Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre01g0476 ATGGTTTTCTCTTCAGTTCCTGTGTTTCTTGATCCACCCAATTGGCCTTCTCAGCAACCAACTCAGCTACAAGGAAGCGGTTGTGAGACTAATAATGCTCAACACCTTCCACCTCCGGCACCGCCAACTAGCGGTGGTGGCGGTACTGGACCTGGCTCGATTAGACCAGGGTCAATGACGGATCGAGCTAGGTTGGCGAAGATACCGCAACCGGAAGCCGGGTTAAAATGTCCTAGATGCGAATCAACAAACACAAAGTTTTGTTACTTCAACAACTACAGTCTCACTCAACCTCGCCACTTTTGCAAGACATGCCGACGGTACTGGACGAGAGGTGGAGCGATGAGGAACGTACCGGTTGGAGGCGGGTGTCGGCGGTCGAGCAAGAGATCAAGCAAAGGAGGAAGCAATAGGTCAAAATCTCCAGGGGGTTCAAGCACTTCAACAAGCACAGTGTCATCAAATAGTTGCACAACAGACATAATTAGCCAACAACTGGGTCATCATCCTCCTCCTCCAACAACCCATTTGCCCTTTTTTTCTCAAAATTTACATCATCTTAGTGATTTTGGGAACCTTGGTTTAAACTTTGAAGCCCTTCAAATTCCTTCACTCCCATCATCAGCTGGAGGAGTTGAATCCTCAATTTTATCAAGTGGAATTACAGATCATCATCAATGGAAAATACCCTTTTTTGCAAATTTACATCAACAAAATGGGATGTATTCAAATTTCATGGCTGATCAACATCATCATCATCAACAAGGAGCTGATTTTTCAAATTACCAGCGGTTGTCAAAGCCATTATTGGAGAGTGGATTCAATACTACTACTACTACAAATCATCATCAATTGGAGAATATTAATAATAATAATAATAGCATGAAAATCTTGGAGGAGACACAAGGGATTAACAATTTGTCAAGAAATTTTCTTGGAATTCAACCAAATGATGATCAATTCTGGAATTCTACTACTACTACAACAACAACACCTGGGAATATTGCATGGAGTAGTGATCAAATTTCAGATCATTTCAATTCAACTTCTTCCACTACTCATCTCTTGGGTTGA 1074 41.99 MVFSSVPVFLDPPNWPSQQPTQLQGSGCETNNAQHLPPPAPPTSGGGGTGPGSIRPGSMTDRARLAKIPQPEAGLKCPRCESTNTKFCYFNNYSLTQPRHFCKTCRRYWTRGGAMRNVPVGGGCRRSSKRSSKGGSNRSKSPGGSSTSTSTVSSNSCTTDIISQQLGHHPPPPTTHLPFFSQNLHHLSDFGNLGLNFEALQIPSLPSSAGGVESSILSSGITDHHQWKIPFFANLHQQNGMYSNFMADQHHHHQQGADFSNYQRLSKPLLESGFNTTTTTNHHQLENINNNNNSMKILEETQGINNLSRNFLGIQPNDDQFWNSTTTTTTTPGNIAWSSDQISDHFNSTSSTTHLLG 357
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 4125629 4127049 + CrPI670011_01g004760.1 Cre01g0476 488021
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre01g0476 357 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 63 275 IPR045174 GO:0003700(InterPro)|GO:0006355(InterPro)
Cre01g0476 357 ProSitePatterns Zinc finger Dof-type signature. 77 113 IPR003851 GO:0003677(InterPro)|GO:0006355(InterPro)
Cre01g0476 357 ProSiteProfiles Zinc finger Dof-type profile. 75 129 IPR003851 GO:0003677(InterPro)|GO:0006355(InterPro)
Cre01g0476 357 Pfam Dof domain, zinc finger 75 129 IPR003851 GO:0003677(InterPro)|GO:0006355(InterPro)
Cre01g0476 357 MobiDBLite consensus disorder prediction 1 59 - -
Cre01g0476 357 MobiDBLite consensus disorder prediction 134 155 - -
Cre01g0476 357 MobiDBLite consensus disorder prediction 116 155 - -
Cre01g0476 357 MobiDBLite consensus disorder prediction 11 33 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre01g0476 Cre-Chr1:4125629 Cre03g0474 Cre-Chr3:3153121 3.50E-37 dispersed
Cre01g0476 Cre-Chr1:4125629 Cre10g2214 Cre-Chr10:36623748 1.80E-41 wgd
Cre01g0476 Cre-Chr1:4125629 Cre02g2330 Cre-Chr2:36784936 1.70E-39 wgd
Cre01g0476 Cre-Chr1:4125629 Cre04g0923 Cre-Chr4:27900575 5.50E-35 wgd
Cre01g0476 Cre-Chr1:4125629 Cre07g0681 Cre-Chr7:4608318 7.70E-45 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
52982 PF02701 zf-Dof 4.50E-31 No_clan Cre TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre01g0476 - - - 0.0