGTCCAAGAGGAATCGGCTGGGGCGGAGACGCTGATTCCAGAAGCGCATTGAGCGTCAAATCGGAGAGGTACCGGCGACACAGCATCGCTGGATCATCGGTGAGGGATGATGAGAGCTTCACGAGTTCGCCGTCGGTTCCAAGCTACATGGCGTCCACAGAAGCAGCCAGGGCTAGGTCCCGGTTGTCGAGTCCAATGGGAACGGAGAAGACGGCGGCGTTTCCGGAGAAGGGACCGGCGAGTATCGGCGCAAAGAAACGGCTGTCGTTCCCCGCCTCGCCGGCGAATTCGAGGAGGCACTCTGGTCCGCCGAAAATAGACGCTAGTCCGATCAAGAATGTTGCAGAGAGAGATTTTACCGGCGAGAGCAGATAG 1458 50.89 MGKRGGWFSAVKKAFAPESKEKKDQKTNKSKKRWFGKPKKLETVASAEPASLDVSVLPIEEVKLADAENEQSKHAYSVAIATAVAAEAAVAAAQAAAEVVRLTTIPRYSGKSKEEIAAIKIQTAFRGYMARRALRALRGLVRLKSLIQGQSVKRQATTTLRCMQTLARVQSQIRARRIRMSEENQALQRQLQQKHERELERLTTSANNEWNDSTKSKEQIEARLVNRQEAATRRERALAYAYSHQNSWKNSSKSANPTFMDPNNPRWGWSWLERWMAARPWETKSTVDYHDRGSVKSAISHATSIGDIAKAYARRDLNLDIKPFPRTPTSQKTSRAPSHQSPATPTKAHSSLSAGRKLKPDSPRGIGWGGDADSRSALSVKSERYRRHSIAGSSVRDDESFTSSPSVPSYMASTEAARARSRLSSPMGTEKTAAFPEKGPASIGAKKRLSFPASPANSRRHSGPPKIDASPIKNVAERDFTGESR 485
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 3658142 3661425 + CrPI670011_01g004290.1 Cre01g0429 487974
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre01g0429 485 MobiDBLite consensus disorder prediction 324 351 - -
Cre01g0429 485 MobiDBLite consensus disorder prediction 395 411 - -
Cre01g0429 485 Coils Coil 177 197 - -
Cre01g0429 485 PANTHER IQ-DOMAIN 5-RELATED 6 438 - -
Cre01g0429 485 SMART iq_5 113 135 IPR000048 GO:0005515(InterPro)
Cre01g0429 485 ProSiteProfiles IQ motif profile. 114 142 - -
Cre01g0429 485 Gene3D iswi atpase 111 149 - -
Cre01g0429 485 MobiDBLite consensus disorder prediction 377 394 - -
Cre01g0429 485 MobiDBLite consensus disorder prediction 1 35 - -
Cre01g0429 485 MobiDBLite consensus disorder prediction 320 485 - -
Cre01g0429 485 Pfam IQ calmodulin-binding motif 117 135 IPR000048 GO:0005515(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre01g0429 Cre-Chr1:3658142 Cre04g0976 Cre-Chr4:28377469 1.80E-108 dispersed
Cre02g0579 Cre-Chr2:2840803 Cre01g0429 Cre-Chr1:3658142 1.30E-13 transposed
Cre04g1962 Cre-Chr4:37087747 Cre01g0429 Cre-Chr1:3658142 1.60E-33 transposed
Cre05g0080 Cre-Chr5:1008893 Cre01g0429 Cre-Chr1:3658142 8.10E-31 transposed
Cre06g1039 Cre-Chr6:4109017 Cre01g0429 Cre-Chr1:3658142 8.10E-30 transposed
Cre09g1774 Cre-Chr9:36133532 Cre01g0429 Cre-Chr1:3658142 8.50E-28 transposed
Cre10g1700 Cre-Chr10:31200951 Cre01g0429 Cre-Chr1:3658142 2.40E-20 transposed
Cre01g0429 Cre-Chr1:3658142 Cre10g2162 Cre-Chr10:36146258 2.00E-75 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre01g0429 - - - 0.0