Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre01g0458 ATGGAGCATCCCGCCGGAATGTTGAATCAGGCAAAGCCATTTATTGCAGTGATTCTTCAGCAATTCATCTCTGCCGGAATGGTCATCATTTCCAAGTTGGCTCTCAACCAAGGACTCAACCAGCACGTTTTAGTCGTCTACCGCTACACCATTGCTACCATTGTCGTCGCTCCGTTCGCTTTGGTCTTCGAGAGGAAAGTGAGACCCAAGATGACTTGGTCCATTTTTGGGAAGGTTGTGTTACTGGGACTATTGGAGCCTGCACTAGACCAAAACTTGTATTATACAGGCATGAAGTACACTACAGCAACCTTTGCATCCGCTATGACTAATATGGTCCCTGGCCTCGTCTTCCTCATGGCTTGGCTTGTTCGGCTTGAGAAGGTCGACGTAAGGCAGTTGTCGAGCCAGGCGAAGATATTAGGAACAGTGGTGGCAGTGGGAGGGGCGATGATAATGACTCTGGTAAGAGGACCAATCTTGAATCTGCCATGGACAAATCACAACCTCCATGACCATTCTGCAGCTGCAACTAACCAGCAAGATCTTCTCAAGGGTTCTCTCATGATCACTATTGGTTGTATTCTTTGGTCTGTTTTCAATGTTCTTCAGGCAATTACAGTAAAAGTATACCCAGCACAACTCTCCTTAACAGCTTTGATATGCTTCACCGGCGCCATACAAGCCTCAGTAATAGCTTTCGCAATGGAAGGGCACAAACCTGCGGCCTGGTCATTACATTTAGATTCAACCCTCTTAGCTCCTTTGTATAGTGGAATCATGTCTTCAGGGGTTTCATATACTATCCAAGCAGCAGTAATGAAAAGGAAAGGGCCAGTTTTTGCAAGTACATTTAGTCCCCTGAGCATGATTATTGTTGCAATCATTAGTTCATTCGCATTATCCGAGATATTATACTTTGGAAGGGTTATTGGAGCAGCTGTAATTATTACAGGCCTTTATTTGGTTCTGTGGGGTAAAATCAAGGATCACGCTCTATACAAATCAGATAGTGAGAAGATGGCCCCATCAGATCAGAAACTGACTGCCATAACTGACAAACCTAAGACTTCAGATAAAGAACTAGGAGTTGATCTTGCTAGGATAAAAACAGTGGATGATTCTGTTTGA 1131 44.3 MEHPAGMLNQAKPFIAVILQQFISAGMVIISKLALNQGLNQHVLVVYRYTIATIVVAPFALVFERKVRPKMTWSIFGKVVLLGLLEPALDQNLYYTGMKYTTATFASAMTNMVPGLVFLMAWLVRLEKVDVRQLSSQAKILGTVVAVGGAMIMTLVRGPILNLPWTNHNLHDHSAAATNQQDLLKGSLMITIGCILWSVFNVLQAITVKVYPAQLSLTALICFTGAIQASVIAFAMEGHKPAAWSLHLDSTLLAPLYSGIMSSGVSYTIQAAVMKRKGPVFASTFSPLSMIIVAIISSFALSEILYFGRVIGAAVIITGLYLVLWGKIKDHALYKSDSEKMAPSDQKLTAITDKPKTSDKELGVDLARIKTVDDSV 376
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 3897674 3900051 - CrPI670011_01g004580.1 Cre01g0458 488003
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre01g0458 376 SUPERFAMILY Multidrug resistance efflux transporter EmrE 47 155 - -
Cre01g0458 376 SUPERFAMILY Multidrug resistance efflux transporter EmrE 249 328 - -
Cre01g0458 376 Pfam EamA-like transporter family 185 324 IPR000620 GO:0016020(InterPro)
Cre01g0458 376 Pfam EamA-like transporter family 15 152 IPR000620 GO:0016020(InterPro)
Cre01g0458 376 PANTHER WAT1-RELATED PROTEIN 15 338 IPR030184 GO:0005886(PANTHER)|GO:0016020(InterPro)|GO:0022857(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre01g0458 Cre-Chr1:3897674 Cre07g0673 Cre-Chr7:4486908 7.20E-110 dispersed
Cre01g0458 Cre-Chr1:3897674 Cre01g0459 Cre-Chr1:3920629 6.10E-93 tandem
Cre01g0985 Cre-Chr1:15579969 Cre01g0458 Cre-Chr1:3897674 1.90E-60 transposed
Cre01g0458 Cre-Chr1:3897674 Cre04g0938 Cre-Chr4:28054495 3.80E-103 wgd
Cre01g0458 Cre-Chr1:3897674 Cre07g0671 Cre-Chr7:4455874 1.10E-110 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre01g0458 - - - 0.0