Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cre01g0510 | ATGGCGGCTTCTTCTTCTCTTTACTTTTTCTTGCTTCTTTTATCTCTTTCTTTCTTCTTGACTATGACTGCTCCAACTTCCAATTCCTCATTGCCTTTGTCTCTTCATCTTCAACATCCTCATCTTGTTGTTCAAGAAGTTCAAAGGAGCATAAATGCATCAAGGAGAAACTTGGGATATTTCTCTTGCGGAACAGGAAACCCAATAGACGACTGCTGGAGATGCGACCCCAATTGGGAAACCAACCGTAAACGCTTAGCCGATTGCGCCATTGGATTCGGCAAAAACGCCATCGGCGGCAAAAACGGCCGTTTCTACTTAGTCACAGACGCCGGCGACGACGACCCTCTCAACCCACGCCCGGGCACTCTCCGACACGCAGTCATTCAAAACGAACCGTTATGGATCATTTTCAAACGAGACATGGTGATCCAACTCAAGCAAGAACTAGTAATGAACTCATTCAAAACCATCGACGGGCGTGGGGCCAGCGTCCACGTGGCAGGTGGGCCATGCATAACGATCCATTACGCGACAAATATCATAATCCACGGCATCCACATTCACGATTGCAAGAGAGGGGGAAATGGTAATATACGGGACTCCCCACAGCACTCTGGGTGGTGGACTGTATCGGACGGTGATGGAGTGTCGATCTTTGGAGGAAAACATATCTGGATCGACCATTGCTCTTTGTCTAATTGTAATGATGGGTTGATTGATGCGATTCATGGGTCCACAGCTATTACCATATCCAATAACTATATGACACATCATGATAAAGTGATGTTGTTGGGACATAGTGATTCCTACACACAAGATAAAGACATGCAAGTTACTATTGCTTTTAACCATTTTGGTGAAGGACTCGTTCAGCGAATGCCAAGATGCAGACATGGGTATTTCCATGTAGTGAACAACGATTACACCCACTGGGAAATGTACGCCATCGGAGGGAGTGCTTCGCCGACGATATACAGCCAAGGGAACAGATTTGCGGCGCCCTACAACCGCTTCCGGAAGGAGGTAACAAAGCACGAGGACGCGCCGGAGAGCGAGTGGCGCCACTGGAACTGGCGCTCCGAGGGCGACATGATGTTGAATGGCGCCTATTTCCGCCAGTCTGGCGCCGGCGCTGCTTCCAGCTATGCAAGAGCTTACAGCCTCAGCGCTAGACCCTCCTCTCTCGTCGGCTCTATCACCGTCACCGCCGGCGCCCTCAACTGCCGCAAGGGCTCCCGCTGCTAG | 1248 | 50.08 | MAASSSLYFFLLLLSLSFFLTMTAPTSNSSLPLSLHLQHPHLVVQEVQRSINASRRNLGYFSCGTGNPIDDCWRCDPNWETNRKRLADCAIGFGKNAIGGKNGRFYLVTDAGDDDPLNPRPGTLRHAVIQNEPLWIIFKRDMVIQLKQELVMNSFKTIDGRGASVHVAGGPCITIHYATNIIIHGIHIHDCKRGGNGNIRDSPQHSGWWTVSDGDGVSIFGGKHIWIDHCSLSNCNDGLIDAIHGSTAITISNNYMTHHDKVMLLGHSDSYTQDKDMQVTIAFNHFGEGLVQRMPRCRHGYFHVVNNDYTHWEMYAIGGSASPTIYSQGNRFAAPYNRFRKEVTKHEDAPESEWRHWNWRSEGDMMLNGAYFRQSGAGAASSYARAYSLSARPSSLVGSITVTAGALNCRKGSRC | 415 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
1 | 4395893 | 4399199 | - | CrPI670011_01g005100.1 | Cre01g0510 | 488055 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cre01g0510 | 415 | SUPERFAMILY | Pectin lyase-like | 50 | 410 | IPR011050 | - | |
Cre01g0510 | 415 | Gene3D | - | 66 | 408 | IPR012334 | - | |
Cre01g0510 | 415 | SMART | amb_all | 141 | 338 | IPR002022 | - | |
Cre01g0510 | 415 | FunFam | Pectate lyase | 66 | 408 | - | - | |
Cre01g0510 | 415 | PRINTS | Pollen allergen Amb family signature | 315 | 334 | IPR018082 | - | |
Cre01g0510 | 415 | PRINTS | Pollen allergen Amb family signature | 357 | 381 | IPR018082 | - | |
Cre01g0510 | 415 | PRINTS | Pollen allergen Amb family signature | 293 | 312 | IPR018082 | - | |
Cre01g0510 | 415 | PRINTS | Pollen allergen Amb family signature | 89 | 106 | IPR018082 | - | |
Cre01g0510 | 415 | PRINTS | Pollen allergen Amb family signature | 213 | 234 | IPR018082 | - | |
Cre01g0510 | 415 | PRINTS | Pollen allergen Amb family signature | 113 | 138 | IPR018082 | - | |
Cre01g0510 | 415 | PRINTS | Pollen allergen Amb family signature | 149 | 165 | IPR018082 | - | |
Cre01g0510 | 415 | PRINTS | Pollen allergen Amb family signature | 386 | 409 | IPR018082 | - | |
Cre01g0510 | 415 | PANTHER | PECTATE LYASE 18-RELATED | 20 | 412 | IPR045032 | GO:0030570(InterPro) | |
Cre01g0510 | 415 | Pfam | Pectate lyase | 147 | 332 | IPR002022 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cre01g0510 | Cre-Chr1:4395893 | Cre03g0634 | Cre-Chr3:5246066 | 6.80E-186 | dispersed | |
Cre01g0510 | Cre-Chr1:4395893 | Cre06g1543 | Cre-Chr6:10356445 | 1.10E-170 | transposed |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cre01g0510 | K01728 | - | csv:101217834 | 767.303 |