Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cre01g0476 | ATGGTTTTCTCTTCAGTTCCTGTGTTTCTTGATCCACCCAATTGGCCTTCTCAGCAACCAACTCAGCTACAAGGAAGCGGTTGTGAGACTAATAATGCTCAACACCTTCCACCTCCGGCACCGCCAACTAGCGGTGGTGGCGGTACTGGACCTGGCTCGATTAGACCAGGGTCAATGACGGATCGAGCTAGGTTGGCGAAGATACCGCAACCGGAAGCCGGGTTAAAATGTCCTAGATGCGAATCAACAAACACAAAGTTTTGTTACTTCAACAACTACAGTCTCACTCAACCTCGCCACTTTTGCAAGACATGCCGACGGTACTGGACGAGAGGTGGAGCGATGAGGAACGTACCGGTTGGAGGCGGGTGTCGGCGGTCGAGCAAGAGATCAAGCAAAGGAGGAAGCAATAGGTCAAAATCTCCAGGGGGTTCAAGCACTTCAACAAGCACAGTGTCATCAAATAGTTGCACAACAGACATAATTAGCCAACAACTGGGTCATCATCCTCCTCCTCCAACAACCCATTTGCCCTTTTTTTCTCAAAATTTACATCATCTTAGTGATTTTGGGAACCTTGGTTTAAACTTTGAAGCCCTTCAAATTCCTTCACTCCCATCATCAGCTGGAGGAGTTGAATCCTCAATTTTATCAAGTGGAATTACAGATCATCATCAATGGAAAATACCCTTTTTTGCAAATTTACATCAACAAAATGGGATGTATTCAAATTTCATGGCTGATCAACATCATCATCATCAACAAGGAGCTGATTTTTCAAATTACCAGCGGTTGTCAAAGCCATTATTGGAGAGTGGATTCAATACTACTACTACTACAAATCATCATCAATTGGAGAATATTAATAATAATAATAATAGCATGAAAATCTTGGAGGAGACACAAGGGATTAACAATTTGTCAAGAAATTTTCTTGGAATTCAACCAAATGATGATCAATTCTGGAATTCTACTACTACTACAACAACAACACCTGGGAATATTGCATGGAGTAGTGATCAAATTTCAGATCATTTCAATTCAACTTCTTCCACTACTCATCTCTTGGGTTGA | 1074 | 41.99 | MVFSSVPVFLDPPNWPSQQPTQLQGSGCETNNAQHLPPPAPPTSGGGGTGPGSIRPGSMTDRARLAKIPQPEAGLKCPRCESTNTKFCYFNNYSLTQPRHFCKTCRRYWTRGGAMRNVPVGGGCRRSSKRSSKGGSNRSKSPGGSSTSTSTVSSNSCTTDIISQQLGHHPPPPTTHLPFFSQNLHHLSDFGNLGLNFEALQIPSLPSSAGGVESSILSSGITDHHQWKIPFFANLHQQNGMYSNFMADQHHHHQQGADFSNYQRLSKPLLESGFNTTTTTNHHQLENINNNNNSMKILEETQGINNLSRNFLGIQPNDDQFWNSTTTTTTTPGNIAWSSDQISDHFNSTSSTTHLLG | 357 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
1 | 4125629 | 4127049 | + | CrPI670011_01g004760.1 | Cre01g0476 | 488021 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cre01g0476 | 357 | PANTHER | DOF ZINC FINGER PROTEIN DOF1.4-RELATED | 63 | 275 | IPR045174 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cre01g0476 | 357 | ProSitePatterns | Zinc finger Dof-type signature. | 77 | 113 | IPR003851 | GO:0003677(InterPro)|GO:0006355(InterPro) | |
Cre01g0476 | 357 | ProSiteProfiles | Zinc finger Dof-type profile. | 75 | 129 | IPR003851 | GO:0003677(InterPro)|GO:0006355(InterPro) | |
Cre01g0476 | 357 | Pfam | Dof domain, zinc finger | 75 | 129 | IPR003851 | GO:0003677(InterPro)|GO:0006355(InterPro) | |
Cre01g0476 | 357 | MobiDBLite | consensus disorder prediction | 1 | 59 | - | - | |
Cre01g0476 | 357 | MobiDBLite | consensus disorder prediction | 134 | 155 | - | - | |
Cre01g0476 | 357 | MobiDBLite | consensus disorder prediction | 116 | 155 | - | - | |
Cre01g0476 | 357 | MobiDBLite | consensus disorder prediction | 11 | 33 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cre01g0476 | Cre-Chr1:4125629 | Cre03g0474 | Cre-Chr3:3153121 | 3.50E-37 | dispersed | |
Cre01g0476 | Cre-Chr1:4125629 | Cre10g2214 | Cre-Chr10:36623748 | 1.80E-41 | wgd | |
Cre01g0476 | Cre-Chr1:4125629 | Cre02g2330 | Cre-Chr2:36784936 | 1.70E-39 | wgd | |
Cre01g0476 | Cre-Chr1:4125629 | Cre04g0923 | Cre-Chr4:27900575 | 5.50E-35 | wgd | |
Cre01g0476 | Cre-Chr1:4125629 | Cre07g0681 | Cre-Chr7:4608318 | 7.70E-45 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
52982 | PF02701 | zf-Dof | 4.50E-31 | No_clan | Cre | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cre01g0476 | - | - | - | 0.0 |