Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cre01g0497 | ATGGCAGCAACCATTTCCACAATCTTTCTAATATCACTCTCTAATTTCTTTCTAATAATGTCATTAGGAGTGGAAAGCAGAGCACTTACCGGAGGTCTTTCCGGCGCCGGACCATGGCAGACTGCCCATGCTACTTTCTACGGCGGCAATGACGCCTCCGGCACAATGGGCGGGGCGTGCGGTTATGGCAACTTGTACAGCCAAGGCTACGGCGTGAACACGGCGGCGCTCAGCACAGCTCTGTTCAACGACGGCTACAGCTGCGGGGCTTGTTTTGAGATCAAGTGCGTGAATGACCCACAATGGTGCCATGCCGGTAACCCCTCCATCTTTGTCACAGCCACCAATTTTTGTCCTCCCAATTACGCTCTACCCAACGACAATGGCGGCTGGTGCAACCCTCCTCGCCCTCACTTCGACCTCTCCATGCCCATGTTTCTTAAAATCGCCCAATATCGCGCCGGTATCGTCCCCGTCTCCTTTCGCAGGGTGGCATGTCGGAGGGAGGGAGGGATGAGGTTTACGATCAATGGGTTCAAATATTTCAATTTGGTATTGATAACCAATGTGGGTGGAGCAGGGGATATTGTGAGTGTGAGCATCAAGGGATCGAAGACAGGGTGGATGAGTATGACACGTAATTGGGGTCAAAACTGGCAGTCAAATACTGTTTTGGTGGGTCAATCACTTTCGTTTAGTGTCAAAGGCAGTGATGGTCGGATTTCAACTTCCTCCAATATTGTTCCTTCTCATTGGCAATTTGCTATCCGTCGATTCGTGTCTCGCCGGCGGAAATCATCAAAAGAGGGGGACATTTTTAATCTCTCTGGTACGAGGGCTCTTTCAAGCTCAAAGGAAAGGATAGAAAACTTCACACCAGTCACAACCTTCGAGCATTCAAGTTTTGTTGATTTAGACTCTGAAGTTATGGAGGAGCAGTTTGTACTGAGGGTTCCACCTTCTGTTGCTGAACGAATTGAACGTCTACTAAATGAAAATGCTTCTTCATCTGAAGATGCTGCATTGGATTTGTCTTTCTCTGAGGATGGGAGAAGTGGCACTTTTGCCATTGGCGATGATCATTTTCCAGCATCTCTTCTGGATCTCCCTTGTGTAGTGGAATCCTATAAAACATACGATGATACTGTTCTAATCAAAACTGCAGACATTGGCCAGATGATCATGGTTAGAGAACCGGGTGACCCTGCTCCAGAGTCGACTGAGTATAGGCATGGTCTGACCCCTCCTATGAGGGATGCTCGAAAACGTAGATTTCGAAGAGAGCCAGATTTAAATCCTGAGCTTGTACGGCGAGTGGAGAAAGATTTACTAAATATCATGGCAGGAGGAACTACCGAAAATGCAGATATCCTTGATACTTTATTGGCTGAGCAACAGGATGATAGAGATGAGAATCCTCATCATGCAAGTGCAAAGCCTGCATCCGCACCTGCAGCAAAGCCTGATGTAATGGAAACTGAAACAAATGTTGGGGAGCCTGAAAGGAGCGACTCTGATGACTCTGATCATTCAATTGATTAG | 1542 | 47.54 | MAATISTIFLISLSNFFLIMSLGVESRALTGGLSGAGPWQTAHATFYGGNDASGTMGGACGYGNLYSQGYGVNTAALSTALFNDGYSCGACFEIKCVNDPQWCHAGNPSIFVTATNFCPPNYALPNDNGGWCNPPRPHFDLSMPMFLKIAQYRAGIVPVSFRRVACRREGGMRFTINGFKYFNLVLITNVGGAGDIVSVSIKGSKTGWMSMTRNWGQNWQSNTVLVGQSLSFSVKGSDGRISTSSNIVPSHWQFAIRRFVSRRRKSSKEGDIFNLSGTRALSSSKERIENFTPVTTFEHSSFVDLDSEVMEEQFVLRVPPSVAERIERLLNENASSSEDAALDLSFSEDGRSGTFAIGDDHFPASLLDLPCVVESYKTYDDTVLIKTADIGQMIMVREPGDPAPESTEYRHGLTPPMRDARKRRFRREPDLNPELVRRVEKDLLNIMAGGTTENADILDTLLAEQQDDRDENPHHASAKPASAPAAKPDVMETETNVGEPERSDSDDSDHSID | 513 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
1 | 4275432 | 4280855 | - | CrPI670011_01g004970.1 | Cre01g0497 | 488042 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cre01g0497 | 513 | SMART | TAFII55_N_2 | 310 | 454 | IPR006751 | GO:0005669(InterPro)|GO:0006367(InterPro) | |
Cre01g0497 | 513 | MobiDBLite | consensus disorder prediction | 494 | 513 | - | - | |
Cre01g0497 | 513 | FunFam | Expansin | 171 | 263 | - | - | |
Cre01g0497 | 513 | SUPERFAMILY | PHL pollen allergen | 168 | 254 | IPR036749 | - | |
Cre01g0497 | 513 | Gene3D | - | 172 | 256 | IPR036749 | - | |
Cre01g0497 | 513 | SMART | dpbb_1 | 74 | 161 | IPR007112 | - | |
Cre01g0497 | 513 | FunFam | Expansin | 29 | 167 | - | - | |
Cre01g0497 | 513 | CDD | TAF7 | 311 | 457 | IPR006751 | GO:0005669(InterPro)|GO:0006367(InterPro) | |
Cre01g0497 | 513 | MobiDBLite | consensus disorder prediction | 397 | 419 | - | - | |
Cre01g0497 | 513 | Pfam | Lytic transglycolase | 74 | 161 | IPR009009 | - | |
Cre01g0497 | 513 | ProSiteProfiles | Expansin, Cellulose-binding-like domain profile. | 181 | 254 | IPR007117 | - | |
Cre01g0497 | 513 | MobiDBLite | consensus disorder prediction | 464 | 513 | - | - | |
Cre01g0497 | 513 | PRINTS | Expansin signature | 246 | 262 | IPR002963 | GO:0009664(InterPro) | |
Cre01g0497 | 513 | PRINTS | Expansin signature | 182 | 203 | IPR002963 | GO:0009664(InterPro) | |
Cre01g0497 | 513 | PRINTS | Expansin signature | 129 | 146 | IPR002963 | GO:0009664(InterPro) | |
Cre01g0497 | 513 | PRINTS | Expansin signature | 217 | 238 | IPR002963 | GO:0009664(InterPro) | |
Cre01g0497 | 513 | PRINTS | Expansin signature | 170 | 182 | IPR002963 | GO:0009664(InterPro) | |
Cre01g0497 | 513 | PRINTS | Expansin signature | 69 | 83 | IPR002963 | GO:0009664(InterPro) | |
Cre01g0497 | 513 | PRINTS | Expansin signature | 110 | 120 | IPR002963 | GO:0009664(InterPro) | |
Cre01g0497 | 513 | PRINTS | Expansin signature | 146 | 159 | IPR002963 | GO:0009664(InterPro) | |
Cre01g0497 | 513 | PRINTS | Expansin signature | 96 | 107 | IPR002963 | GO:0009664(InterPro) | |
Cre01g0497 | 513 | PRINTS | Expansin/Lol pI family signature | 246 | 260 | IPR007118 | GO:0005576(InterPro) | |
Cre01g0497 | 513 | PRINTS | Expansin/Lol pI family signature | 78 | 96 | IPR007118 | GO:0005576(InterPro) | |
Cre01g0497 | 513 | PRINTS | Expansin/Lol pI family signature | 38 | 53 | IPR007118 | GO:0005576(InterPro) | |
Cre01g0497 | 513 | PRINTS | Expansin/Lol pI family signature | 154 | 170 | IPR007118 | GO:0005576(InterPro) | |
Cre01g0497 | 513 | PRINTS | Expansin/Lol pI family signature | 208 | 222 | IPR007118 | GO:0005576(InterPro) | |
Cre01g0497 | 513 | PRINTS | Expansin/Lol pI family signature | 56 | 74 | IPR007118 | GO:0005576(InterPro) | |
Cre01g0497 | 513 | Gene3D | - | 28 | 167 | IPR036908 | - | |
Cre01g0497 | 513 | Pfam | TAFII55 protein conserved region | 310 | 446 | IPR006751 | GO:0005669(InterPro)|GO:0006367(InterPro) | |
Cre01g0497 | 513 | Pfam | Expansin C-terminal domain | 172 | 249 | IPR007117 | - | |
Cre01g0497 | 513 | PANTHER | EXPANSIN-A15 | 21 | 255 | IPR002963 | GO:0009664(InterPro) | |
Cre01g0497 | 513 | CDD | DPBB_EXPA_N | 38 | 166 | - | - | |
Cre01g0497 | 513 | SUPERFAMILY | Barwin-like endoglucanases | 38 | 189 | IPR036908 | - | |
Cre01g0497 | 513 | ProSiteProfiles | Expansin, family-45 endoglucanase-like domain profile. | 57 | 171 | IPR007112 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cre01g0497 | Cre-Chr1:4275432 | Cre03g0457 | Cre-Chr3:3010152 | 7.30E-113 | dispersed | |
Cre01g0497 | Cre-Chr1:4275432 | Cre02g2314 | Cre-Chr2:36638863 | 4.60E-115 | wgd | |
Cre01g0497 | Cre-Chr1:4275432 | Cre04g0909 | Cre-Chr4:27752284 | 8.60E-114 | wgd | |
Cre01g0497 | Cre-Chr1:4275432 | Cre07g0690 | Cre-Chr7:4766594 | 5.00E-114 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cre01g0497 | - | - | - | 0.0 |