Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre01g0489 ATGGCAGATGCAGAGGACATTCAGCCTCTTGTGTGTGATAATGGAACAGGAATGGTTAAGGCTGGATTTGCTGGGGATGATGCTCCCCGGGCAGTCTTCCCTAGCATTGTCGGCCGTCCTCGTCACACTGGTGTGATGGTTGGCATGGGCCAAAAAGATGCTTATGTTGGCGATGAAGCTCAATCCAAGCGTGGTATTTTGACCCTGAAATACCCAATTGAGCATGGTATTGTGAGCAACTGGGATGATATGGAAAAGATATGGCATCACACCTTCTATAATGAGCTTCGTGTCGCTCCAGAGGAGCATCCTGTACTCCTAACTGAGGCTCCTCTTAACCCCAAGGCTAACCGTGAAAAGATGACCCAAATCATGTTTGAGACCTTTAACACCCCTGCCATGTATGTAGCTATTCAAGCTGTCCTCTCACTGTATGCCAGTGGTCGAACCACCGGCATTGTGTTGGACTCTGGTGATGGTGTCAGTCATACAGTCCCCATCTATGAGGGCTATGCTCTCCCACATGCCATTCTTCGACTCGACCTTGCTGGCCGTGATCTTACTGATAACTTGATGAAAATTCTCACGGAGCGTGGTTATTCATTCACTACCACAGCAGAGCGTGAAATTGTGAGGGATATGAAGGAAAAGCTTTCATATATTGCCCTTGACTATGAGCAAGAGCTTGAAACATCCAAAACCAGTTCATCAGTTGAAAAGAGCTATGAGTTGCCTGATGGACAAGTCATCACAATTGGCGCCGAGCGTTTTAGATGCCCGGAAGTTCTTTTCCAGCCATCCATGATAGGAATGGAAGCTGCAGGTATTCATGAAACCACATATAATTCCATCATGAAGTGCGATGTGGATATCAGGAAGGATCTGTATGGAAACATTGTCCTCTCTGGTGGTTCGACCATGTTTTCGGGCATTGCCGATAGAATGAGCAAGGAAATCTCTGCATTGGCTCCAAGCAGCATGAAGATCAAGGTGGTGGCACCTCCAGAGAGAAAATACAGTGTCTGGATTGGTGGTTCTATCTTGGCTTCTCTGAGTACCTTCCAGCAGATGTGGATTGCAAAGGCAGAGTATGATGAATCTGGGCCATCAATTGTGCACAGGAAATGCTTCTAA 1134 46.91 MADAEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDNLMKILTERGYSFTTTAEREIVRDMKEKLSYIALDYEQELETSKTSSSVEKSYELPDGQVITIGAERFRCPEVLFQPSMIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFSGIADRMSKEISALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWIAKAEYDESGPSIVHRKCF 377
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 4215697 4217231 + CrPI670011_01g004890.1 Cre01g0489 488034
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre01g0489 377 ProSitePatterns Actins signature 1. 55 65 IPR004001 -
Cre01g0489 377 Gene3D - 140 340 - -
Cre01g0489 377 Pfam Actin 5 377 IPR004000 -
Cre01g0489 377 ProSitePatterns Actins and actin-related proteins signature. 106 118 IPR020902 -
Cre01g0489 377 CDD NBD_sugar-kinase_HSP70_actin 10 183 - -
Cre01g0489 377 PRINTS Actin signature 51 62 IPR004000 -
Cre01g0489 377 PRINTS Actin signature 238 254 IPR004000 -
Cre01g0489 377 PRINTS Actin signature 63 85 IPR004000 -
Cre01g0489 377 PRINTS Actin signature 142 161 IPR004000 -
Cre01g0489 377 PRINTS Actin signature 28 37 IPR004000 -
Cre01g0489 377 PRINTS Actin signature 117 130 IPR004000 -
Cre01g0489 377 PANTHER ACTIN 8 369 IPR004000 GO:0005737(PANTHER)
Cre01g0489 377 SMART actin_3 7 377 IPR004000 -
Cre01g0489 377 Gene3D - 10 371 - -
Cre01g0489 377 FunFam Actin, alpha skeletal muscle 255 330 - -
Cre01g0489 377 FunFam Actin, muscle 182 273 - -
Cre01g0489 377 FunFam Actin, alpha skeletal muscle 3 173 - -
Cre01g0489 377 ProSitePatterns Actins signature 2. 358 366 IPR004001 -
Cre01g0489 377 SUPERFAMILY Actin-like ATPase domain 6 155 IPR043129 -
Cre01g0489 377 Gene3D Actin; Chain A, domain 4 182 273 - -
Cre01g0489 377 SUPERFAMILY Actin-like ATPase domain 149 377 IPR043129 -
Cre01g0489 377 FunFam Actin, alpha skeletal muscle 331 377 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre01g0489 Cre-Chr1:4215697 Cre10g1871 Cre-Chr10:33285010 2.00E-216 dispersed
Cre07g0679 Cre-Chr7:4586163 Cre01g0489 Cre-Chr1:4215697 6.10E-207 transposed
Cre01g0489 Cre-Chr1:4215697 Cre02g2324 Cre-Chr2:36726534 6.60E-188 wgd
Cre01g0489 Cre-Chr1:4215697 Cre04g0915 Cre-Chr4:27828040 4.90E-215 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre01g0489 K10355 - csv:101220611 745.732