Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre01g0475 ATGGCGGGAAAGGGAGAGGGTCCGGCCATCGGTATCGATCTCGGTACCACTTACTCTTGTGTTGGAGTTTGGCAGCATGATCGTGTTGAGATTATTGCCAATGATCAAGGAAATCGGACGACGCCGTCGTATGTTGCTTTCACTGACACCGAACGACTCATCGGCGACGCTGCCAAGAACCAAGTCGCTATGAATCCTCTCAACACCGTCTTCGATGCGAAGCGGTTGATTGGAAGGAGATTCTCCGATCCCTCGGTCCAGAGCGACATGAAATTGTGGCCATTCAAGGTCATTGCCGGTCCGGGGGACAAACCTATGATTGTCGTCAATTACAAAGGCGAAGAGAAGCAATTCGCCGCTGAAGAAATCTCATCCATGGTCCTTACGAAAATGCGTGAGATAGCAGAAGCTTACCTCGGTACCTCCGTGAAGAACGCCGTCGTCACCGTTCCTGCTTACTTCAATGACTCTCAGCGTCAGGCCACCAAGGACGCCGGAGTCATTGCCGGTCTTAATGTCATGCGGATCATCAACGAGCCTACAGCTGCTGCTATTGCTTATGGACTCGACAAAAAGGCGAGCAGTGTTGGCGAGAAGAATGTTCTGATTTTTGATCTGGGTGGAGGAACGTTTGATGTCTCTCTCCTCACAATTGAGGAAGGCATTTTCGAGGTGAAGGCAACTGCCGGTGACACCCATCTCGGCGGTGAGGATTTCGACAACAGATTGGTTAACCATTTTGTTCAAGAATTCAAGAGGAAGCATAAGAAAGACATCAGTGGAAATCCAAGGGCTCTCAGGAGATTGAGGACTGCTTGTGAAAGAGCCAAGAGAACCCTCTCATCCACTGCCCAAACTACAATCGAAATCGATTCTTTGTATGAAGGAATTGATTTCTACACAACCATTACTCGAGCTAGATTCGAAGAGCTCAACATGGACCTGTTTCGAAAGTGTATGGAGCCAGTTGAGAAGTGTTTGAGAGATGCAAAGATGGACAAAAGCAGCGTCCATGATGTTGTCCTTGTTGGTGGTTCTACAAGAATTCCCAAAGTGCAGCAGCTATTGCAAGATTTCTTCAATGGCAAGGAACTTTGCAAGAGTATCAATCCTGATGAAGCAGTTGCTTATGGAGCTGCTGTCCAAGCCGCCATCTTGAGTGGTGAAGGAAACGAGAAAGTGCAAGACCTTCTTCTTTTGGATGTTACTCCTCTATCACTTGGTTTGGAAACTGCAGGAGGTGTAATGACTGTTCTAATCCCAAGGAACACGACCATTCCCACCAAGAAGGAACAAGTGTTCTCTACTTATTCGGATAACCAACCTGGTGTTCTTATTCAAGTCTACGAGGGTGAAAGGACAAGAACAAAAGATAACAACTTATTGGGCAAGTTTGAACTTTCTGGCATCCCTCCTGCTCCAAGAGGTGTTCCTCAGATCACTGTCTGCTTCGACATTGACGCCAACGGTATTCTAAACGTATCTGCAGAGGATAAAACTACAGGACAGAAGAACAAGATCACCATTACCAACGACAAAGGAAGGTTGTCCAAAGAAGAGATTGAGAAATTGGTTCAGGAAGCAGAGAAATTCAAGGCTGAGGATGAAGAACACAAGAAGAAAGTTGAATCAAAGAATGCTTTAGAAAACTATGCTTACAACATGAGGAATACCATCAAAGATGAGAAGATCGGTGGTAAACTTGCCCCAGCTGACAAGAAGAAGATCGAGGATGCAGTTGAACAGGCTATTCAGTGGCTAGATAGCAACCAGCTGGCTGAGTCGGATGAGTTTGATGACAAGATGAAGGAACTTGAGTCGATTTGCAACCCCATCATAGCCAAGATGTACCAAGGCGGTGCCGACATGGGTGGTGCGGCCATGGATGATGATGCTCCTCCTTCTGGTGGCAGTGGCGCTGGTCCTAAGATTGAAGAAGTCGATTAA 1947 46.84 MAGKGEGPAIGIDLGTTYSCVGVWQHDRVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMNPLNTVFDAKRLIGRRFSDPSVQSDMKLWPFKVIAGPGDKPMIVVNYKGEEKQFAAEEISSMVLTKMREIAEAYLGTSVKNAVVTVPAYFNDSQRQATKDAGVIAGLNVMRIINEPTAAAIAYGLDKKASSVGEKNVLIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFDNRLVNHFVQEFKRKHKKDISGNPRALRRLRTACERAKRTLSSTAQTTIEIDSLYEGIDFYTTITRARFEELNMDLFRKCMEPVEKCLRDAKMDKSSVHDVVLVGGSTRIPKVQQLLQDFFNGKELCKSINPDEAVAYGAAVQAAILSGEGNEKVQDLLLLDVTPLSLGLETAGGVMTVLIPRNTTIPTKKEQVFSTYSDNQPGVLIQVYEGERTRTKDNNLLGKFELSGIPPAPRGVPQITVCFDIDANGILNVSAEDKTTGQKNKITITNDKGRLSKEEIEKLVQEAEKFKAEDEEHKKKVESKNALENYAYNMRNTIKDEKIGGKLAPADKKKIEDAVEQAIQWLDSNQLAESDEFDDKMKELESICNPIIAKMYQGGADMGGAAMDDDAPPSGGSGAGPKIEEVD 648
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 4103455 4105885 - CrPI670011_01g004750.1 Cre01g0475 488020
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre01g0475 648 PANTHER HEAT SHOCK PROTEIN 70KDA 9 582 IPR013126 GO:0005524(InterPro)|GO:0005737(PANTHER)|GO:0140662(InterPro)
Cre01g0475 648 FunFam Heat shock 70 kDa protein 71 126 - -
Cre01g0475 648 ProSitePatterns Heat shock hsp70 proteins family signature 3. 340 354 IPR018181 -
Cre01g0475 648 FunFam Heat shock 70 kDa protein 197 260 - -
Cre01g0475 648 SUPERFAMILY Actin-like ATPase domain 198 388 IPR043129 -
Cre01g0475 648 FunFam Heat shock 70 kDa 391 545 - -
Cre01g0475 648 Gene3D - 71 126 - -
Cre01g0475 648 SUPERFAMILY Heat shock protein 70kD (HSP70), C-terminal subdomain 543 623 IPR029048 -
Cre01g0475 648 CDD HSPA1-2_6-8-like_NBD 9 387 - -
Cre01g0475 648 Gene3D - 192 366 - -
Cre01g0475 648 FunFam Heat shock 70 kDa protein 539 648 - -
Cre01g0475 648 FunFam Heat shock protein 70 10 196 - -
Cre01g0475 648 FunFam Heat shock cognate 70 kDa protein 2 319 366 - -
Cre01g0475 648 Gene3D Actin; Chain A, domain 4 235 318 - -
Cre01g0475 648 SUPERFAMILY Actin-like ATPase domain 8 191 IPR043129 -
Cre01g0475 648 Gene3D - 10 384 - -
Cre01g0475 648 SUPERFAMILY Heat shock protein 70kD (HSP70), peptide-binding domain 392 549 IPR029047 -
Cre01g0475 648 Gene3D Substrate Binding Domain Of DNAk; Chain A, domain 1 391 545 IPR029047 -
Cre01g0475 648 FunFam Heat shock 70 kDa 235 318 - -
Cre01g0475 648 Coils Coil 514 541 - -
Cre01g0475 648 MobiDBLite consensus disorder prediction 621 648 - -
Cre01g0475 648 Pfam Hsp70 protein 9 618 IPR013126 GO:0005524(InterPro)|GO:0140662(InterPro)
Cre01g0475 648 PRINTS 70kDa heat shock protein signature 209 219 - -
Cre01g0475 648 PRINTS 70kDa heat shock protein signature 337 353 - -
Cre01g0475 648 PRINTS 70kDa heat shock protein signature 396 415 - -
Cre01g0475 648 PRINTS 70kDa heat shock protein signature 8 21 - -
Cre01g0475 648 PRINTS 70kDa heat shock protein signature 477 493 - -
Cre01g0475 648 PRINTS 70kDa heat shock protein signature 36 48 - -
Cre01g0475 648 PRINTS 70kDa heat shock protein signature 146 166 - -
Cre01g0475 648 PRINTS 70kDa heat shock protein signature 369 389 - -
Cre01g0475 648 PRINTS 70kDa heat shock protein signature 58 66 - -
Cre01g0475 648 ProSitePatterns Heat shock hsp70 proteins family signature 1. 12 19 IPR018181 -
Cre01g0475 648 Gene3D - 546 619 IPR029048 -
Cre01g0475 648 ProSitePatterns Heat shock hsp70 proteins family signature 2. 203 216 IPR018181 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre01g0469 Cre-Chr1:4058821 Cre01g0475 Cre-Chr1:4103455 0.00E+00 proximal
Cre05g0635 Cre-Chr5:5607172 Cre01g0475 Cre-Chr1:4103455 2.30E-75 transposed
Cre05g1595 Cre-Chr5:25158478 Cre01g0475 Cre-Chr1:4103455 2.60E-74 transposed
Cre06g1813 Cre-Chr6:19450148 Cre01g0475 Cre-Chr1:4103455 5.40E-143 transposed
Cre09g0959 Cre-Chr9:9833557 Cre01g0475 Cre-Chr1:4103455 8.20E-142 transposed
Cre09g2329 Cre-Chr9:42556082 Cre01g0475 Cre-Chr1:4103455 6.50E-231 transposed
Cre10g1140 Cre-Chr10:23486000 Cre01g0475 Cre-Chr1:4103455 8.30E-157 transposed
Cre11g1563 Cre-Chr11:25299857 Cre01g0475 Cre-Chr1:4103455 0.00E+00 transposed
Cre11g2086 Cre-Chr11:32625922 Cre01g0475 Cre-Chr1:4103455 6.60E-56 transposed
Cre01g0475 Cre-Chr1:4103455 Cre04g0925 Cre-Chr4:27917040 0.00E+00 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre01g0475 K03283 - csv:101211905 1229.54