Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Cre01g0497 ATGGCAGCAACCATTTCCACAATCTTTCTAATATCACTCTCTAATTTCTTTCTAATAATGTCATTAGGAGTGGAAAGCAGAGCACTTACCGGAGGTCTTTCCGGCGCCGGACCATGGCAGACTGCCCATGCTACTTTCTACGGCGGCAATGACGCCTCCGGCACAATGGGCGGGGCGTGCGGTTATGGCAACTTGTACAGCCAAGGCTACGGCGTGAACACGGCGGCGCTCAGCACAGCTCTGTTCAACGACGGCTACAGCTGCGGGGCTTGTTTTGAGATCAAGTGCGTGAATGACCCACAATGGTGCCATGCCGGTAACCCCTCCATCTTTGTCACAGCCACCAATTTTTGTCCTCCCAATTACGCTCTACCCAACGACAATGGCGGCTGGTGCAACCCTCCTCGCCCTCACTTCGACCTCTCCATGCCCATGTTTCTTAAAATCGCCCAATATCGCGCCGGTATCGTCCCCGTCTCCTTTCGCAGGGTGGCATGTCGGAGGGAGGGAGGGATGAGGTTTACGATCAATGGGTTCAAATATTTCAATTTGGTATTGATAACCAATGTGGGTGGAGCAGGGGATATTGTGAGTGTGAGCATCAAGGGATCGAAGACAGGGTGGATGAGTATGACACGTAATTGGGGTCAAAACTGGCAGTCAAATACTGTTTTGGTGGGTCAATCACTTTCGTTTAGTGTCAAAGGCAGTGATGGTCGGATTTCAACTTCCTCCAATATTGTTCCTTCTCATTGGCAATTTGCTATCCGTCGATTCGTGTCTCGCCGGCGGAAATCATCAAAAGAGGGGGACATTTTTAATCTCTCTGGTACGAGGGCTCTTTCAAGCTCAAAGGAAAGGATAGAAAACTTCACACCAGTCACAACCTTCGAGCATTCAAGTTTTGTTGATTTAGACTCTGAAGTTATGGAGGAGCAGTTTGTACTGAGGGTTCCACCTTCTGTTGCTGAACGAATTGAACGTCTACTAAATGAAAATGCTTCTTCATCTGAAGATGCTGCATTGGATTTGTCTTTCTCTGAGGATGGGAGAAGTGGCACTTTTGCCATTGGCGATGATCATTTTCCAGCATCTCTTCTGGATCTCCCTTGTGTAGTGGAATCCTATAAAACATACGATGATACTGTTCTAATCAAAACTGCAGACATTGGCCAGATGATCATGGTTAGAGAACCGGGTGACCCTGCTCCAGAGTCGACTGAGTATAGGCATGGTCTGACCCCTCCTATGAGGGATGCTCGAAAACGTAGATTTCGAAGAGAGCCAGATTTAAATCCTGAGCTTGTACGGCGAGTGGAGAAAGATTTACTAAATATCATGGCAGGAGGAACTACCGAAAATGCAGATATCCTTGATACTTTATTGGCTGAGCAACAGGATGATAGAGATGAGAATCCTCATCATGCAAGTGCAAAGCCTGCATCCGCACCTGCAGCAAAGCCTGATGTAATGGAAACTGAAACAAATGTTGGGGAGCCTGAAAGGAGCGACTCTGATGACTCTGATCATTCAATTGATTAG 1542 47.54 MAATISTIFLISLSNFFLIMSLGVESRALTGGLSGAGPWQTAHATFYGGNDASGTMGGACGYGNLYSQGYGVNTAALSTALFNDGYSCGACFEIKCVNDPQWCHAGNPSIFVTATNFCPPNYALPNDNGGWCNPPRPHFDLSMPMFLKIAQYRAGIVPVSFRRVACRREGGMRFTINGFKYFNLVLITNVGGAGDIVSVSIKGSKTGWMSMTRNWGQNWQSNTVLVGQSLSFSVKGSDGRISTSSNIVPSHWQFAIRRFVSRRRKSSKEGDIFNLSGTRALSSSKERIENFTPVTTFEHSSFVDLDSEVMEEQFVLRVPPSVAERIERLLNENASSSEDAALDLSFSEDGRSGTFAIGDDHFPASLLDLPCVVESYKTYDDTVLIKTADIGQMIMVREPGDPAPESTEYRHGLTPPMRDARKRRFRREPDLNPELVRRVEKDLLNIMAGGTTENADILDTLLAEQQDDRDENPHHASAKPASAPAAKPDVMETETNVGEPERSDSDDSDHSID 513
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
1 4275432 4280855 - CrPI670011_01g004970.1 Cre01g0497 488042
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Cre01g0497 513 SMART TAFII55_N_2 310 454 IPR006751 GO:0005669(InterPro)|GO:0006367(InterPro)
Cre01g0497 513 MobiDBLite consensus disorder prediction 494 513 - -
Cre01g0497 513 FunFam Expansin 171 263 - -
Cre01g0497 513 SUPERFAMILY PHL pollen allergen 168 254 IPR036749 -
Cre01g0497 513 Gene3D - 172 256 IPR036749 -
Cre01g0497 513 SMART dpbb_1 74 161 IPR007112 -
Cre01g0497 513 FunFam Expansin 29 167 - -
Cre01g0497 513 CDD TAF7 311 457 IPR006751 GO:0005669(InterPro)|GO:0006367(InterPro)
Cre01g0497 513 MobiDBLite consensus disorder prediction 397 419 - -
Cre01g0497 513 Pfam Lytic transglycolase 74 161 IPR009009 -
Cre01g0497 513 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 181 254 IPR007117 -
Cre01g0497 513 MobiDBLite consensus disorder prediction 464 513 - -
Cre01g0497 513 PRINTS Expansin signature 246 262 IPR002963 GO:0009664(InterPro)
Cre01g0497 513 PRINTS Expansin signature 182 203 IPR002963 GO:0009664(InterPro)
Cre01g0497 513 PRINTS Expansin signature 129 146 IPR002963 GO:0009664(InterPro)
Cre01g0497 513 PRINTS Expansin signature 217 238 IPR002963 GO:0009664(InterPro)
Cre01g0497 513 PRINTS Expansin signature 170 182 IPR002963 GO:0009664(InterPro)
Cre01g0497 513 PRINTS Expansin signature 69 83 IPR002963 GO:0009664(InterPro)
Cre01g0497 513 PRINTS Expansin signature 110 120 IPR002963 GO:0009664(InterPro)
Cre01g0497 513 PRINTS Expansin signature 146 159 IPR002963 GO:0009664(InterPro)
Cre01g0497 513 PRINTS Expansin signature 96 107 IPR002963 GO:0009664(InterPro)
Cre01g0497 513 PRINTS Expansin/Lol pI family signature 246 260 IPR007118 GO:0005576(InterPro)
Cre01g0497 513 PRINTS Expansin/Lol pI family signature 78 96 IPR007118 GO:0005576(InterPro)
Cre01g0497 513 PRINTS Expansin/Lol pI family signature 38 53 IPR007118 GO:0005576(InterPro)
Cre01g0497 513 PRINTS Expansin/Lol pI family signature 154 170 IPR007118 GO:0005576(InterPro)
Cre01g0497 513 PRINTS Expansin/Lol pI family signature 208 222 IPR007118 GO:0005576(InterPro)
Cre01g0497 513 PRINTS Expansin/Lol pI family signature 56 74 IPR007118 GO:0005576(InterPro)
Cre01g0497 513 Gene3D - 28 167 IPR036908 -
Cre01g0497 513 Pfam TAFII55 protein conserved region 310 446 IPR006751 GO:0005669(InterPro)|GO:0006367(InterPro)
Cre01g0497 513 Pfam Expansin C-terminal domain 172 249 IPR007117 -
Cre01g0497 513 PANTHER EXPANSIN-A15 21 255 IPR002963 GO:0009664(InterPro)
Cre01g0497 513 CDD DPBB_EXPA_N 38 166 - -
Cre01g0497 513 SUPERFAMILY Barwin-like endoglucanases 38 189 IPR036908 -
Cre01g0497 513 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 57 171 IPR007112 -
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre01g0497 Cre-Chr1:4275432 Cre03g0457 Cre-Chr3:3010152 7.30E-113 dispersed
Cre01g0497 Cre-Chr1:4275432 Cre02g2314 Cre-Chr2:36638863 4.60E-115 wgd
Cre01g0497 Cre-Chr1:4275432 Cre04g0909 Cre-Chr4:27752284 8.60E-114 wgd
Cre01g0497 Cre-Chr1:4275432 Cre07g0690 Cre-Chr7:4766594 5.00E-114 wgd
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre01g0497 - - - 0.0