Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre01g0460 ATGGAGAAGGCAGCTGGTAGAATGTTTGAGAAGGCAAAGCCATATTTGGGAGCAATTGCATTAAGATTTGCTTCAGCAGGAATGTCAATTATTTCAAAGGCTGCTCTAAACCAAGGAATGAACCAACTTGTTACCATTGTTTATCGTTACTCTATTGGTGCCATTGTTGTTGCTCCTTTTGCTTTTGTATTGGATAGGAAAATAAGACCAAAGATGACTCTCCCGATCTTCGCCAAGATTCTTCTCCTTGGCTTACTCGAGCCTGTAATAGCCCAGAGCTTGATTTACTCTGCTACTAAATACACAACTGCTACTTTTGCAACTGCCATGTGCAATATTCTTCCTGCCTTTGCATTTCTAATGGCTTGGATTTGTAGAATGGAGAAGGTGAACATTAGAAGATTAAGAAGCCAGGCAAAGATATTAGGGACTTTAGTTACAGTTGGAGGAGCAATGATGATGGCTCTTATAAAAGGGCCTTTATTGAGTTTGCCTTGGACCAAACAAAATTTCAATAATCCTCATTCTTATTCCACTCTTCCAAATAACCAACAACCTCTTAAGGCTGCCATTGTTATCACCATTTCAAGTATTTGTTCCTCAGCCTTCACCATTCTTCTGGCACATACAATAAGAACATACCCAGCTGAGCTCACACTAACAACATTCATATGTTTGGCTGGAGCTGTGGAAAGTACTATTTTAGCCTTAGCATTTGAATGGGACAATCCATCTGCATGGGCTTTACATGCAGATTCCATACTCTTAGCTGCCCTCTATGGTGGTATAATATCTTCTGGAATTGCCTATTATCTTCAAGGAGTAGTGGTGAAGTTAAAAGGACCTGTGTTTGTAACTGCATTCAATCCTCTCAGCATGGTCATAGTTGCCGTAATTAGTTCATTCATATTCGCCGAGACACTGCGCTTAGGAAGGGTCATTGGAGCAGTTGTGATAATTATAGGCCTTTACTTGGTTTTGTGGGGCAAGAGCAAAGATAAACTTCCATTCAAAGTGGAGAATGACAATAATAATAATAATAATAATGAATTGCCAATTTCACTCCAAGACTCAACAACCACAAACCAGCAGCTGAAGCCTTTAGATCAACAATAA 1116 39.61 MEKAAGRMFEKAKPYLGAIALRFASAGMSIISKAALNQGMNQLVTIVYRYSIGAIVVAPFAFVLDRKIRPKMTLPIFAKILLLGLLEPVIAQSLIYSATKYTTATFATAMCNILPAFAFLMAWICRMEKVNIRRLRSQAKILGTLVTVGGAMMMALIKGPLLSLPWTKQNFNNPHSYSTLPNNQQPLKAAIVITISSICSSAFTILLAHTIRTYPAELTLTTFICLAGAVESTILALAFEWDNPSAWALHADSILLAALYGGIISSGIAYYLQGVVVKLKGPVFVTAFNPLSMVIVAVISSFIFAETLRLGRVIGAVVIIIGLYLVLWGKSKDKLPFKVENDNNNNNNNELPISLQDSTTTNQQLKPLDQQ 371
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 3952799 3956020 - CrPI670011_01g004600.1 Cre01g0460 488005
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre01g0460 371 SUPERFAMILY Multidrug resistance efflux transporter EmrE 48 156 - -
Cre01g0460 371 SUPERFAMILY Multidrug resistance efflux transporter EmrE 256 332 - -
Cre01g0460 371 PANTHER WAT1-RELATED PROTEIN 19 344 IPR030184 GO:0005886(PANTHER)|GO:0016020(InterPro)|GO:0022857(InterPro)
Cre01g0460 371 Pfam EamA-like transporter family 15 153 IPR000620 GO:0016020(InterPro)
Cre01g0460 371 Pfam EamA-like transporter family 188 327 IPR000620 GO:0016020(InterPro)
Cre01g0460 371 MobiDBLite consensus disorder prediction 339 371 - -
Cre01g0460 371 MobiDBLite consensus disorder prediction 340 371 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre01g0460 Cre-Chr1:3952799 Cre07g0671 Cre-Chr7:4455874 4.80E-106 dispersed
Cre01g0459 Cre-Chr1:3920629 Cre01g0460 Cre-Chr1:3952799 1.00E-89 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre01g0460 - - - 0.0