Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre01g0510 ATGGCGGCTTCTTCTTCTCTTTACTTTTTCTTGCTTCTTTTATCTCTTTCTTTCTTCTTGACTATGACTGCTCCAACTTCCAATTCCTCATTGCCTTTGTCTCTTCATCTTCAACATCCTCATCTTGTTGTTCAAGAAGTTCAAAGGAGCATAAATGCATCAAGGAGAAACTTGGGATATTTCTCTTGCGGAACAGGAAACCCAATAGACGACTGCTGGAGATGCGACCCCAATTGGGAAACCAACCGTAAACGCTTAGCCGATTGCGCCATTGGATTCGGCAAAAACGCCATCGGCGGCAAAAACGGCCGTTTCTACTTAGTCACAGACGCCGGCGACGACGACCCTCTCAACCCACGCCCGGGCACTCTCCGACACGCAGTCATTCAAAACGAACCGTTATGGATCATTTTCAAACGAGACATGGTGATCCAACTCAAGCAAGAACTAGTAATGAACTCATTCAAAACCATCGACGGGCGTGGGGCCAGCGTCCACGTGGCAGGTGGGCCATGCATAACGATCCATTACGCGACAAATATCATAATCCACGGCATCCACATTCACGATTGCAAGAGAGGGGGAAATGGTAATATACGGGACTCCCCACAGCACTCTGGGTGGTGGACTGTATCGGACGGTGATGGAGTGTCGATCTTTGGAGGAAAACATATCTGGATCGACCATTGCTCTTTGTCTAATTGTAATGATGGGTTGATTGATGCGATTCATGGGTCCACAGCTATTACCATATCCAATAACTATATGACACATCATGATAAAGTGATGTTGTTGGGACATAGTGATTCCTACACACAAGATAAAGACATGCAAGTTACTATTGCTTTTAACCATTTTGGTGAAGGACTCGTTCAGCGAATGCCAAGATGCAGACATGGGTATTTCCATGTAGTGAACAACGATTACACCCACTGGGAAATGTACGCCATCGGAGGGAGTGCTTCGCCGACGATATACAGCCAAGGGAACAGATTTGCGGCGCCCTACAACCGCTTCCGGAAGGAGGTAACAAAGCACGAGGACGCGCCGGAGAGCGAGTGGCGCCACTGGAACTGGCGCTCCGAGGGCGACATGATGTTGAATGGCGCCTATTTCCGCCAGTCTGGCGCCGGCGCTGCTTCCAGCTATGCAAGAGCTTACAGCCTCAGCGCTAGACCCTCCTCTCTCGTCGGCTCTATCACCGTCACCGCCGGCGCCCTCAACTGCCGCAAGGGCTCCCGCTGCTAG 1248 50.08 MAASSSLYFFLLLLSLSFFLTMTAPTSNSSLPLSLHLQHPHLVVQEVQRSINASRRNLGYFSCGTGNPIDDCWRCDPNWETNRKRLADCAIGFGKNAIGGKNGRFYLVTDAGDDDPLNPRPGTLRHAVIQNEPLWIIFKRDMVIQLKQELVMNSFKTIDGRGASVHVAGGPCITIHYATNIIIHGIHIHDCKRGGNGNIRDSPQHSGWWTVSDGDGVSIFGGKHIWIDHCSLSNCNDGLIDAIHGSTAITISNNYMTHHDKVMLLGHSDSYTQDKDMQVTIAFNHFGEGLVQRMPRCRHGYFHVVNNDYTHWEMYAIGGSASPTIYSQGNRFAAPYNRFRKEVTKHEDAPESEWRHWNWRSEGDMMLNGAYFRQSGAGAASSYARAYSLSARPSSLVGSITVTAGALNCRKGSRC 415
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 4395893 4399199 - CrPI670011_01g005100.1 Cre01g0510 488055
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre01g0510 415 SUPERFAMILY Pectin lyase-like 50 410 IPR011050 -
Cre01g0510 415 Gene3D - 66 408 IPR012334 -
Cre01g0510 415 SMART amb_all 141 338 IPR002022 -
Cre01g0510 415 FunFam Pectate lyase 66 408 - -
Cre01g0510 415 PRINTS Pollen allergen Amb family signature 315 334 IPR018082 -
Cre01g0510 415 PRINTS Pollen allergen Amb family signature 357 381 IPR018082 -
Cre01g0510 415 PRINTS Pollen allergen Amb family signature 293 312 IPR018082 -
Cre01g0510 415 PRINTS Pollen allergen Amb family signature 89 106 IPR018082 -
Cre01g0510 415 PRINTS Pollen allergen Amb family signature 213 234 IPR018082 -
Cre01g0510 415 PRINTS Pollen allergen Amb family signature 113 138 IPR018082 -
Cre01g0510 415 PRINTS Pollen allergen Amb family signature 149 165 IPR018082 -
Cre01g0510 415 PRINTS Pollen allergen Amb family signature 386 409 IPR018082 -
Cre01g0510 415 PANTHER PECTATE LYASE 18-RELATED 20 412 IPR045032 GO:0030570(InterPro)
Cre01g0510 415 Pfam Pectate lyase 147 332 IPR002022 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre01g0510 Cre-Chr1:4395893 Cre03g0634 Cre-Chr3:5246066 6.80E-186 dispersed
Cre01g0510 Cre-Chr1:4395893 Cre06g1543 Cre-Chr6:10356445 1.10E-170 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre01g0510 K01728 - csv:101217834 767.303